Carg09049 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09049
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Fiber protein Fb15
Location	Cucurbita_argyrosperma_scaffold_063 : 282155 .. 282427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGAGGCAATTCTTCTCGGAAATCAGGGGCTTGAAGGTTAAGGAGCTGCCAGGCTACGTGAAGCCGATGCTCACCATTGACTCTGTGAAGAAGGCAGTGCAGAGAGGTCTCGACAACTACCACGCCAAGTACATTCAGACCAGCTCGATTGACCCTCTTCTCCATGTCTGCTATGGCGGTATGATCTTATCCTACCTCCTTGCGCTCCCTGAGGAACGGCGCCACCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

mRNA sequence

ATGGCAATGAGGCAATTCTTCTCGGAAATCAGGGGCTTGAAGGTTAAGGAGCTGCCAGGCTACGTGAAGCCGATGCTCACCATTGACTCTGTGAAGAAGGCAGTGCAGAGAGGTCTCGACAACTACCACGCCAAGTACATTCAGACCAGCTCGATTGACCCTCTTCTCCATGTCTGCTATGGCGGTATGATCTTATCCTACCTCCTTGCGCTCCCTGAGGAACGGCGCCACCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Coding sequence (CDS)

ATGGCAATGAGGCAATTCTTCTCGGAAATCAGGGGCTTGAAGGTTAAGGAGCTGCCAGGCTACGTGAAGCCGATGCTCACCATTGACTCTGTGAAGAAGGCAGTGCAGAGAGGTCTCGACAACTACCACGCCAAGTACATTCAGACCAGCTCGATTGACCCTCTTCTCCATGTCTGCTATGGCGGTATGATCTTATCCTACCTCCTTGCGCTCCCTGAGGAACGGCGCCACCTTGAACATCAGCAACACGCCAAAGAGCATGGTGGCCACTGA

Protein sequence

MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCYGGMILSYLLALPEERRHLEHQQHAKEHGGH

Homology

[Close]

BLAST of Carg09049 vs. NCBI nr
Match: XP_023531935.1 (uncharacterized protein LOC111794052 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-44
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGM+LSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMVLSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. NCBI nr
Match: XP_022933862.1 (uncharacterized protein LOC111441149 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNY+AKYIQTSSIDPLLHVCY
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYNAKYIQTSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. NCBI nr
Match: XP_022974229.1 (uncharacterized protein LOC111472849 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 4.3e-41
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMRQFFSEIRGLKVKELPGYVKPML+ID  KKAVQRGLDNY+AKYIQT SIDPLLHVCY
Sbjct: 1  MAMRQFFSEIRGLKVKELPGYVKPMLSIDYAKKAVQRGLDNYNAKYIQTGSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. NCBI nr
Match: XP_023515839.1 (uncharacterized protein LOC111779885 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMRQF+SEI+GLKVKELP YVKPML++D VKKAVQRGLDNY+AKYIQTSSIDPLLHVC+
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. NCBI nr
Match: XP_022922030.1 (uncharacterized protein LOC111430103 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 3.1e-39
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMRQF+SEI+GLKVKELP YVKPML++D VKKAVQRGLDNY+AKYIQT SIDPLLHVC+
Sbjct: 1  MAMRQFYSEIKGLKVKELPAYVKPMLSVDYVKKAVQRGLDNYNAKYIQTGSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYLLALPEERRHL HQQHAKEHGGH
Sbjct: 61 GGMILSYLLALPEERRHLAHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. TAIR10
Match: AT4G30010.1 (unknown protein)

HSP 1 Score: 140.6 bits (353), Expect = 4.8e-34
Identity = 62/90 (68.89%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MA+R+ +SEIRG KV ELPGY+K   ++++VK +V+RGLDNY+ KYIQTSS+DP+LH+C+
Sbjct: 1  MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GM  SYL+ALP ERRHLEHQQHAKEHGGH
Sbjct: 61 YGMAFSYLVALPNERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. TrEMBL
Match: tr|A0A1S3BWJ6|A0A1S3BWJ6_CUCME (uncharacterized protein LOC103494239 OS=Cucumis melo OX=3656 GN=LOC103494239 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.0e-39
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAM+QFFSEI+GLKVKELP YVKPML+ID+ KK VQR LDNYHAKYIQTSSIDPL HVC+
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKVVQRSLDNYHAKYIQTSSIDPLFHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. TrEMBL
Match: tr|A0A0A0LXD4|A0A0A0LXD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G424875 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAM+QFFSEI+GLKVKELP YVKPML+ID+ KKAV+R LDNY+AKYIQTSSIDPLLHVC+
Sbjct: 1  MAMKQFFSEIKGLKVKELPAYVKPMLSIDAAKKAVERSLDNYNAKYIQTSSIDPLLHVCF 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMIFSYLVALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. TrEMBL
Match: tr|A9PIP6|A9PIP6_9ROSI (Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MA+R+ +SEI+GLKVKELP +VKPML+I  VKKAVQRG+DNYHAKYI+TSSIDPLLHVCY
Sbjct: 1  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
          GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 61 GGMILSYLIALPEERRHLEHQQHAKEHGGH 90

[Close]

BLAST of Carg09049 vs. TrEMBL
Match: tr|B9IN74|B9IN74_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G142500v3 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
           MA+R+ +SEI+GLKVKELP +VKPML+I  VKKAVQRG+DNYHAKYI+TSSIDPLLHVCY
Sbjct: 56  MALRKLYSEIKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCY 115

Query: 61  GGMILSYLLALPEERRHLEHQQHAKEHGGH 91
           GGMILSYL+ALPEERRHLEHQQHAKEHGGH
Sbjct: 116 GGMILSYLIALPEERRHLEHQQHAKEHGGH 145

[Close]

BLAST of Carg09049 vs. TrEMBL
Match: tr|F6I5N3|F6I5N3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0103g00630 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.3e-37
Identity = 74/89 (83.15%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MAMRQFFSEIRGLKVKELPGYVKPMLTIDSVKKAVQRGLDNYHAKYIQTSSIDPLLHVCY 60
          MAMR F++EIRGLKVKELP +VKPM TID +KK++ +GLDNYHAKYIQTSSIDPLLHVCY
Sbjct: 1  MAMRNFYNEIRGLKVKELPAHVKPMFTIDYIKKSINKGLDNYHAKYIQTSSIDPLLHVCY 60

Query: 61 GGMILSYLLALPEERRHLEHQQHAKEHGG 90
          GG+I SYL+ALPEERRHLEHQQHAKEHGG
Sbjct: 61 GGIIFSYLVALPEERRHLEHQQHAKEHGG 89

The following BLAST results are available for this feature:

BLAST of Carg09049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531935.1	3.2e-44	98.89	uncharacterized protein LOC111794052 [Cucurbita pepo subsp. pepo]	[more]
XP_022933862.1	1.6e-43	98.89	uncharacterized protein LOC111441149 [Cucurbita moschata]	[more]
XP_022974229.1	4.3e-41	93.33	uncharacterized protein LOC111472849 [Cucurbita maxima]	[more]
XP_023515839.1	2.2e-40	91.11	uncharacterized protein LOC111779885 [Cucurbita pepo subsp. pepo]	[more]
XP_022922030.1	3.1e-39	88.89	uncharacterized protein LOC111430103 [Cucurbita moschata]	[more]

BLAST of Carg09049 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30010.1	4.8e-34	68.89	unknown protein	[more]

BLAST of Carg09049 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09049 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWJ6\|A0A1S3BWJ6_CUCME	6.0e-39	86.67	uncharacterized protein LOC103494239 OS=Cucumis melo OX=3656 GN=LOC103494239 PE=...	[more]
tr\|A0A0A0LXD4\|A0A0A0LXD4_CUCSA	1.0e-38	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G424875 PE=4 SV=1	[more]
tr\|A9PIP6\|A9PIP6_9ROSI	3.9e-38	85.56	Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 ...	[more]
tr\|B9IN74\|B9IN74_POPTR	3.9e-38	85.56	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G142500v3 PE=...	[more]
tr\|F6I5N3\|F6I5N3_VITVI	3.3e-37	83.15	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0103g00630 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09049-RA	Carg09049-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36059	FAMILY NOT NAMED	coord: 1..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09049	Cla018853	Watermelon (97103) v1	carwmB0594
Carg09049	MELO3C017430	Melon (DHL92) v3.5.1	carmeB0599
Carg09049	ClCG06G013580	Watermelon (Charleston Gray)	carwcgB0581
Carg09049	CSPI01G20540	Wild cucumber (PI 183967)	carcpiB0625
Carg09049	Cucsa.081330	Cucumber (Gy14) v1	carcgyB0664
Carg09049	CmaCh11G003660	Cucurbita maxima (Rimu)	carcmaB0830
Carg09049	CmaCh10G003770	Cucurbita maxima (Rimu)	carcmaB0828
Carg09049	CmoCh11G003670	Cucurbita moschata (Rifu)	carcmoB0808
Carg09049	CmoCh10G004070	Cucurbita moschata (Rifu)	carcmoB0806
Carg09049	Lsi06G012010	Bottle gourd (USVL1VR-Ls)	carlsiB540
Carg09049	Cp4.1LG04g13150	Cucurbita pepo (Zucchini)	carcpeB0847
Carg09049	Cp4.1LG18g06340	Cucurbita pepo (Zucchini)	carcpeB0843
Carg09049	CsGy1G020360	Cucumber (Gy14) v2	carcgybB0591
Carg09049	MELO3C017430.2	Melon (DHL92) v3.6.1	carmedB0606
Carg09049	CsaV3_1G031860	Cucumber (Chinese Long) v3	carcucB0626
Carg09049	Cla97C06G123060	Watermelon (97103) v2	carwmbB0623
Carg09049	Bhi02G000541	Wax gourd	carwgoB0711

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09049	Carg15224	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09049	Cucumber (Gy14) v2	carcgybB0597
Carg09049	Cucumber (Gy14) v1	carcgyB0666
Carg09049	Cucurbita maxima (Rimu)	carcmaB0831
Carg09049	Cucurbita maxima (Rimu)	carcmaB0837
Carg09049	Cucurbita moschata (Rifu)	carcmoB0809
Carg09049	Cucurbita moschata (Rifu)	carcmoB0815
Carg09049	Cucurbita pepo (Zucchini)	carcpeB0842
Carg09049	Cucurbita pepo (Zucchini)	carcpeB0848
Carg09049	Wild cucumber (PI 183967)	carcpiB0631
Carg09049	Cucumber (Chinese Long) v2	carcuB0619
Carg09049	Cucumber (Chinese Long) v2	carcuB0625
Carg09049	Cucumber (Chinese Long) v3	carcucB0632
Carg09049	Bottle gourd (USVL1VR-Ls)	carlsiB537
Carg09049	Watermelon (Charleston Gray)	carwcgB0578
Carg09049	Watermelon (97103) v1	carwmB0593
Carg09049	Watermelon (97103) v2	carwmbB0619
Carg09049	Watermelon (97103) v2	carwmbB0620