Carg20555 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20555
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GrpE protein homolog
Location	Cucurbita_argyrosperma_scaffold_113 : 248081 .. 251212 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACGAAGGCTAAGAACCGGAGGCATTCCTTCACTGAGTTTGAGCTTCATCTTCTCTTCGTAATTTTTGTCAATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCCCTTCTACTTCCTCCAAAGCCATAGAATCCACATCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCATTGTTACCCATTATTAAGTTTCTCTCCCGCCTCCCATTCTTCTACGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTACGTTGAACTCTCCTTTTATTTGTTGCTTTGATTGATTACAGTTCTTGTTGTTATCATTTTTCGAATTTCTGCGTACTTTTATTTCTCTGTCGTATTGTTATTTTAGTCTTTTACGTGTGGATGTTTTGCTGGATTTGAGTTGCGATTGTTTGAGATGGAAACGTTCGCTTATTCTGCGTGTTTATTGTAAGGATTCTTTAAATGCATTTTTGGAATTTCGAATTCCTATTTTCTCAGTGCTGGATGGTGATCTTTGCTGCTATGGCCAACCCTTAGTGACACTGACTGGATTACTGAAATTTGAGGTGAAAGAGTTTTTCATTTTCTACATAGAAAAGACTGGTGGTTTTGATAAGCTGGTGGTTTAAGTCAATTTTCGTGTCAAAACTTGGCATTCCTTAAATGGAAGGTTTGATTGCCATCCATTTTGGCTAAAAAAAAAAGAAAACTCGATCTGTAATGGCCCGAGCCATCGCTAGCTGATATTGTCCTGTTTGGGGCTTTCCTTTTCTTGCTTCCACTCAAAAGTTTTCTAAAAACGCGTTTGCTAGGAAGAGGTTTCCACACCCTTATAAAGAATTCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAAGGCCCAGCGTCCTTGCTGGCACACTGTCTTGTGTCCACTCCCCTTCGAGGCTCAGCCTTCTCGCTGGCACATTGCTCTTGTCTAGCTCTGATACCATTTGTGACGATTCAGGTCCACCGCTAGCCGATATTGTCCTCTTTGGGCTTTCCCTTTCTTGCTTCCCCTCAAGATTTTAAAATGCGTCTCCTAGGGAAAGGTTCCCACACCGTTATAAAGAATGTTTCGTTCTCCCCAACCGACCGACGTGGGATCTCACGCCTACATTCCTGAAATGTAGGAACTAATAACCCATTTCTTCACTTTCTTTAGAGTGTAAGGATTTAACATTTTCTTCATTCTTGTACTTTGTAAGTGAAACAAGTGTACATAGCTTACTCTAATTGTTTGAAAATCTTTATCTCAACTCAAGAAAGTAATGGAGAAATGAAATAGAAAGCATCTGTGGAAGTTTTTGGAGGATTCTCATTGCGTTCTTCTCTTTATGGTATGCATACTCTTCATTTTCTTGTTAGGCTTAAAAGTTATAAGTAGCATCTCAATGGTTAAAGGGATTTAGCACACTGATCCACTTGAATCCCTTTTGCTTATATGATTTGTTATTTTACAACTTACTCAGAGATCTGTTTTAGATGTTCAATTCATTGCAGGATGATGAAGTTAGTTACTTTTTTTTTAATTCGCTCATTTGATGTTGTTGTTGGTTGCCCCTCCCATGAAAAAAGGTAAATAAAGAAGAGGATGATGGAGAAGATGGGAGTAAAGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGAGAAGCGTTTCTCGATGGAGATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAATTTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGAATACGTCAGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAATCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGCTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCAGTAGGAAGGCCATTTGATCCCTCGGTAAGTCAAAATCTTTTGTCTAAAATTTGATACCTTCATTTCAATCTACAAAATTGTCTGTTTGATTGATGCATGTTCTTCATGCTTGCTAGTTTTTCTTCTCTTACTAGGAAGATTAGAACATAAAAAGTATTTATTTTCTCATTCTTTATACTTGGGTGGGTGTTCTTTGCAAGTAATTCATGTCGAGTATATCAGTGATTGGAAACTAATTTGTCTTATGAGTAGTAAGTGTTGATGATTGTTGGGAGAGGAGTCTCATGTCCGCTAATTAAGGGGTTGATCAGGGGTTGATCGTGGGTTTATAAGTAAGGAATGCATCTTCATTGGTATGAGACCTTTTGGGGGAACCAAAAGTAAAGCCATGAGAGTTTATTCTCAAAGTAGACAACATCAGACCATTGTGGAGGTTTCTGGTTCCTATTAATAAGAGATTGCTATCTTTTACCGATGATGGTAAAATATGGTAAAATATTTCTTTGGTTGCAGTTACATGAGGCTGTAGCTCGAGAGGAGTCGCAAGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTGCTCGGAGAACGACTTCTGAGACCAGCAAGAGTTAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCCGAGAAACCAACCGAGCATCCTGCAACTGCTACTGCTAGAGTAGACGAACACTAATTATGCAACGCCATTTTTCGGGTTGATATAGAAGCATCGGATTTGTTGTCGTAATCCAGCACCATGTTGTAAATTTATCTCATGAACTTCCCATTTCAACTAGGCTTCTGATTCATACCATTTTATGGAGGGCATTGGAAGAACTCGCTCTCCATTTCACTTCTGTTTTATACACGTGATAAAGGGAACAATTGGGTTAAAGATTTCATTTATGCAAACTTTCTTAGATTACCAAATAGATGCGGATTTGAAGAATTCAATTGG

mRNA sequence

AAGACGAAGGCTAAGAACCGGAGGCATTCCTTCACTGAGTTTGAGCTTCATCTTCTCTTCGTAATTTTTGTCAATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCCCTTCTACTTCCTCCAAAGCCATAGAATCCACATCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCATTGTTACCCATTATTAAGTTTCTCTCCCGCCTCCCATTCTTCTACGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTAAATAAAGAAGAGGATGATGGAGAAGATGGGAGTAAAGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGAGAAGCGTTTCTCGATGGAGATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAATTTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGAATACGTCAGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAATCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGCTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCAGTAGGAAGGCCATTTGATCCCTCGTTACATGAGGCTGTAGCTCGAGAGGAGTCGCAAGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTGCTCGGAGAACGACTTCTGAGACCAGCAAGAGTTAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCCGAGAAACCAACCGAGCATCCTGCAACTGCTACTGCTAGAGTAGACGAACACTAATTATGCAACGCCATTTTTCGGGTTGATATAGAAGCATCGGATTTGTTGTCGTAATCCAGCACCATGTTGTAAATTTATCTCATGAACTTCCCATTTCAACTAGGCTTCTGATTCATACCATTTTATGGAGGGCATTGGAAGAACTCGCTCTCCATTTCACTTCTGTTTTATACACGTGATAAAGGGAACAATTGGGTTAAAGATTTCATTTATGCAAACTTTCTTAGATTACCAAATAGATGCGGATTTGAAGAATTCAATTGG

Coding sequence (CDS)

ATGGCGGCTTTGGCTCTCTCTAATTACACTCTCTTCTCTCCTCGCCCTTCTACTTCCTCCAAAGCCATAGAATCCACATCCCTTGTTACACCGTCTCTTTGTTTTCTTCATAATCCTCGCCATCGCTCTCGTCATTGTTACCCATTATTAAGTTTCTCTCCCGCCTCCCATTCTTCTACGGTTAGACGTTCATTCTTACCGTGTTTTTCTGCTCAAGATTCTGTTCCCAATGTAAATAAAGAAGAGGATGATGGAGAAGATGGGAGTAAAGCAGGAGATGAGCTTCATGGATTGAGTTTACAGGCCCTCATCAACGTATACCGAGAAGCGTTTCTCGATGGAGATCAAAAGACTATTTCTAAAGTTGAAGCGAAACTAAAAATTTTCGAAAGGGAGAAGGACGGGTTATTTCAGAAAGTGTCGAATACGTCAGCCGAGATAACATCTGGAAAAGAGAACTATATACGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACTTACCGTGAAGAACAATGCCCAAAAAGAGGTTATTGAGAATCTATTACCAATGATCGACAGTTTTGAGAAAGCCAGACAACAAATTGTTCCTCAAACTGACAAGGAGAAGAAAATTGATGTAAGCTACCAGGGTATATACAAACAATTTGTGGAGGTGCTGAGGAGCTGGCGCATCTCTGCTGTTGCCGCAGTAGGAAGGCCATTTGATCCCTCGTTACATGAGGCTGTAGCTCGAGAGGAGTCGCAAGAGATCAAGGAAGGGATCATCATTCAAGAATTACGACGCGGGTTTCTGCTCGGAGAACGACTTCTGAGACCAGCAAGAGTTAAAGTATCAAAAGGTCCAGGTAAGAAGAATTCCCCCACAACCAACTCCGAGAAACCAACCGAGCATCCTGCAACTGCTACTGCTAGAGTAGACGAACACTAA

Protein sequence

MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSSTVRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTEHPATATARVDEH

Homology

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BLAST of Carg20555 vs. NCBI nr
Match: XP_022951572.1 (uncharacterized protein LOC111454347 isoform X2 [Cucurbita moschata])

HSP 1 Score: 603.2 bits (1554), Expect = 5.0e-169
Identity = 312/315 (99.05%), Postives = 314/315 (99.68%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSST 60
           MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSS 
Sbjct: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSSP 60

Query: 61  VRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTIS 120
           VRRSFLPCFSAQDSVPNVNKEEDDGEDG+KAGDELHGLSLQALIN+YREAFLDGDQKTIS
Sbjct: 61  VRRSFLPCFSAQDSVPNVNKEEDDGEDGNKAGDELHGLSLQALINIYREAFLDGDQKTIS 120

Query: 121 KVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ 180
           KVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ
Sbjct: 121 KVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ 180

Query: 181 KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240
           KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP
Sbjct: 181 KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240

Query: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK 300
           FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK
Sbjct: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK 300

Query: 301 PTEHPATATARVDEH 316
           PTEHPATATARVDEH
Sbjct: 301 PTEHPATATARVDEH 315

[Close]

BLAST of Carg20555 vs. NCBI nr
Match: XP_022951571.1 (uncharacterized protein LOC111454347 isoform X1 [Cucurbita moschata])

HSP 1 Score: 598.6 bits (1542), Expect = 1.2e-167
Identity = 312/316 (98.73%), Postives = 314/316 (99.37%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSST 60
           MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSS 
Sbjct: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSSP 60

Query: 61  VRRSFLPCFSAQDSVPN-VNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTI 120
           VRRSFLPCFSAQDSVPN VNKEEDDGEDG+KAGDELHGLSLQALIN+YREAFLDGDQKTI
Sbjct: 61  VRRSFLPCFSAQDSVPNKVNKEEDDGEDGNKAGDELHGLSLQALINIYREAFLDGDQKTI 120

Query: 121 SKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA 180
           SKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA
Sbjct: 121 SKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA 180

Query: 181 QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR 240
           QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR
Sbjct: 181 QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR 240

Query: 241 PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE 300
           PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE
Sbjct: 241 PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE 300

Query: 301 KPTEHPATATARVDEH 316
           KPTEHPATATARVDEH
Sbjct: 301 KPTEHPATATARVDEH 316

[Close]

BLAST of Carg20555 vs. NCBI nr
Match: XP_023536677.1 (uncharacterized protein LOC111797984 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.3 bits (1505), Expect = 2.4e-163
Identity = 305/315 (96.83%), Postives = 309/315 (98.10%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSST 60
           MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSR CY LLSFSPASHSS 
Sbjct: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRLCYSLLSFSPASHSSP 60

Query: 61  VRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTIS 120
           VRRSF+PCFSAQDSVPNVNKEEDDGEDG+KAGDELHGLSLQALINVYREAFLDGDQKTIS
Sbjct: 61  VRRSFIPCFSAQDSVPNVNKEEDDGEDGNKAGDELHGLSLQALINVYREAFLDGDQKTIS 120

Query: 121 KVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ 180
           KVEAKLK FEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ
Sbjct: 121 KVEAKLKNFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ 180

Query: 181 KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240
           KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP
Sbjct: 181 KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240

Query: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK 300
           FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNS+ 
Sbjct: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSDI 300

Query: 301 PTEHPATATARVDEH 316
           PTE PATATAR+DEH
Sbjct: 301 PTEQPATATARLDEH 315

[Close]

BLAST of Carg20555 vs. NCBI nr
Match: XP_023536676.1 (uncharacterized protein LOC111797984 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 579.7 bits (1493), Expect = 6.0e-162
Identity = 305/316 (96.52%), Postives = 309/316 (97.78%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSST 60
           MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSR CY LLSFSPASHSS 
Sbjct: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRLCYSLLSFSPASHSSP 60

Query: 61  VRRSFLPCFSAQDSVPN-VNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTI 120
           VRRSF+PCFSAQDSVPN VNKEEDDGEDG+KAGDELHGLSLQALINVYREAFLDGDQKTI
Sbjct: 61  VRRSFIPCFSAQDSVPNKVNKEEDDGEDGNKAGDELHGLSLQALINVYREAFLDGDQKTI 120

Query: 121 SKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA 180
           SKVEAKLK FEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA
Sbjct: 121 SKVEAKLKNFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNA 180

Query: 181 QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR 240
           QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR
Sbjct: 181 QKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGR 240

Query: 241 PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE 300
           PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNS+
Sbjct: 241 PFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSD 300

Query: 301 KPTEHPATATARVDEH 316
            PTE PATATAR+DEH
Sbjct: 301 IPTEQPATATARLDEH 316

[Close]

BLAST of Carg20555 vs. NCBI nr
Match: XP_023001896.1 (uncharacterized protein LOC111495941 isoform X2 [Cucurbita maxima])

HSP 1 Score: 564.7 bits (1454), Expect = 2.0e-157
Identity = 297/315 (94.29%), Postives = 305/315 (96.83%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSST 60
           MAALALSNYTLFSPR STSS+AIESTSLVTPSLCFLHNPRHRSR  YPLLSFSPASHS  
Sbjct: 1   MAALALSNYTLFSPRASTSSRAIESTSLVTPSLCFLHNPRHRSRLSYPLLSFSPASHSFP 60

Query: 61  VRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTIS 120
           VRRSFLPCFSAQDSVPNVN EEDDG+  +KAGDELHGLSLQALINVYREAFLDG+QKTIS
Sbjct: 61  VRRSFLPCFSAQDSVPNVNTEEDDGKYENKAGDELHGLSLQALINVYREAFLDGNQKTIS 120

Query: 121 KVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQ 180
           KVEAKLK FEREKDGLFQKVS+TSAEITSGKENYIRLQADFDNFRKRSEKE+LTVKNNAQ
Sbjct: 121 KVEAKLKNFEREKDGLFQKVSDTSAEITSGKENYIRLQADFDNFRKRSEKEKLTVKNNAQ 180

Query: 181 KEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240
           KEVIE+LLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP
Sbjct: 181 KEVIESLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRP 240

Query: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK 300
           FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK
Sbjct: 241 FDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEK 300

Query: 301 PTEHPATATARVDEH 316
           PT+ PATATARVDEH
Sbjct: 301 PTDQPATATARVDEH 315

[Close]

BLAST of Carg20555 vs. TAIR10
Match: AT1G36390.1 (Co-chaperone GrpE family protein)

HSP 1 Score: 218.0 bits (554), Expect = 8.3e-57
Identity = 109/213 (51.17%), Postives = 159/213 (74.65%), Query Frame = 0


Query: 87  DGSKAGDELHGLSLQALINVYREAFLDGDQKTISKVEAKLKIFEREKDGLFQKVSNTSAE 146
           + S+  +      ++ LI  Y++A L+GD+ +++++E      E+EK+ + QKV + S +
Sbjct: 62  NNSEEANSKQQADVKTLIRSYKQALLNGDETSVTEIETMFCKIEKEKNKMDQKVLSLSMK 121

Query: 147 ITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTD 206
           I S KE  IRLQADFDN RK+ +K+RL+ ++NA+ +++++LLP+IDSFEKA+ Q+   TD
Sbjct: 122 IASEKEMKIRLQADFDNTRKKLDKDRLSTESNAKVQILKSLLPIIDSFEKAKLQVRVDTD 181

Query: 207 KEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQEL 266
           KEKKID SYQGIY+QFVEVLR  R+S +A VG+PFDP LHEA++REES+ +K GII +EL
Sbjct: 182 KEKKIDTSYQGIYRQFVEVLRYLRVSVIATVGKPFDPLLHEAISREESEAVKAGIITEEL 241

Query: 267 RRGFLLGERLLRPARVKVSKGPGKKNSPTTNSE 300
            +GF+LG+R+LRPA+VKVS GP  K +P+   E
Sbjct: 242 NKGFVLGDRVLRPAKVKVSLGPVNKKTPSAAEE 274

[Close]

BLAST of Carg20555 vs. TAIR10
Match: AT5G17710.2 (Co-chaperone GrpE family protein)

HSP 1 Score: 198.4 bits (503), Expect = 6.8e-51
Identity = 103/203 (50.74%), Postives = 145/203 (71.43%), Query Frame = 0


Query: 100 LQALINVYREAFLDGDQKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQA 159
           + AL+  Y+EA  D ++  I+++EA LK  E EK  L  KV++ S E++  ++  IR+ A
Sbjct: 112 ITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERDRLIRISA 171

Query: 160 DFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIY 219
           DFDNFRKR+E+ERL + +NAQ EV+ENLL ++D+FE+A+ QI  +T+ E+K+  SYQ IY
Sbjct: 172 DFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAKSQIKVETEGEEKVTNSYQSIY 231

Query: 220 KQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRP 279
           KQFVE+L S  +  V  VG+ FDP LHEA+ RE+S E +EGI+++E R+GFLLGERLLRP
Sbjct: 232 KQFVEILGSLGVIHVETVGKQFDPMLHEAIMREDSAEYEEGIVLEEYRKGFLLGERLLRP 291

Query: 280 ARVKVSKGPGKKNSPTTNSEKPT 303
           + VKVS GPG +       E+ T
Sbjct: 292 SMVKVSAGPGPEKPLEAEGEEAT 314

[Close]

BLAST of Carg20555 vs. TAIR10
Match: AT4G26780.1 (Co-chaperone GrpE family protein)

HSP 1 Score: 52.0 bits (123), Expect = 7.8e-07
Identity = 37/149 (24.83%), Postives = 68/149 (45.64%), Query Frame = 0


Query: 155 IRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVS 214
           +R  A+ +N   R+ ++    K  A +   ++LL + D+  +A   +    +   K+D S
Sbjct: 170 LRTYAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASSVV---KESFSKLDTS 229

Query: 215 -------------YQGI---YKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIK 274
                         +G+    KQ  EV + + +     +  PFDP+ H AV +       
Sbjct: 230 EDSAGAAPLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPNRHNAVFQVPDASKP 289

Query: 275 EGIIIQELRRGFLLGERLLRPARVKVSKG 288
           EG +   L+ G+ L +R++RPA V V++G
Sbjct: 290 EGTVAHVLKSGYTLYDRVIRPAEVGVTQG 315

[Close]

BLAST of Carg20555 vs. TAIR10
Match: AT5G55200.1 (Co-chaperone GrpE family protein)

HSP 1 Score: 48.5 bits (114), Expect = 8.7e-06
Identity = 45/186 (24.19%), Postives = 80/186 (43.01%), Query Frame = 0


Query: 123 EAKLKIFEREKDGLFQKVSN-------TSAEITSGKENYIRLQADFDNFRKRSEKERLTV 182
           +A++   +  +D L + VS           +I   K+ ++R  A+  N   R+ +   + 
Sbjct: 106 DAEIDFDDLSRDDLVKLVSEKEDLLKVQQKDIMEMKDKFLRTYAEQQNLMDRTNRNAESA 165

Query: 183 KNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVS-------------YQGI---Y 242
           K  A +    +LL + D+ E+A   +    +   KID S              +G+    
Sbjct: 166 KKFAVQNFATSLLDVADNLERASSVV---KESFSKIDTSKDLAGATPLLKNLLEGVEMTE 225

Query: 243 KQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRP 286
           KQ  EV R   +     +  PF+P+ H AV +       +G I   L+ G+ L +R++RP
Sbjct: 226 KQLAEVFRKAGLVKEDPLNEPFNPNRHNAVFQVPDASKPKGTIAHVLKSGYSLYDRVIRP 285

[Close]

BLAST of Carg20555 vs. Swiss-Prot
Match: sp|A2BNE2|GRPE_PROMS (Protein GrpE OS=Prochlorococcus marinus (strain AS9601) OX=146891 GN=grpE PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-33
Identity = 77/178 (43.26%), Postives = 118/178 (66.29%), Query Frame = 0


Query: 116 QKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTV 175
           + +IS  +A+L+  E+E + L              K  Y+R+ ADFDNFRKR  +++  +
Sbjct: 53  KNSISNNDARLEQLEKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDL 112

Query: 176 KNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 235
           K     + +  +LP++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S + 
Sbjct: 113 KIQLVSKTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMR 172

Query: 236 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNS 294
            VG+ FDPSLHEAV RE S++ +E  II+EL+RG+ L  ++LR A VKVS GPGK+NS
Sbjct: 173 VVGQQFDPSLHEAVLREPSEKFEEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNS 216

[Close]

BLAST of Carg20555 vs. Swiss-Prot
Match: sp|Q7V3Q4|GRPE_PROMP (Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=grpE PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-33
Identity = 88/237 (37.13%), Postives = 136/237 (57.38%), Query Frame = 0


Query: 78  VNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGDQKTISKVEAKLKIFEREKDGLF 137
           VNK ED     ++  ++   L +    N+Y E      + TI+  +A+L+  E+E + L 
Sbjct: 20  VNKNEDSSVIENQTSEDKQTLEVDD-ENIYAEDL----KNTITNNDARLEQLEKEHETL- 79

Query: 138 QKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKA 197
                        K  Y+R+ ADFDNFRKR  +++  +K     + +  +LP++D+FE+A
Sbjct: 80  -------------KSQYVRIAADFDNFRKRQSRDQDDLKVQLVSKALTAILPIVDNFERA 139

Query: 198 RQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEI 257
           RQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  V + FDP LHEAV RE SQE 
Sbjct: 140 RQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSPMRVVAQQFDPKLHEAVLREPSQEF 199

Query: 258 KEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNSEKPTEHPATATARVDE 315
            E III+EL+RG+ L  ++LR A VKVS GPG++NS     +   E    +   + E
Sbjct: 200 NEDIIIEELQRGYHLEGKVLRHALVKVSMGPGQQNSQEPEEKDKVEEDIDSENPISE 237

[Close]

BLAST of Carg20555 vs. Swiss-Prot
Match: sp|Q8DJB3|GRPE_THEEB (Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=grpE PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-33
Identity = 74/144 (51.39%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 154 YIRLQADFDNFRKRSEKERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDV 213
           YIRL ADF+NFRKR+++E+  ++   +  VI +LLP++DSFE AR  I  +T+ E+KI  
Sbjct: 101 YIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQTETEAEEKIHR 160

Query: 214 SYQGIYKQFVEVLRSWRISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLG 273
           SYQG+YKQ VE L+   +SA+ A G+PFDP+LHEAV RE + E  EG +I+EL+RG++LG
Sbjct: 161 SYQGVYKQLVECLKRIGVSAMQAKGKPFDPNLHEAVLREATNEHPEGTVIEELKRGYMLG 220

Query: 274 ERLLRPARVKVSKGPGKKNSPTTN 298
           +R+LR A VKV+  P + ++  TN
Sbjct: 221 DRVLRHAMVKVAAPPEEGSASNTN 244

[Close]

BLAST of Carg20555 vs. Swiss-Prot
Match: sp|A8G203|GRPE_PROM2 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) OX=93060 GN=grpE PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-33
Identity = 81/199 (40.70%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 116 QKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTV 175
           + TIS  +A+LK  E+E + L              K  Y+R+ ADFDNFRKR  +++  +
Sbjct: 53  KNTISNNDARLKQLEKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDL 112

Query: 176 KNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 235
           K     + +  +LP++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S + 
Sbjct: 113 KIQIVSKTLTAILPIVDNFERARQQLQPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMR 172

Query: 236 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 295
            VG+ FDP+LHEAV RE S+E  E  II+EL+RG+ L  ++LR A VKVS GPGK+NS  
Sbjct: 173 VVGQQFDPNLHEAVLREPSEESDEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNSQQ 232

Query: 296 TNSEKPTEHPATATARVDE 315
              +   E    +     E
Sbjct: 233 EVEKDTVEEDVNSEVNTSE 237

[Close]

BLAST of Carg20555 vs. Swiss-Prot
Match: sp|A3PA63|GRPE_PROM0 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) OX=167546 GN=grpE PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.2e-32
Identity = 79/197 (40.10%), Postives = 120/197 (60.91%), Query Frame = 0


Query: 118 TISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKN 177
           TIS  +A+L+  E+E + L              K  Y+R+ ADFDNFRKR  +++  +K 
Sbjct: 55  TISNNDARLEQLEKEHETL--------------KNQYVRISADFDNFRKRQSRDQDDLKI 114

Query: 178 NAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAV 237
               + +  +LP++D+FE+ARQQ+ P++++ + +  SYQG+YKQ VEVL+   +S +  V
Sbjct: 115 QLVSKTLTAILPIVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVV 174

Query: 238 GRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTN 297
           G+ FDP+LHEAV RE S+E +E  II+EL+RG+ L  ++LR A  KVS GPGK+ S    
Sbjct: 175 GQQFDPNLHEAVLREPSEEFEEDFIIEELQRGYHLEGKVLRHALAKVSMGPGKQKSQQEV 234

Query: 298 SEKPTEHPATATARVDE 315
            +   E    + A   E
Sbjct: 235 EKDTVEGDVDSDANTSE 237

[Close]

BLAST of Carg20555 vs. TrEMBL
Match: tr|A0A1S3BDD3|A0A1S3BDD3_CUCME (GrpE protein homolog OS=Cucumis melo OX=3656 GN=LOC103488418 PE=3 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 1.7e-117
Identity = 237/320 (74.06%), Postives = 260/320 (81.25%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRP-----STSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPA 60
           MAA ALSNYTLFSPRP     S+SSK ++STS     L  LHNPRHRSR C PL SFSP 
Sbjct: 1   MAAFALSNYTLFSPRPSSPFLSSSSKTLDSTSPFHQPLPLLHNPRHRSRLCDPLFSFSPT 60

Query: 61  SHSSTVRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGD 120
           S SS + RSF PC SA  SV NVN EEDDG+   K G +  G SLQ LI VYREAFLDGD
Sbjct: 61  SSSSPLTRSFAPCLSAHSSVANVNNEEDDGKAVEKDGYKFDGSSLQTLIEVYREAFLDGD 120

Query: 121 QKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTV 180
           QKT+S+VEA++KI  REKD L +K+SN   E+TSGKE YIRLQADFDNFRKRSEKE+  V
Sbjct: 121 QKTVSEVEARIKIIGREKDELSRKLSNILTEMTSGKEKYIRLQADFDNFRKRSEKEQHNV 180

Query: 181 KNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 240
           KNNAQKEVIE+LLPMID FEKARQQIVPQTDKEKKID+SYQGIYKQFVE LRSWR+SAVA
Sbjct: 181 KNNAQKEVIESLLPMIDHFEKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVA 240

Query: 241 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 300
            VGRPFDPSLHEAVAREESQEIKEGI+IQELRRGFLLGERLLRPARVKVSKGPG+K+S T
Sbjct: 241 TVGRPFDPSLHEAVAREESQEIKEGIVIQELRRGFLLGERLLRPARVKVSKGPGRKSSRT 300

Query: 301 TNSEKPTEHPATATARVDEH 316
            + +   + PA A A VDEH
Sbjct: 301 IDGK---QQPA-AAAGVDEH 316

[Close]

BLAST of Carg20555 vs. TrEMBL
Match: tr|A0A0A0LQA8|A0A0A0LQA8_CUCSA (GrpE protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G315400 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.1e-114
Identity = 233/320 (72.81%), Postives = 258/320 (80.62%), Query Frame = 0


Query: 1   MAALALSNYTLFSPRP-----STSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPA 60
           MAA ALSNYTLFSPRP     S+SSK ++S+S     L  LHNPRHRSR   PL SFSP 
Sbjct: 1   MAAFALSNYTLFSPRPSSPFLSSSSKTLDSSSSFHQPLPLLHNPRHRSRLYDPLFSFSPT 60

Query: 61  SHSSTVRRSFLPCFSAQDSVPNVNKEEDDGEDGSKAGDELHGLSLQALINVYREAFLDGD 120
           S SS + R F  C SA +SV NVN EEDDG+   K G +  G  LQ LI VYREAFLDGD
Sbjct: 61  SSSSPLTRPFASCLSAHNSVANVNNEEDDGKAMEKDGYKFDGSGLQTLIEVYREAFLDGD 120

Query: 121 QKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTV 180
           QKT+S+VEA++KI  REKD L +K+ N S E+TSGKE YIRLQADFDNFRKRSEKE+ TV
Sbjct: 121 QKTVSEVEARIKIIGREKDELSRKLMNISTEMTSGKEKYIRLQADFDNFRKRSEKEQHTV 180

Query: 181 KNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVA 240
           KNNAQKEV+E+LLPMID F+KARQQIVPQTDKEKKID+SYQGIYKQFVE LRSWR+SAVA
Sbjct: 181 KNNAQKEVLESLLPMIDHFDKARQQIVPQTDKEKKIDISYQGIYKQFVETLRSWRVSAVA 240

Query: 241 AVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPT 300
            VGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG+K+S T
Sbjct: 241 TVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGRKSSRT 300

Query: 301 TNSEKPTEHPATATARVDEH 316
            + E   + PA A A VDEH
Sbjct: 301 VDGE---QQPA-AAAVVDEH 316

[Close]

BLAST of Carg20555 vs. TrEMBL
Match: tr|E0CRD7|E0CRD7_VITVI (GrpE protein homolog OS=Vitis vinifera OX=29760 GN=VIT_18s0001g04190 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.9e-82
Identity = 181/316 (57.28%), Postives = 226/316 (71.52%), Query Frame = 0


Query: 3   ALALSNYTLFSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHSSTVR 62
           A +LSN+ LF+P+PS +                LH P H S+   P+L F  ++ S  +R
Sbjct: 2   AFSLSNHLLFTPKPSKT--------------LALH-PPHPSK---PILGFRLSTSSPILR 61

Query: 63  RSFLPCFSAQDSVPNVNKEED----DGEDGSKAGDELHGLSLQALINVYREAFLDGDQKT 122
           RSF P  + QDS P  N EE+    D +      D+     L++LI  Y++A LDGD+K 
Sbjct: 62  RSFKPFLALQDSTPYTNNEEEGSRYDVKTSKSEADQKPLSVLKSLIKAYKDAVLDGDEKA 121

Query: 123 ISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEKERLTVKNN 182
           +S++EA +   E EK  L QKVS  SAEITSGKE YIRLQADFDNFRKRSEKERLTV+ +
Sbjct: 122 VSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRLQADFDNFRKRSEKERLTVRTD 181

Query: 183 AQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWRISAVAAVG 242
           AQ EV+E+LLPMID+FE+A+QQI P+T+KEKKID SYQGIYKQFVE++RS  ++AVA VG
Sbjct: 182 AQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSCHVAAVATVG 241

Query: 243 RPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGKKNSPTTNS 302
           +PFDP+LHEA+AREESQE KEGIIIQE+RRGFLLG+RLLRPA VKVS GPG+K +    +
Sbjct: 242 KPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLLRPAMVKVSTGPGRKKTSAV-A 297

Query: 303 EKPTEHPATATARVDE 315
           +K T  PATA A VDE
Sbjct: 302 DKSTGQPATA-AGVDE 297

[Close]

BLAST of Carg20555 vs. TrEMBL
Match: tr|A0A2P4M1I8|A0A2P4M1I8_QUESU (GrpE protein homolog OS=Quercus suber OX=58331 GN=CFP56_48168 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 179/324 (55.25%), Postives = 232/324 (71.60%), Query Frame = 0


Query: 3   ALALSN----YTLFS-PRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASH 62
           A++LSN    ++LF+ P P  S  +    S  + +L F H P       + L + SP ++
Sbjct: 2   AVSLSNHYHCHSLFAPPHPRLSVSSSSPNSPKSKTLAFFHRPILG----FTLTNSSPVTN 61

Query: 63  --SSTVRRSFLPCFSAQDS-VPNVNKEEDDGED----GSKAGDELHGLSLQALINVYREA 122
             SS+  RSF    +AQDS VP  N  E+ GE+         D+ H  SL  LI VY+EA
Sbjct: 62  KCSSSSSRSFKSHLAAQDSEVPTTNDLEEAGENDVQTSESGADQQHLSSLTTLIKVYKEA 121

Query: 123 FLDGDQKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSEK 182
            L GD+KTIS +EA++ + E EK+ L Q V   S EITSGKE YIRLQADF+NFRKRSEK
Sbjct: 122 ILAGDEKTISDIEARIHVIENEKNELVQNVLTLSTEITSGKEKYIRLQADFENFRKRSEK 181

Query: 183 ERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSWR 242
           ERLT++++AQ E+IE+LLPM+D+FE+A+QQ+  +T+KE+KID SYQGIYKQFVE++R+ R
Sbjct: 182 ERLTIRSDAQGEIIESLLPMVDNFERAKQQLKLETEKEQKIDASYQGIYKQFVEIMRNLR 241

Query: 243 ISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPGK 302
           ++ VA VG+PFDPSLHEA+AREESQE KEG++IQE RRGFLLG+RLLRPA VKVS GPG+
Sbjct: 242 VAVVATVGKPFDPSLHEAIAREESQEFKEGVVIQEFRRGFLLGDRLLRPAMVKVSAGPGR 301

Query: 303 KNSPTTNSEKPTEHPATATARVDE 315
           K +P   +EK TEHPATA A +DE
Sbjct: 302 KKAPVA-TEKSTEHPATA-AGIDE 319

[Close]

BLAST of Carg20555 vs. TrEMBL
Match: tr|A0A2I4DYK2|A0A2I4DYK2_9ROSI (uncharacterized protein LOC108984656 OS=Juglans regia OX=51240 GN=LOC108984656 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 184/326 (56.44%), Postives = 231/326 (70.86%), Query Frame = 0


Query: 3   ALALSNYTL----FSPRPSTSSKAIESTSLVTPSLCFLHNPRHRSRHCYPLLSFSPASHS 62
           A++ SN++L     S   S S+K  ++ +L  P    LH   HR   C P+L F P  +S
Sbjct: 2   AVSPSNHSLLPLRLSASLSLSTKHSKALALSQP----LHY-HHRPLLCKPILGFLPLPNS 61

Query: 63  STV------RRSFLPCFSAQDSVPNVNKEEDDGEDG---SKAGDELHGLSLQALINVYRE 122
           S +      RR F   FS+QDS P  N  E+   +G   S+ GD+ H  SL+ALINVY++
Sbjct: 62  SPITMDNKCRRFFKSYFSSQDSAPTANGIEEASHNGVKTSEGGDQNHLSSLKALINVYKD 121

Query: 123 AFLDGDQKTISKVEAKLKIFEREKDGLFQKVSNTSAEITSGKENYIRLQADFDNFRKRSE 182
           A L GD+KT+S +EA++ I E E + L QKVS  S EITSGKE YIRLQADFDNFRKRSE
Sbjct: 122 AILVGDEKTVSDIEARVHIIESEWNELTQKVSALSLEITSGKEKYIRLQADFDNFRKRSE 181

Query: 183 KERLTVKNNAQKEVIENLLPMIDSFEKARQQIVPQTDKEKKIDVSYQGIYKQFVEVLRSW 242
           KERLT++++AQ EVIE+LLPM+D+FE+A+QQ+  +T+KEKKID SYQGIYKQFVE++RS 
Sbjct: 182 KERLTIRSDAQGEVIESLLPMVDNFERAKQQLKLETEKEKKIDASYQGIYKQFVEIMRSL 241

Query: 243 RISAVAAVGRPFDPSLHEAVAREESQEIKEGIIIQELRRGFLLGERLLRPARVKVSKGPG 302
            ++AV  VG+PFDPSLHEA+AREES E KEGI+I+E RRGF LG+RLLRPA VKVS GPG
Sbjct: 242 HVAAVPTVGKPFDPSLHEAIAREESHEFKEGIVIEEFRRGFQLGQRLLRPAMVKVSSGPG 301

Query: 303 -KKNSPTTNSEKPTEHPATATARVDE 315
            KK     +S K TE  ATA A VDE
Sbjct: 302 SKKVQVAADSYKSTEQTATA-AGVDE 321

The following BLAST results are available for this feature:

BLAST of Carg20555 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951572.1	5.0e-169	99.05	uncharacterized protein LOC111454347 isoform X2 [Cucurbita moschata]	[more]
XP_022951571.1	1.2e-167	98.73	uncharacterized protein LOC111454347 isoform X1 [Cucurbita moschata]	[more]
XP_023536677.1	2.4e-163	96.83	uncharacterized protein LOC111797984 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023536676.1	6.0e-162	96.52	uncharacterized protein LOC111797984 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023001896.1	2.0e-157	94.29	uncharacterized protein LOC111495941 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg20555 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36390.1	8.3e-57	51.17	Co-chaperone GrpE family protein	[more]
AT5G17710.2	6.8e-51	50.74	Co-chaperone GrpE family protein	[more]
AT4G26780.1	7.8e-07	24.83	Co-chaperone GrpE family protein	[more]
AT5G55200.1	8.7e-06	24.19	Co-chaperone GrpE family protein	[more]

BLAST of Carg20555 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2BNE2\|GRPE_PROMS	1.6e-33	43.26	Protein GrpE OS=Prochlorococcus marinus (strain AS9601) OX=146891 GN=grpE PE=3 S...	[more]
sp\|Q7V3Q4\|GRPE_PROMP	2.7e-33	37.13	Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-...	[more]
sp\|Q8DJB3\|GRPE_THEEB	2.7e-33	51.39	Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=grpE PE...	[more]
sp\|A8G203\|GRPE_PROM2	3.6e-33	40.70	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9215) OX=93060 GN=grpE PE=3 ...	[more]
sp\|A3PA63\|GRPE_PROM0	5.2e-32	40.10	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) OX=167546 GN=grpE PE=3...	[more]

BLAST of Carg20555 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDD3\|A0A1S3BDD3_CUCME	1.7e-117	74.06	GrpE protein homolog OS=Cucumis melo OX=3656 GN=LOC103488418 PE=3 SV=1	[more]
tr\|A0A0A0LQA8\|A0A0A0LQA8_CUCSA	1.1e-114	72.81	GrpE protein homolog OS=Cucumis sativus OX=3659 GN=Csa_2G315400 PE=3 SV=1	[more]
tr\|E0CRD7\|E0CRD7_VITVI	6.9e-82	57.28	GrpE protein homolog OS=Vitis vinifera OX=29760 GN=VIT_18s0001g04190 PE=3 SV=1	[more]
tr\|A0A2P4M1I8\|A0A2P4M1I8_QUESU	2.2e-80	55.25	GrpE protein homolog OS=Quercus suber OX=58331 GN=CFP56_48168 PE=3 SV=1	[more]
tr\|A0A2I4DYK2\|A0A2I4DYK2_9ROSI	1.4e-79	56.44	uncharacterized protein LOC108984656 OS=Juglans regia OX=51240 GN=LOC108984656 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0042803	protein homodimerization activity
GO:0000774	adenyl-nucleotide exchange factor activity
GO:0051087	chaperone binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009012	GrpE_head
IPR013805	GrpE_coiled_coil
IPR000740	GrpE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0042803	protein homodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20555-RA	Carg20555-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..304
None	No IPR available	PANTHER	PTHR21237:SF4	GRPE PROTEIN HOMOLOG	coord: 39..297
IPR000740	GrpE nucleotide exchange factor	PRINTS	PR00773	GRPEPROTEIN	coord: 265..284 score: 46.09 coord: 183..198 score: 35.74 coord: 155..171 score: 46.88 coord: 238..253 score: 50.2
IPR000740	GrpE nucleotide exchange factor	PFAM	PF01025	GrpE	coord: 133..286 e-value: 2.6E-39 score: 134.5
IPR000740	GrpE nucleotide exchange factor	PANTHER	PTHR21237	GRPE PROTEIN	coord: 39..297
IPR000740	GrpE nucleotide exchange factor	PROSITE	PS01071	GRPE	coord: 241..284
IPR000740	GrpE nucleotide exchange factor	HAMAP	MF_01151	GrpE	coord: 72..286 score: 17.402
IPR000740	GrpE nucleotide exchange factor	CDD	cd00446	GrpE	coord: 151..284 e-value: 3.51746E-44 score: 148.423
IPR013805	GrpE nucleotide exchange factor, coiled-coil	GENE3D	G3DSA:3.90.20.20		coord: 114..228 e-value: 1.2E-21 score: 78.4
IPR013805	GrpE nucleotide exchange factor, coiled-coil	SUPERFAMILY	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE	coord: 136..228
IPR009012	GrpE nucleotide exchange factor, head	GENE3D	G3DSA:2.30.22.10		coord: 231..286 e-value: 4.0E-19 score: 70.1
IPR009012	GrpE nucleotide exchange factor, head	SUPERFAMILY	SSF51064	Head domain of nucleotide exchange factor GrpE	coord: 233..288

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20555	Cla022074	Watermelon (97103) v1	carwmB0649
Carg20555	Csa2G315400	Cucumber (Chinese Long) v2	carcuB0669
Carg20555	MELO3C011373	Melon (DHL92) v3.5.1	carmeB0649
Carg20555	ClCG08G010900	Watermelon (Charleston Gray)	carwcgB0633
Carg20555	CSPI02G15970	Wild cucumber (PI 183967)	carcpiB0678
Carg20555	CmaCh12G001390	Cucurbita maxima (Rimu)	carcmaB0920
Carg20555	CsGy2G016570	Cucumber (Gy14) v2	carcgybB0645
Carg20555	MELO3C011373.2	Melon (DHL92) v3.6.1	carmedB0659
Carg20555	CsaV3_1G023030	Cucumber (Chinese Long) v3	carcucB0680
Carg20555	Cla97C08G153790	Watermelon (97103) v2	carwmbB0679
Carg20555	Bhi04G000593	Wax gourd	carwgoB0764

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20555	Wax gourd	carwgoB0765
Carg20555	Silver-seed gourd	carcarB164
Carg20555	Cucurbita maxima (Rimu)	carcmaB0921
Carg20555	Cucurbita moschata (Rifu)	carcmoB0893
Carg20555	Cucurbita moschata (Rifu)	carcmoB0894
Carg20555	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20555	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20555	Bottle gourd (USVL1VR-Ls)	carlsiB593