CmaCh09G002380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G002380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionWD repeat-containing 18
LocationCma_Chr09 : 1015223 .. 1022006 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTGCAGCGTCATGTTTTATCAACCGCGGTGTATGTTCGCTGTCACAAATTTTCGAGGGAAATTGAAACTGAAACCTTCTCTCAAGCTCCCGAGTCAGAATGGTGCTATTGGCCGCCTCGTCCTCCATTGATTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCTGTTGAAATATCATCACTAGCCCAATAGAGTCAAGCCCAATAATTGTACTAGCCCAATAGAGTCAAGCCTAATTGTACGAGCCCAGTATATTTATTTTAGTAGAGATTTTAGGAGAAAGAGATGTAGATATTTTAGGAGAAAGATTCAATTTGTTAGGTCTAGATTCAAATCGGTTAGGTCTAGATTTAGATTGGTTAAATATAGATTGTTTACTCTTAGTATAAATACCCCCACCCTACCTAGGTTATTCATCCAAGAAATCTAAAAACAATAAAAAGCAGAAGTATTCTACAGAGTGTCTTGTATTCTCTTCTCGATTGGTCTTAATAAAGAGAGCGAGTGTTTCCCACAGTGAGTTGTGTTCAACATTTGGTATCAGAGCGAGGTTAGTGTAGGTTATCTGATCTCTTGGAATCCTTAGTATGCTCTGTGGTTGCAGCTCTGCCTGATCTTCCACATCAGAAACGATTTCTTGAGATTAGTGGTGAGTGAGTTTCTTTTGTGTCGTGAGAAGTCTGTGACTCTGCAAGTCTTGTGTCAAAAGAACTTGTTTGGTATTACTGAGGTATGGCCAACACGATGAGTGATTTCCAAATCGTTGGAGGAATTAAGAAACTCAACAACAACAACTACAACACGTGGGCAACATGCATGATGTCCTATTTACAAGGACAGGATCTTTGGGAGATCGTTGGCGGGTGTGAAACTACGCCGCCAGAGGAGGATTCTAACGACGCCTTGCGCAAATGGAGAATCAAAGCAGGCAAAGCAATGTTTGCCTTGAAGACCACCATCGGAGAAGAGATGTTAGAACATATTTGGGATGACAAGACACCGAAAGAAGCATGGGACACATTCGTGATGTTGTTCTCAAAGAAGAATGATACGAGACTACAACTTCTGGAGAATGAGTTGTTGTCAATTTCACAACGTGATATGACGATTGCTCAGTACTTCCACAAGGTCAAATCGATCTGTCGGGAGATTACTGAACTAGACCCAAAGTCCGCCATTGTAGAATCTCGAATGAAGAGGATTATAATCCACGGATTGCGACCAGAATATCGAAGCTTCATTGCTGCTGTACAAGGATGGCCCACTCAACCATCACTGGTAGAGTTCGAAAATTTGTTAGCCAGCCAAGAAGCCATGGCTAAACAAATGGGAGGCTTCACGTTGAAGGGTGAAGAAGCACTCTACACGAGTGAAAGTCAGAGCAATAATAGGCCGTCTACCAGACGTGGATACAATGGTGACAAAAGAAGAAGCCACCAAGGGATTGCACAACCTGAGAGAGCTCAGAAGAACGACAACAAGAGTTTTCAAAGAACGAGATTTGGTGGTATTTGCTATAACTGCGGGAAAAAGGGCCATATGTCTAGAGATTGTTGGTCCAGGAAAAAGACCATTGAAAACAATGTGGCAATATCCAAAAAGAAGATAGAAGATGAATGGGATGCAGAGGTACTATGTCCCATAGAAGAAGACGAGCTAGCACTCATGGCGACAATGGAAGACCATATCAACTATGAGAATGACTGGATCGTTGATTCAGGATGTTCAAATCACATGACTGGCGATCAGAGAAAATTGCAAGACAAGAAAGAGTACAAAGGAAGTCGTATGGTACGTACAGCAAATAACACACAGTTATCAATTGCTCAAATCGGCAATACGACAATCATGCCTGGCAATAAGTCTGATACAGTGTCGCTACATAATGTTTATCATGTACCGGGTATAAAGAAGAACTTGTTGTCAGTGTCACAACTAACAACATCAGGAAGCTATGTCTTGTTTGGGCCAGAAGATGTAAAAGTTTATCAAGATGTTAAGATAATAGGAAAGCCGACGATAGAAGGACGAAGAGTGGAGTCTGTCTACGTTCTATCTGCAGAGTCTGCCTATGTTGACAAGACCCGAAAGAATGAGACGACAGATCTATGGCATGCAAGATTGGGACATATTAGCTACCATAAGTTGAAGCTGATTATGGAGAAATCTATGCTCAAAGGTCTACCACAACTGGAAGTCAAAACAGACGTTGTCTGCGCTGGATGTCAGTATGGTAAAGCTCATCAATTACCATACAAAGAGTCAAGTTTCAAAGCAAAGAAACCATTAGAGTTAGTTCACTCTGATTTGTTCGGCCCAGTCAAACAAGCATCGATCAGCGGAATGCGGTATATGGTGACATTTATTGACGACTACTCAAGATATGTGTGGATTTTCTTTATGAAAGAAAAGTCTGACACGTTCTCAAAGTTTCAAGAATTCAAGATGATGGTCGAAGGAGAAGTAGGAGCGAAGATTCGTTGTCTACGTTCAGACAATGGCGGAGAATACACGTCAGATGAGTTCGATCAATATTTACACGAGTGTGGGATACGACGTCAATTTACATGTGCCAACACGCCACAACAAAATGGTGTAGCAGAAAGAAAGAATCGACACCTTGCAGAAACCTGTCGAAGCATGTTACACGCAAAGAACGTTCCAGGAAGATTTTGGGCTGAAGCTATGCGAACTGCTGCCCATGTGATCAACAAGCTTCCTCAACCAAAGCTAGGGTTCGTCTCACCATTTGAGATACTATGGGATATGAAACCTACAATTAGTTACTTCCGAGTATTTGGCTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGTGTATTTGTTGGATACGACAATCAAAGAAAAGGATGGAGGTGCTGTGATCCAACAAGTGGAAAATACTATACATCAAGAGATGTAGTTTTTGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAAGTCTTATCAGATTCAAACATTGAAGAAATTCTACAACAGAAGCTGGGGGAGCAAACTACACAAATTCAATCAAATTTCGATGCATCTGAAAGTCCAAGCGACATTGATATTGACAAGCAGGAGGTGACTCAATCAAGCGAATCTGATAAAAATGAAACAACACATCAACAACTTAGGCGATCAAATAGAATCCGAAGGCCAAATCCTAAGTATGCAAATGCAGCTATTGTAGAAGATAGAGTTTACGAACCAGAGACATATGAAGAAGCATCACAAAACTCGGTTTGGCAGAAAGCGATGGAGGAAGAAATTATAGCCTTGGAGCATAATCAAACTTGGGAACTAGTGCCAAGACTAGGAGATATCAAACCCGTCTCTTGCAAGTGGGTCTATAAAATAAAGCGTCGACCGGATGGATCAATCGAGAGATACAAGGCTCGACTCGTGGCTCGAGGATTTTCTCAACAATATGGACTAGATTATGATGAAACATTCAGTCCAGTGGCAAAGATTACTACCGTACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTGGAAACTGTGGCAAATGGATGTGAAGAATGCCTTCTTGCACGGAGAGCTAGACAGGGAGATTTATATGAACCAACCAAAGGGATTTGAGAGTGCAGCTAATCCTAATTATGTATGCAAGCTTAGAAAAGCTCTTTATGGACTGAAACAAGCACCGAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCGCATGCAGACTCAAGCCTATTCATCAAAGAAAGAGAAGGAAATTTGACAATTGTGTTGGTCTACGTGGACGATTTGATTATCACCGGGGACGATGAAAGAGAAATTTATCAAACAAGAGAAAATTTATCAATACGCTTTCAGATGAAAGAGCTAGGAGAGCTTAAACACTTCTTAGGCCTAGAAGTTGATCGCACAGATGAAGGACTGTTTCTCTGCCAACAAAAGTATACCAGAGACATGCTTCAGAAGTTCAACATGTTAGAGTGCAAGCAAGTTTCAACACCGATGGAGATAAATGCCAAGATTTGTGCACATGAAGGCAAAGAGTTGAACGATGAAACAACGTACCGACAACTAGTAGGTAGTCTTATCTACCTAACTTTAACTCGACCTGATATCTCGTATGCAGTTGGGGTTATGAGTCGATACATGCAAAGTCCAAAGAAGCCTCATCTGGATGCAGCTCGACGGATCTTGAGATATATCAAAGGTACAATCGACTATGGTCTTTTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGACTATGCAGGAGACCACGATACTCGGAGGTCAACCACTGGGTATGTGTTCAAGTTTGGTTCGGGAACAATTTCTTGGTGTAGCAAGAGACAACCAACAGTATCATTATCAACTACAGAAGCAGAGTATAGAGCAGCGGCTGGAGCAGCCCAGGAAAGTACATGGCTAAAACTCTTGATGGAAGATTTGCACCAGAAAATTGACTATCCAATATCACTTCTTTGCGACAACCAATCTGCGATTCGCCTTGCAGAAAATCCAGTGTTTCATGCTAGAACAAAGCATGTGGAGGTGCACTACCATTTCATTAGAGAGAAGGTCCTAAAGGAAGAAATTGAGATGCAGCAGATCAAGACAGATGACCAAGTGGCAGACTTGTTTACAAAAGGGTTGAATACTAGCAAACATGAGAGCTTTCGCTGTCAGCTCAACATGATGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGAAATATCATCACTAGCCCAATAGAGTCAAGCCCAATAATTGTACTAGCCCAATAGAGTCAAGCCTAATTGTACGAGCCCAGTATATTTATTTTAGTAGAGATTTTAGGAGAAAGAGATGTAGATATTTTAGGAGAAAGATTCAATTTGTTAGGTCTAGATTCAAATCGGTTAGGTCTAGATTTAGATTGGTTAAATATAGATTGTTTACTCTTAGTATAAATACCCCCACCCTACCTAGGTTATTCATCCAAGAAATCTAAAAACAATAAAAAGCAGAAGTATTCTACAGAGTGTCTTGTATTCTCTTCTCGATTGGTCTTAATAAAGAGAGCGAGTGTTTCCCACAGTGAGTTGTGTTCAACAGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTGCTGTAAGGTACTAGTTATTGGAAATGTAACGGAGTCTATAAAAACGGAACTTGACTTTTTCTATTGCCAAAAGGATTTTCAGTAACAAAAGCTAAAATGAAGGAGACAAATGGGAACATGTGTTCCTGAATAGCGTGCTTAGTTAATTTTTCTCTGTGCAGCCCGAAAGTCGTTTATTGTCACTGGTTGAAATTCTTCTTACAAATATGCTTGTTATTCCAGGGTATTTGATGATGGATGGCGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTTTGGCACTCTAATGAATACAATTTCTATGTTGATAATATAATCTTGTGATAATGTGGCCATGCAGTTTGGTGAGGTAACTAGTTTTACAACCTTTGGCTTTAAATTTATTTCTGTTTGCTAGTTAAGTATTTGAACTTATCTGCCTAATTGCATTAACTTGGTGAATCGCCTTTTCTTGCGATTACTGCAGCTTGGCGTTTTAGGCTTGTGTACATTCCCTTCTAGGAATTTAGTGTTTTTAATAGTGATGTGGATGTATCATATATTAAACATGTAGTGACATAATTATCCAAATATGCACACGTAAGTTTTTTTTTTAAAAAAAATAGAAACAAAAAGTACATAAGTTTTCCGCATAATCATCCAAATATGCATAAGCCCACTGCTAGCAGATATTGTCCGCTTCGACCTGTTACGTATCGTCGTCAGCCTCACAGTTTTAAAACGCGTATACTAAAGAGAGGTTTCCACACCTTATAAAGAACGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACTCCCTTGGGGGCCTAGTTCCTCGCTGGCACACCACCTGATAACTGACTCTAATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTCCGTGCTTTCCCTCAAGATTTTAAAACGCATTTACTAGGGAGAGGTTTCCTCCTCCTCTCTATCCAATGTGGGATCTTACAATCCACCCCTTGAGCGGTTACATCTTGTCTTTTAATTAGTGTAAATTGAGTCCTCCTTTTTGTAATTACAGCTTAACTAATCTCATGACTGATTGGGCTTCCCTTTCTTTGTAATTTCATCATATCAACGTAATGTCTTTCTTTCTATAAATAAATGGTGCAATATTTTTTTTGTTGAATTGTTACTTATCACCAATGAGTAATGAGTATTTTCCTATCCTAACTTCTATCGTATCAAATTGTCTTCCGGTGTTTCATATGCTATATGTTAACTGGGCTCTTGTAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAAGTGTCTTCTATGGTGGTGTAG

mRNA sequence

ATGTCGCTGCAGCGTCATGTTTTATCAACCGCGGTGTATGTTCGCTGTCACAAATTTTCGAGGGAAATTGAAACTGAAACCTTCTCTCAAGCTCCCGAGTCAGAATGGTGCTATTGGCCGCCTCGTCCTCCATTGATTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGGTATTTGATGATGGATGGCGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAAGTGTCTTCTATGGTGGTGTAG

Coding sequence (CDS)

ATGTCGCTGCAGCGTCATGTTTTATCAACCGCGGTGTATGTTCGCTGTCACAAATTTTCGAGGGAAATTGAAACTGAAACCTTCTCTCAAGCTCCCGAGTCAGAATGGTGCTATTGGCCGCCTCGTCCTCCATTGATTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGGTATTTGATGATGGATGGCGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTGATATTGTTGTTGGCTATGGAGGATCCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAAGTGTCTTCTATGGTGGTGTAG

Protein sequence

MSLQRHVLSTAVYVRCHKFSREIETETFSQAPESEWCYWPPRPPLIGDWLLGPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGEVSSMVV
Homology
[Close]
BLAST of CmaCh09G002380 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-14
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 64  VLVFDDGWRRE---------EKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDRTCK 123
           + +FDD  R++          +H M++T + I Y            NA+IISSS DRTCK
Sbjct: 150 IRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDY---------GGCNAVIISSSEDRTCK 209

Query: 124 VWSLSNGKLLRNIIFPSIIDAIALDPG 142
           VWSLS GKLL+NIIFPS+I+A+ALDPG
Sbjct: 210 VWSLSRGKLLKNIIFPSVINALALDPG 227

[Close]
BLAST of CmaCh09G002380 vs. TrEMBL
Match: A0A0A0KZT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 55/91 (60.44%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC      + VFDDGW+RE KH    +  G    +  +++     NAIIISSSVDR
Sbjct: 138 GSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS GKLLRNIIFPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSKGKLLRNIIFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. TrEMBL
Match: A0A166BZ57_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011828 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC      +++FDD  R E KH    +       +  ++      NAII+S+S DR
Sbjct: 139 GAEDGCVRVWSLLMIFDDFRRNEAKHLFEYSFSEHTLRVTDIVTGHGGCNAIIVSASEDR 198

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSL+ GKLLRNI+FPSIIDAIALDPGE
Sbjct: 199 TCKVWSLAKGKLLRNIVFPSIIDAIALDPGE 229

[Close]
BLAST of CmaCh09G002380 vs. TrEMBL
Match: A0A061FBK5_THECC (WD-repeat protein, putative isoform 1 OS=Theobroma cacao GN=TCM_033817 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-15
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC       L+FDD  R++  H    +       +  +++     +AII+S+S DR
Sbjct: 138 GSDDGCVRVWSLFLIFDDVRRQQASHLYEYSFTEHTLCVTDIIMGYGGGSAIIVSASEDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS G+LLRNI+FPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSRGRLLRNIVFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. TrEMBL
Match: A0A061FBZ2_THECC (WD-repeat protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_033817 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-15
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC       L+FDD  R++  H    +       +  +++     +AII+S+S DR
Sbjct: 138 GSDDGCVRVWSLFLIFDDVRRQQASHLYEYSFTEHTLCVTDIIMGYGGGSAIIVSASEDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS G+LLRNI+FPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSRGRLLRNIVFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. TrEMBL
Match: A0A0B0PI43_GOSAR (WD repeat-containing 18 OS=Gossypium arboreum GN=F383_07747 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC       ++FDD  R++  H    +       +  +++     NAII+S+S DR
Sbjct: 138 GSEDGCVRVWSLFMIFDDVRRQQVSHLYEYSFTEHTLRVTDIVIGYGGGNAIIVSASEDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS G+LLRN++FPSIIDAIA+DPGE
Sbjct: 198 TCKVWSLSKGRLLRNVVFPSIIDAIAIDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-15
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1 

Query: 64  VLVFDDGWRRE---------EKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDRTCK 123
           + +FDD  R++          +H M++T + I Y            NA+IISSS DRTCK
Sbjct: 150 IRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDY---------GGCNAVIISSSEDRTCK 209

Query: 124 VWSLSNGKLLRNIIFPSIIDAIALDPG 142
           VWSLS GKLL+NIIFPS+I+A+ALDPG
Sbjct: 210 VWSLSRGKLLKNIIFPSVINALALDPG 227

[Close]
BLAST of CmaCh09G002380 vs. NCBI nr
Match: gi|778696168|ref|XP_011654116.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 55/91 (60.44%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC      + VFDDGW+RE KH    +  G    +  +++     NAIIISSSVDR
Sbjct: 138 GSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS GKLLRNIIFPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSKGKLLRNIIFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. NCBI nr
Match: gi|659103300|ref|XP_008452567.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 55/91 (60.44%), Postives = 62/91 (68.13%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC      + VFDDGW+RE KH    +  G    +  +++     NAIIISSSVDR
Sbjct: 138 GSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS GKLLRNIIFPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSKGKLLRNIIFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. NCBI nr
Match: gi|1021045291|gb|KZN03072.1| (hypothetical protein DCAR_011828 [Daucus carota subsp. sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC      +++FDD  R E KH    +       +  ++      NAII+S+S DR
Sbjct: 139 GAEDGCVRVWSLLMIFDDFRRNEAKHLFEYSFSEHTLRVTDIVTGHGGCNAIIVSASEDR 198

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSL+ GKLLRNI+FPSIIDAIALDPGE
Sbjct: 199 TCKVWSLAKGKLLRNIVFPSIIDAIALDPGE 229

[Close]
BLAST of CmaCh09G002380 vs. NCBI nr
Match: gi|590592160|ref|XP_007017201.1| (WD-repeat protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC       L+FDD  R++  H    +       +  +++     +AII+S+S DR
Sbjct: 138 GSDDGCVRVWSLFLIFDDVRRQQASHLYEYSFTEHTLCVTDIIMGYGGGSAIIVSASEDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS G+LLRNI+FPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSRGRLLRNIVFPSIIDAIALDPGE 228

[Close]
BLAST of CmaCh09G002380 vs. NCBI nr
Match: gi|590592166|ref|XP_007017203.1| (WD-repeat protein, putative isoform 3, partial [Theobroma cacao])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 52  GPSHGCGATTLQVLVFDDGWRREEKHFMNITSLGIIYLLLILLLAMEDPNAIIISSSVDR 111
           G   GC       L+FDD  R++  H    +       +  +++     +AII+S+S DR
Sbjct: 138 GSDDGCVRVWSLFLIFDDVRRQQASHLYEYSFTEHTLCVTDIIMGYGGGSAIIVSASEDR 197

Query: 112 TCKVWSLSNGKLLRNIIFPSIIDAIALDPGE 143
           TCKVWSLS G+LLRNI+FPSIIDAIALDPGE
Sbjct: 198 TCKVWSLSRGRLLRNIVFPSIIDAIALDPGE 228

The following BLAST results are available for this feature:
BLAST of CmaCh09G002380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RID3_ARATH6.5e-1449.43Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1[more]
BLAST of CmaCh09G002380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZT0_CUCSA3.2e-2060.44Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639920 PE=4 SV=1[more]
A0A166BZ57_DAUCA2.4e-1550.55Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011828 PE=4 SV=1[more]
A0A061FBK5_THECC9.2e-1548.35WD-repeat protein, putative isoform 1 OS=Theobroma cacao GN=TCM_033817 PE=4 SV=1[more]
A0A061FBZ2_THECC9.2e-1548.35WD-repeat protein, putative isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_03381... [more]
A0A0B0PI43_GOSAR2.0e-1446.15WD repeat-containing 18 OS=Gossypium arboreum GN=F383_07747 PE=4 SV=1[more]
BLAST of CmaCh09G002380 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49180.13.7e-1549.43 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of CmaCh09G002380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778696168|ref|XP_011654116.1|4.7e-2060.44PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus][more]
gi|659103300|ref|XP_008452567.1|4.7e-2060.44PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo][more]
gi|1021045291|gb|KZN03072.1|3.5e-1550.55hypothetical protein DCAR_011828 [Daucus carota subsp. sativus][more]
gi|590592160|ref|XP_007017201.1|1.3e-1448.35WD-repeat protein, putative isoform 1 [Theobroma cacao][more]
gi|590592166|ref|XP_007017203.1|1.3e-1448.35WD-repeat protein, putative isoform 3, partial [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:1902184 negative regulation of shoot apical meristem development
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G002380.1CmaCh09G002380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 96..140
score: 1.
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 95..138
score: 2.8
NoneNo IPR availablePANTHERPTHR18763WD-REPEAT PROTEIN 18coord: 93..142
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G002380Cucsa.352310Cucumber (Gy14) v1cgycmaB0960
CmaCh09G002380Cla020659Watermelon (97103) v1cmawmB026
CmaCh09G002380Csa4G639920Cucumber (Chinese Long) v2cmacuB020
CmaCh09G002380MELO3C016764Melon (DHL92) v3.5.1cmameB040
CmaCh09G002380ClCG05G019990Watermelon (Charleston Gray)cmawcgB021
CmaCh09G002380CSPI04G24210Wild cucumber (PI 183967)cmacpiB020
CmaCh09G002380CmoCh09G002300Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G002380Carg26317Silver-seed gourdcarcmaB1097
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G002380Cucumber (Gy14) v2cgybcmaB147
CmaCh09G002380Cucumber (Gy14) v2cgybcmaB465
CmaCh09G002380Cucumber (Gy14) v2cgybcmaB699
CmaCh09G002380Melon (DHL92) v3.6.1cmamedB024
CmaCh09G002380Melon (DHL92) v3.6.1cmamedB038
CmaCh09G002380Melon (DHL92) v3.6.1cmamedB039
CmaCh09G002380Melon (DHL92) v3.6.1cmamedB045
CmaCh09G002380Silver-seed gourdcarcmaB0247
CmaCh09G002380Silver-seed gourdcarcmaB1065
CmaCh09G002380Cucumber (Chinese Long) v3cmacucB0015
CmaCh09G002380Cucumber (Chinese Long) v3cmacucB0027
CmaCh09G002380Cucumber (Chinese Long) v3cmacucB0035
CmaCh09G002380Cucumber (Chinese Long) v3cmacucB0039
CmaCh09G002380Watermelon (97103) v2cmawmbB013
CmaCh09G002380Watermelon (97103) v2cmawmbB026
CmaCh09G002380Watermelon (97103) v2cmawmbB035
CmaCh09G002380Wax gourdcmawgoB0014
CmaCh09G002380Wax gourdcmawgoB0035
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB033
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB042
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB051
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB063
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB067
CmaCh09G002380Cucurbita maxima (Rimu)cmacmaB071
CmaCh09G002380Cucumber (Gy14) v1cgycmaB0219
CmaCh09G002380Cucumber (Gy14) v1cgycmaB0961
CmaCh09G002380Cucumber (Gy14) v1cgycmaB1086
CmaCh09G002380Cucurbita moschata (Rifu)cmacmoB038
CmaCh09G002380Cucurbita moschata (Rifu)cmacmoB047
CmaCh09G002380Cucurbita moschata (Rifu)cmacmoB058
CmaCh09G002380Cucurbita moschata (Rifu)cmacmoB062
CmaCh09G002380Cucurbita moschata (Rifu)cmacmoB065
CmaCh09G002380Wild cucumber (PI 183967)cmacpiB011
CmaCh09G002380Wild cucumber (PI 183967)cmacpiB028
CmaCh09G002380Wild cucumber (PI 183967)cmacpiB032
CmaCh09G002380Cucumber (Chinese Long) v2cmacuB011
CmaCh09G002380Cucumber (Chinese Long) v2cmacuB028
CmaCh09G002380Cucumber (Chinese Long) v2cmacuB033
CmaCh09G002380Melon (DHL92) v3.5.1cmameB023
CmaCh09G002380Melon (DHL92) v3.5.1cmameB039
CmaCh09G002380Melon (DHL92) v3.5.1cmameB047
CmaCh09G002380Watermelon (Charleston Gray)cmawcgB029
CmaCh09G002380Watermelon (97103) v1cmawmB014
CmaCh09G002380Watermelon (97103) v1cmawmB033
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB027
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB030
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB035
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB042
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB045
CmaCh09G002380Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G002380Bottle gourd (USVL1VR-Ls)cmalsiB015
CmaCh09G002380Bottle gourd (USVL1VR-Ls)cmalsiB024
CmaCh09G002380Bottle gourd (USVL1VR-Ls)cmalsiB032