CmaCh10G003770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Fiber protein Fb15
Location	Cma_Chr10 : 1732749 .. 1733021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

mRNA sequence

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Coding sequence (CDS)

ATGGCAATGAGGCAATTCTACTCCGAAATTAAGGGTTTGAAAGTTAAGGAGCTGCCGGCGTACGTGAAGCCGTTGCTCTCCGTTGATTATGTTAAGAAGGCAGGGCAGAGAGGTCTTGACAATTATAACGCGAAGTATATTCAGACCGGTTCTATTGACCCTCTGCTCCATGTTTGCTTTGGCGGCATGATCCTTTCCTATCTTTTGGCGCTCCCTGAGGAACGGCGCCATCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Protein sequence

MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCFGGMILSYLLALPEERRHLEHQQHAKEHGGH

Homology

[Close]

BLAST of CmaCh10G003770 vs. TrEMBL
Match: A0A0A0LXD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G424875 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-38
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAM+QF+SEIKGLKVKELPAYVKP+LS+D  KKA +R LDNYNAKYIQT SIDPLLHVCF
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKAVERSLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. TrEMBL
Match: A9PIP6_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA+R+ YSEIKGLKVKELP +VKP+LS+ YVKKA QRG+DNY+AKYI+T SIDPLLHVC+
Sbjct: 1  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLIALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. TrEMBL
Match: B9IN74_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13940g PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1   MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
           MA+R+ YSEIKGLKVKELP +VKP+LS+ YVKKA QRG+DNY+AKYI+T SIDPLLHVC+
Sbjct: 56  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 115

Query: 61  GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 116 GGMILSYLIALPEERRHLEHQQHAKEHGGH 145

[Close]

BLAST of CmaCh10G003770 vs. TrEMBL
Match: M5XTW0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014047mg PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.2e-37
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA+R+FY+EIKGLKVKELP+YVKP+LSVDY KK  QRGLDNY+AKYIQT S+DPL HVCF
Sbjct: 1  MALRRFYNEIKGLKVKELPSYVKPMLSVDYAKKTVQRGLDNYHAKYIQTNSVDPLFHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHG 89
          GGMI SYL+ALPEERRHLEHQQHAKEHG
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHG 88

[Close]

BLAST of CmaCh10G003770 vs. TrEMBL
Match: A0A061GRJ5_THECC (Fiber protein Fb15 OS=Theobroma cacao GN=TCM_039444 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAMR+ Y+EIKG+KVKE+P YVKP+LS+DYVKKA QRGLDNY+AKYIQT SIDPL HVCF
Sbjct: 1  MAMRKVYNEIKGMKVKEVPNYVKPMLSMDYVKKAFQRGLDNYHAKYIQTDSIDPLYHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHG H
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGHH 90

[Close]

BLAST of CmaCh10G003770 vs. TAIR10
Match: AT4G30010.1 (AT4G30010.1 unknown protein)

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-33
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA+R+ YSEI+G KV ELP Y+K   S++ VK + +RGLDNYN KYIQT S+DP+LH+CF
Sbjct: 1  MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GM  SYL+ALP ERRHLEHQQHAKEHGGH
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: gi|449457195|ref|XP_004146334.1| (PREDICTED: uncharacterized protein LOC101202935 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-38
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAM+QF+SEIKGLKVKELPAYVKP+LS+D  KKA +R LDNYNAKYIQT SIDPLLHVCF
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKAVERSLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: gi|1009105841|ref|XP_015894259.1| (PREDICTED: uncharacterized protein LOC107428239 [Ziziphus jujuba])

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-38
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA R FY+EIKGLKVKELP YVKP+LS++YVKK+ QRGLDNYNAKYIQT SIDPL HVCF
Sbjct: 1  MAWRNFYNEIKGLKVKELPNYVKPMLSMEYVKKSVQRGLDNYNAKYIQTSSIDPLYHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: gi|224144334|ref|XP_002325265.1| (hypothetical protein POPTR_0018s13940g [Populus trichocarpa])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1   MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
           MA+R+ YSEIKGLKVKELP +VKP+LS+ YVKKA QRG+DNY+AKYI+T SIDPLLHVC+
Sbjct: 56  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 115

Query: 61  GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 116 GGMILSYLIALPEERRHLEHQQHAKEHGGH 145

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: gi|118488880|gb|ABK96249.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MA+R+ YSEIKGLKVKELP +VKP+LS+ YVKKA QRG+DNY+AKYI+T SIDPLLHVC+
Sbjct: 1  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLIALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of CmaCh10G003770 vs. NCBI nr
Match: gi|659107186|ref|XP_008453564.1| (PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1


Query: 1  MAMRQFYSEIKGLKVKELPAYVKPLLSVDYVKKAGQRGLDNYNAKYIQTGSIDPLLHVCF 60
          MAM+QF+SEIKGLKVKELPAYVKP+LS+D  KK  QR LDNY+AKYIQT SIDPL HVCF
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKVVQRSLDNYHAKYIQTSSIDPLFHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

The following BLAST results are available for this feature:

BLAST of CmaCh10G003770 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh10G003770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXD4_CUCSA	1.2e-38	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G424875 PE=4 SV=1	[more]
A9PIP6_9ROSI	1.8e-37	83.33	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
B9IN74_POPTR	1.8e-37	83.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13940g PE=4 SV=1	[more]
M5XTW0_PRUPE	5.2e-37	84.09	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014047mg PE=4 SV=1	[more]
A0A061GRJ5_THECC	1.2e-36	83.33	Fiber protein Fb15 OS=Theobroma cacao GN=TCM_039444 PE=4 SV=1	[more]

BLAST of CmaCh10G003770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30010.1	4.1e-33	68.89	unknown protein	[more]

BLAST of CmaCh10G003770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457195\|ref\|XP_004146334.1\|	1.8e-38	86.67	PREDICTED: uncharacterized protein LOC101202935 [Cucumis sativus]	[more]
gi\|1009105841\|ref\|XP_015894259.1\|	6.7e-38	85.56	PREDICTED: uncharacterized protein LOC107428239 [Ziziphus jujuba]	[more]
gi\|224144334\|ref\|XP_002325265.1\|	2.6e-37	83.33	hypothetical protein POPTR_0018s13940g [Populus trichocarpa]	[more]
gi\|118488880\|gb\|ABK96249.1\|	2.6e-37	83.33	unknown [Populus trichocarpa x Populus deltoides]	[more]
gi\|659107186\|ref\|XP_008453564.1\|	2.6e-37	84.44	PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005753	mitochondrial proton-transporting ATP synthase complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003770.1	CmaCh10G003770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36059	FAMILY NOT NAMED	coord: 2..90 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G003770	Cucsa.081330	Cucumber (Gy14) v1	cgycmaB0146
CmaCh10G003770	Cla018853	Watermelon (97103) v1	cmawmB071
CmaCh10G003770	MELO3C017430	Melon (DHL92) v3.5.1	cmameB067
CmaCh10G003770	ClCG06G013580	Watermelon (Charleston Gray)	cmawcgB071
CmaCh10G003770	CSPI01G20540	Wild cucumber (PI 183967)	cmacpiB060
CmaCh10G003770	CmoCh11G003670	Cucurbita moschata (Rifu)	cmacmoB068
CmaCh10G003770	CmoCh10G004070	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G003770	Lsi06G012010	Bottle gourd (USVL1VR-Ls)	cmalsiB075
CmaCh10G003770	Cp4.1LG18g06340	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G003770	Cp4.1LG04g13150	Cucurbita pepo (Zucchini)	cmacpeB092
CmaCh10G003770	MELO3C017430.2	Melon (DHL92) v3.6.1	cmamedB070
CmaCh10G003770	CsaV3_1G031860	Cucumber (Chinese Long) v3	cmacucB0068
CmaCh10G003770	Cla97C06G123060	Watermelon (97103) v2	cmawmbB081
CmaCh10G003770	Bhi02G000541	Wax gourd	cmawgoB0076
CmaCh10G003770	CsGy1G020360	Cucumber (Gy14) v2	cgybcmaB015
CmaCh10G003770	Carg15224	Silver-seed gourd	carcmaB1091
CmaCh10G003770	Carg09049	Silver-seed gourd	carcmaB0828

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh10G003770	CmaCh11G003660	Cucurbita maxima (Rimu)	cmacmaB072

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G003770	Cucurbita maxima (Rimu)	cmacmaB117
CmaCh10G003770	Cucumber (Gy14) v1	cgycmaB0174
CmaCh10G003770	Cucurbita moschata (Rifu)	cmacmoB096
CmaCh10G003770	Wild cucumber (PI 183967)	cmacpiB075
CmaCh10G003770	Cucumber (Chinese Long) v2	cmacuB058
CmaCh10G003770	Cucumber (Chinese Long) v2	cmacuB077
CmaCh10G003770	Melon (DHL92) v3.5.1	cmameB075
CmaCh10G003770	Watermelon (Charleston Gray)	cmawcgB045
CmaCh10G003770	Watermelon (97103) v1	cmawmB067
CmaCh10G003770	Cucurbita pepo (Zucchini)	cmacpeB076
CmaCh10G003770	Bottle gourd (USVL1VR-Ls)	cmalsiB050
CmaCh10G003770	Cucumber (Gy14) v2	cgybcmaB155
CmaCh10G003770	Cucumber (Gy14) v2	cgybcmaB156
CmaCh10G003770	Melon (DHL92) v3.6.1	cmamedB080
CmaCh10G003770	Cucumber (Chinese Long) v3	cmacucB0083
CmaCh10G003770	Cucumber (Chinese Long) v3	cmacucB0084
CmaCh10G003770	Watermelon (97103) v2	cmawmbB057