CmaCh12G001360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G001360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr12 : 586294 .. 587694 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGATTGGTTTCAGCTTTTTCCTCCGAATATGGCAACTCAGGAACATGGTTTTTCTTTCGTCAAACAATGCTTCTTCTGGCTTTTCATCGCCTTCAGAGTTAATTTTTTAGATTTTCCCGAAATTCCATGAATGTAGCTTGTAGGATGCATTTCAATGCGTATCGGTCCATAAAGATCTCAGTCAGTTTTTTTCCAATTGCCAAAAGTACGGGCTGTAATGATGTAGGTTCTGATATCCCAATTGGTCGTACTTTAGTTTTGTTTAGCTTTAATGTTCAGGTTGCTAAATTGAATTCTCATCGAGTTGATGGTTTGTTTGCAAACAAACTGGCAAAGTTTAATGTGAAGTTTTGTGGATAGCGACTGTAAGCTGTTCGATGAAATTCCTGTGAGAACATGCCAGATTACACAGCTCTGGTTTAGGGCGTATTGTTGGTCAGATTAGTGGAGTGATCTTTTTGTGGCGTTCAGATCGATGCTTGATGAGGGAATACTACCTGTTAAACACATTGAGCTTACGATTCTTATAGTATGTTCTAGAAGACAATTGGTGAAGACAAGTAAATGGTTTTGTGGGTATGTCACTGAGAAGAGGTTGATCTCTGATATTTTCATTAGGAATGCTTTCATGAACTTCTATGGTAATTGTGGGGATTTTAGATTTTCGATCAATGTTCTTTATTCGAGTGTAAAAGATGTGGTTTCGTGGACTGTGCTTGCTTCCGCTTACATGGAAAAAGGTATTTTCGATGTGGCGATGGAAGCATTTCACTCGATGCGGTCAAGTGGGTTGAGGCCCGATTTGATATATATATACATATATATATATATATATATATATATTTTATAAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGAATGAGGGAGGTATAACTATAGGAAGTAAAAATGCACTAATCTCAGGGTTTTCTCCCTATAGAGAGATTGACGCTGCTATCCAATACCTGGACCACACAAGAAAAGGGTTGAGCCCAAGGGTTCATTGAATGGAGTCATATCAGGCTGCGTTCACAATGGGCATTCACAAATGCTTTGGATGCATTTGTTAACATGCTGTTGTTTCCTAGAGTCCAAATAAGATGGTTCTATTTCTCAAATTTTTCTACGAAGATACGAAAGAATCAAAATCCGAATTCTTCAACTCGTAAAGGCAAAGAAAAAAGGGATTTGCTTCAAATAAAATCTCTTTCTCAAATCAAATATTTAGTGGTGTTTATGGGTTCTGTCTGTCTGTCTCTCTCTTTTTTTTCAATCCACGCTATTTTGTGTTTAAAATTTCTTCCATGTTGAAATTCAGGGCGAGCTTTTGATATTGATTCTCTTTGA

mRNA sequence

ATGTGGATTGGTTTCAGCTTTTTCCTCCGAATATGGCAACTCAGGAACATGGTTGCTAAATTGAATTCTCATCGAGTTGATGGTTTGTTTGCAAACAAACTGGCAAAATCGATGCTTGATGAGGGAATACTACCTGTTAAACACATTGAGCTTACGATTCTTATAGTATGTTCTAGAAGACAATTGGTGAAGACAAGTAAATGGTTTTGTGGGTATGTCACTGAGAAGAGGTTGATCTCTGATATTTTCATTAGGAATGCTTTCATGAACTTCTATGGTAATTGTGGGGATTTTAGATTTTCGATCAATGTTCTTTATTCGAGTGTAAAAGATGTGGTTTCGTGGACTGTGCTTGCTTCCGCTTACATGGAAAAAGGGCGAGCTTTTGATATTGATTCTCTTTGA

Coding sequence (CDS)

ATGTGGATTGGTTTCAGCTTTTTCCTCCGAATATGGCAACTCAGGAACATGGTTGCTAAATTGAATTCTCATCGAGTTGATGGTTTGTTTGCAAACAAACTGGCAAAATCGATGCTTGATGAGGGAATACTACCTGTTAAACACATTGAGCTTACGATTCTTATAGTATGTTCTAGAAGACAATTGGTGAAGACAAGTAAATGGTTTTGTGGGTATGTCACTGAGAAGAGGTTGATCTCTGATATTTTCATTAGGAATGCTTTCATGAACTTCTATGGTAATTGTGGGGATTTTAGATTTTCGATCAATGTTCTTTATTCGAGTGTAAAAGATGTGGTTTCGTGGACTGTGCTTGCTTCCGCTTACATGGAAAAAGGGCGAGCTTTTGATATTGATTCTCTTTGA

Protein sequence

MWIGFSFFLRIWQLRNMVAKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNCGDFRFSINVLYSSVKDVVSWTVLASAYMEKGRAFDIDSL

Homology

[Close]

BLAST of CmaCh12G001360 vs. Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1


Query: 31  ANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMN 90
           A KL + M +EGI P  +    +L  C+R +L+   K    ++ E  L  DIF+ NA M+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 91  FYGNCGDFRFSINVLYSS--VKDVVSWTVLASAYMEKGRAFDIDSL 135
            Y  CG  +    +++S   VKD++SW  +   Y +   A +  SL
Sbjct: 441 MYAKCGSMQ-EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSL 485

[Close]

BLAST of CmaCh12G001360 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 32/105 (30.48%), Postives = 50/105 (47.62%), Query Frame = 1


Query: 31  ANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMN 90
           A +L   M  +G  P      ++L  C     +   K   GY+  K+LI ++ + NA ++
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 352

Query: 91  FYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKGRAFDIDSL 135
            Y  CG    + +V  +   +DVVSWT + SAY   GR  D  +L
Sbjct: 353 MYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVAL 397

[Close]

BLAST of CmaCh12G001360 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-06
Identity = 30/92 (32.61%), Postives = 46/92 (50.00%), Query Frame = 1


Query: 36  KSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNC 95
           + ML   + P K+    +L  C+     +  +   G   +  L++D+F+ N  +N YG  
Sbjct: 129 REMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRS 188

Query: 96  GDFRFSINVL-YSSVKDVVSWTVLASAYMEKG 127
           G F  +  VL    V+D VSW  L SAY+EKG
Sbjct: 189 GYFEIARKVLDRMPVRDAVSWNSLLSAYLEKG 220

[Close]

BLAST of CmaCh12G001360 vs. TrEMBL
Match: A0A0A0KFW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399730 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 19  AKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRL 78
           A   S + + LFA    +SM+DEGILP K++  TIL  CSRRQ+VKT K   GY   KR+
Sbjct: 142 AYCRSEKWNELFA--AFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRM 201

Query: 79  ISDIFIRNAFMNFYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
           +SDI I NA M+FYGNCGD   SINV  S S KDVVSWT L SAY+E+G
Sbjct: 202 VSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEG 248

[Close]

BLAST of CmaCh12G001360 vs. TrEMBL
Match: M5XXF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001949mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 44/109 (40.37%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 19  AKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRL 78
           A   S + D LF   + + M+DEG+LP K++  T+L  C+  ++++T K   G+V    +
Sbjct: 154 AYCRSEQWDDLFL--VFRLMVDEGMLPDKYVVPTVLKACALVRMLRTGKMIHGFVIRMGM 213

Query: 79  ISDIFIRNAFMNFYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
            SD+F+ NA ++FY NCGDF F+++V  +   +DVVSWT L SA+M +G
Sbjct: 214 NSDVFVGNALIDFYANCGDFGFALSVFDAMGERDVVSWTALVSAFMNEG 260

[Close]

BLAST of CmaCh12G001360 vs. TrEMBL
Match: W9QZF4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014932 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-14
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 38  MLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNCGD 97
           M+DEG+LP K+I  T+L  CS  ++ K  K   GYV  K L  DIF+ N+ +N Y NC D
Sbjct: 174 MVDEGVLPDKYIVPTVLKACSALKMTKDGKMLHGYVVRKGLDLDIFVGNSLINLYANCED 233

Query: 98  FRFSINVLYS-SVKDVVSWTVLASAYMEKGRAFDIDSL 135
            R+S +V      KDVVSWT L S YME G   + D +
Sbjct: 234 LRYSRSVFDGMREKDVVSWTSLVSGYMEAGLLDEADEV 271

[Close]

BLAST of CmaCh12G001360 vs. TrEMBL
Match: A0A164UXP7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023120 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 38  MLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNCGD 97
           M+ +G+LP +++   IL  CS  +L +  K   GYV  +   SD+F+ NA ++ Y NCG+
Sbjct: 81  MVLDGVLPDRYLVPRILKACSAVKLERRGKMIHGYVVRRDSGSDVFVSNALIDVYANCGN 140

Query: 98  FRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
            R++  V  +   +DVVSWT L SAYM++G
Sbjct: 141 LRYARMVFDAMQDRDVVSWTALVSAYMDEG 170

[Close]

BLAST of CmaCh12G001360 vs. TrEMBL
Match: V7BJV8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G027400g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-09
Identity = 36/107 (33.64%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 25  RVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFI 84
           R D +   +L K M +EG+ P      ++L+VCSR   +   K+  GY+   R+  D+FI
Sbjct: 286 RGDSISCIRLLKRMYNEGVKPTLTTLSSLLMVCSRSARLLEGKFVHGYIIRNRIQPDVFI 345

Query: 85  RNAFMNFYGNCGDFRFSINVLYSSVKD-VVSWTVLASAYMEKGRAFD 131
            N+ M+ Y  CG    + N+     K  VVSW V+ S Y+ +G+ F+
Sbjct: 346 NNSLMDLYFKCGRVGLAENIFKLVPKSKVVSWNVMISGYVAEGKLFE 392

[Close]

BLAST of CmaCh12G001360 vs. TAIR10
Match: AT4G18750.1 (AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1


Query: 31  ANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMN 90
           A KL + M +EGI P  +    +L  C+R +L+   K    ++ E  L  DIF+ NA M+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 91  FYGNCGDFRFSINVLYSS--VKDVVSWTVLASAYMEKGRAFDIDSL 135
            Y  CG  +    +++S   VKD++SW  +   Y +   A +  SL
Sbjct: 441 MYAKCGSMQ-EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSL 485

[Close]

BLAST of CmaCh12G001360 vs. TAIR10
Match: AT3G49142.1 (AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 32/105 (30.48%), Postives = 50/105 (47.62%), Query Frame = 1


Query: 31  ANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMN 90
           A +L   M  +G  P      ++L  C     +   K   GY+  K+LI ++ + NA ++
Sbjct: 293 AVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 352

Query: 91  FYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKGRAFDIDSL 135
            Y  CG    + +V  +   +DVVSWT + SAY   GR  D  +L
Sbjct: 353 MYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVAL 397

[Close]

BLAST of CmaCh12G001360 vs. TAIR10
Match: AT4G18840.1 (AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 30/92 (32.61%), Postives = 46/92 (50.00%), Query Frame = 1


Query: 36  KSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNC 95
           + ML   + P K+    +L  C+     +  +   G   +  L++D+F+ N  +N YG  
Sbjct: 129 REMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRS 188

Query: 96  GDFRFSINVL-YSSVKDVVSWTVLASAYMEKG 127
           G F  +  VL    V+D VSW  L SAY+EKG
Sbjct: 189 GYFEIARKVLDRMPVRDAVSWNSLLSAYLEKG 220

[Close]

BLAST of CmaCh12G001360 vs. TAIR10
Match: AT4G38010.1 (AT4G38010.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 26/92 (28.26%), Postives = 45/92 (48.91%), Query Frame = 1


Query: 36  KSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNC 95
           K+ +  G  P       +   C +   ++  K   G VT+     DI+++N+ ++FYG C
Sbjct: 95  KTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVC 154

Query: 96  GDFRFSINVL-YSSVKDVVSWTVLASAYMEKG 127
           G+ R +  V     V+DVVSWT + + +   G
Sbjct: 155 GESRNACKVFGEMPVRDVVSWTGIITGFTRTG 186

[Close]

BLAST of CmaCh12G001360 vs. NCBI nr
Match: gi|449458139|ref|XP_004146805.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.0e-22
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 19  AKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRL 78
           A   S + + LFA    +SM+DEGILP K++  TIL  CSRRQ+VKT K   GY   KR+
Sbjct: 142 AYCRSEKWNELFA--AFRSMVDEGILPDKYLVPTILKACSRRQMVKTGKMAHGYAIRKRM 201

Query: 79  ISDIFIRNAFMNFYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
           +SDI I NA M+FYGNCGD   SINV  S S KDVVSWT L SAY+E+G
Sbjct: 202 VSDIVIENALMDFYGNCGDLSSSINVFDSMSEKDVVSWTALVSAYIEEG 248

[Close]

BLAST of CmaCh12G001360 vs. NCBI nr
Match: gi|659089185|ref|XP_008445371.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.8e-21
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 19  AKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRL 78
           A   S + + LFA    +SM+DEGILP K++  T+L  CSRRQ+VKT K   GY   KR+
Sbjct: 140 AYCRSEKWNELFA--AFRSMVDEGILPDKYLVPTVLKACSRRQMVKTGKMVHGYAIRKRM 199

Query: 79  ISDIFIRNAFMNFYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
           +SDI I NA M+FYGNC D   SINV  S S KDVVSWT L SAY+E+G
Sbjct: 200 VSDIVIGNALMDFYGNCRDLGSSINVFDSMSEKDVVSWTALVSAYIEEG 246

[Close]

BLAST of CmaCh12G001360 vs. NCBI nr
Match: gi|1009136519|ref|XP_015885569.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Ziziphus jujuba])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 38  MLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNCGD 97
           M+DEG+LP K++  TIL  CS  Q+ ++ K   GY   K L  D+F+ NA ++ Y NCGD
Sbjct: 171 MIDEGVLPDKYLVPTILKACSAMQMTRSGKKIHGYAIRKGLDLDVFVGNALIDMYANCGD 230

Query: 98  FRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
            R S +V  S   KDVV+WT L SAYM++G
Sbjct: 231 LRCSTSVFNSMGEKDVVTWTALVSAYMDEG 260

[Close]

BLAST of CmaCh12G001360 vs. NCBI nr
Match: gi|596279200|ref|XP_007225219.1| (hypothetical protein PRUPE_ppa001949mg [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 44/109 (40.37%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 19  AKLNSHRVDGLFANKLAKSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRL 78
           A   S + D LF   + + M+DEG+LP K++  T+L  C+  ++++T K   G+V    +
Sbjct: 154 AYCRSEQWDDLFL--VFRLMVDEGMLPDKYVVPTVLKACALVRMLRTGKMIHGFVIRMGM 213

Query: 79  ISDIFIRNAFMNFYGNCGDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
            SD+F+ NA ++FY NCGDF F+++V  +   +DVVSWT L SA+M +G
Sbjct: 214 NSDVFVGNALIDFYANCGDFGFALSVFDAMGERDVVSWTALVSAFMNEG 260

[Close]

BLAST of CmaCh12G001360 vs. NCBI nr
Match: gi|658051661|ref|XP_008361565.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Malus domestica])

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 36  KSMLDEGILPVKHIELTILIVCSRRQLVKTSKWFCGYVTEKRLISDIFIRNAFMNFYGNC 95
           K M+DEG++P K++  T+L  C+  ++++  K   G+V  K L SD+++ NA ++FY NC
Sbjct: 170 KLMVDEGVMPDKYVVPTVLKACALVRMLRIGKMIHGFVIRKXLDSDVYVGNALIDFYANC 229

Query: 96  GDFRFSINVLYS-SVKDVVSWTVLASAYMEKG 127
           GDFR +++V  +   +DVVSWT L SA+M +G
Sbjct: 230 GDFRSAMSVFDAMRERDVVSWTALVSAFMNEG 261

The following BLAST results are available for this feature:

BLAST of CmaCh12G001360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP320_ARATH	3.1e-07	32.08	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
PP271_ARATH	3.5e-06	30.48	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
PP321_ARATH	3.5e-06	32.61	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh12G001360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW8_CUCSA	1.4e-22	57.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399730 PE=4 SV=1	[more]
M5XXF7_PRUPE	2.4e-14	40.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001949mg PE=4 SV=1	[more]
W9QZF4_9ROSA	7.0e-14	45.92	Uncharacterized protein OS=Morus notabilis GN=L484_014932 PE=4 SV=1	[more]
A0A164UXP7_DAUCA	1.4e-09	40.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023120 PE=4 SV=1	[more]
V7BJV8_PHAVU	5.2e-09	33.64	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G027400g PE=4 SV=1	[more]

BLAST of CmaCh12G001360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18750.1	1.8e-08	32.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49142.1	2.0e-07	30.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18840.1	2.0e-07	32.61	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G38010.1	1.3e-06	28.26	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

BLAST of CmaCh12G001360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458139\|ref\|XP_004146805.1\|	2.0e-22	57.80	PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis s...	[more]
gi\|659089185\|ref\|XP_008445371.1\|	3.8e-21	55.96	PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis m...	[more]
gi\|1009136519\|ref\|XP_015885569.1\|	3.5e-14	47.78	PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Ziziphus ...	[more]
gi\|596279200\|ref\|XP_007225219.1\|	3.5e-14	40.37	hypothetical protein PRUPE_ppa001949mg [Prunus persica]	[more]
gi\|658051661\|ref\|XP_008361565.1\|	1.0e-13	42.39	PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Malus dom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G001360.1	CmaCh12G001360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 38..126 score: 4.4
None	No IPR available	PANTHER	PTHR24015:SF616	SUBFAMILY NOT NAMED	coord: 38..126 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G001360	Lsi08G009390	Bottle gourd (USVL1VR-Ls)	cmalsiB185
CmaCh12G001360	Cp4.1LG11g04230	Cucurbita pepo (Zucchini)	cmacpeB172
CmaCh12G001360	CsaV3_6G035680	Cucumber (Chinese Long) v3	cmacucB0225
CmaCh12G001360	Cla97C08G153750	Watermelon (97103) v2	cmawmbB195
CmaCh12G001360	Bhi04G000598	Wax gourd	cmawgoB0215
CmaCh12G001360	Carg09234	Silver-seed gourd	carcmaB0185

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh12G001360	CmaCh05G004760	Cucurbita maxima (Rimu)	cmacmaB192

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G001360	Melon (DHL92) v3.5.1	cmameB157
CmaCh12G001360	Watermelon (Charleston Gray)	cmawcgB170
CmaCh12G001360	Watermelon (97103) v1	cmawmB149
CmaCh12G001360	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G001360	Cucumber (Gy14) v2	cgybcmaB184
CmaCh12G001360	Melon (DHL92) v3.6.1	cmamedB171
CmaCh12G001360	Silver-seed gourd	carcmaB0920
CmaCh12G001360	Wax gourd	cmawgoB0197
CmaCh12G001360	Cucurbita moschata (Rifu)	cmacmoB176
CmaCh12G001360	Cucurbita moschata (Rifu)	cmacmoB192