Carg26317 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26317
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	WD repeat-containing 18
Location	Cucurbita_argyrosperma_scaffold_399 : 92760 .. 97045 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTGCAGCGTCATGTTTCATCAACCGCGGTGTTTGTTCGCTGCCACAAATTTTCGAGGGAAATTGAAACTGAAACTTTCTCTCAAGCTCTCGAGTCAGAATGGTGCTACTGGTCGCGTCGTCCTCCATTGATTTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTAGTGTAAGGTACTATTTATTGGAAATGTAGCGGAGTCTATCATGTGTTCCTGAATAGTGTGCTTAGTTAATTTTTCTCTGTGCAGCCGGAAAGTCGTTTATTGTCACTGGTAGAAATTCTTCTTACAAACATGCTTGTTATTCCAGGGTATTTGATGATGGATGACGAAGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTTTGGCACTCTAATGTATATAATTTCTATGTTGATAATATAATCTTGTGATAATGTGGCCATGCGGTTTGGTGAGGTAATTAGTTTTACAATCTTTGGCTTTAAATTTATTTCTGTTTGCTAGTTAAGTATTTGAACTTATCTGCCTAATTGTATTAACTTGGTGAATCGCCTTTTCTTGCGATTACTGCAGCTTGGCGTTTTAGGCTTGTGTACATTCCCTTCCAGGAATTTAGTGTTTTTAATAGTGATGTGGATGTATCATAAATTAAACATGTAGTGACATAATTATCCAAATATGCACACATAAGTTTTTTTTTTTTTTAAATAGAAACAAAAAACACACAAGTTTTCCACATAATTATTCATTTATGCACAAGCCCACTGCTAGCAGATATTGTCCGCTTCGGCCTGTTACGTATCGCCGTCAGCCTCACGGTTTTAAAACGCGTATACTAAGGAGAGGTTTCCACACCTTATAAAGAACACTTCGTTTTCCTCTCCAACCAATGTGAGATCTCACAATCCACCCCCCTTGGGGGCCTAGCGTCCTCGCTGGCACACCACCCGGTAATTGGCTCTAATACTATTTGTAACAGCCCAAGTCCACTGCTAGCAGATATTGTCTTCTTTGGACTTTCCCTTTCGAGTTTCCCCTCAAGGTTTTAAAACGCGTTTACTAGGGAGAGGTTTCCTCCTCCTCTCTATCCAATGTGGGATCTTACAATCCCCCTTGAGCTGTTACATCTTGTCTCTTAATTGGTGTAAATCAGAGTCCTCCTTTTTGTAATTACAGCTTAACTAATCTCATGACTGATTGGGCTTCCCCTTCTTTGTAATTTCATCATATCAACGTAATGTTTTTCTTTCTATAAATAAATGGTGCAATATTCTTTTGGTTGAATTGTTACTTATCACCAATGAGTAACGAGTATTTTCCTATCCTAACTTCTATCGTATCAAATTGTCTTCCGGTGTTTCATATGCTATATGTTAACTTGGCTCTTGTAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTGTCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAAGGTCTGTATTTTTATCAAGTTTTCCTCTAAATTGTTTTGTCCATTCTGGTTCCTAGATTGTTCTCTTTGTTCCATGCACTCTGTAGTTGCTTGACTAATGATATAATTATGCAATAAAATGTTGAGGAATTTCAAGTTGCCATTAGTTCGGTGCACATTTTTACTTGTACTTACGGTATTTTTAATGGTGTCTTGACCGCTTAAGAACTAGGCATTAGCTTCCAAGTTGATAATATTTGTGTCTAGCATTGCTAAAAAGCCACTTTATGTTTTCTTTCAATGTGTTTTATGTTGAAGAGTGTTGGGAGGGAGTCCCACGTTGACTAATTTAGGGAATGATCTTGAGTTTATAAGTAAGGAATACATCTCAATTGGTACGAGGCCTTTTGGGGAAATCAATAACAAAGTCATGAGAGCTTATGCTTAAAGTGGATAATATTATACCATTGTGGAGAGTTGTGATTTCTAACATTTTATTTCTATATAGGTTTTTTATGCATGATATGGTTTCAATGTGTTTATGTATTTGCTATATTGCTATAATTCTCTCCATATTAGTTGCCCTAGCTAATGCTGTTAGCTTTTGGTTACTGAATTAGTGACCAGCTTTTTTATTATTTTATCTGTATATTGCTATAATTTTTACACAACCCCCTAAATTTTGTTTTGATCCATTTGGTGTTCTAGAAATTGAATAATCGAGTCGAAGAGTCTTCGGTGGAATTGTTAGAAAGACATCCACGATTAATGTAAGTTCTAGAACCCTTTTTCCTGGAATAAGATGCGTACATGGTGTTACTTCTGGAAGTACCTTAAGCTTGTAAGAATATTTTTGATCATGTGGGTGTTTGATTCCGGTTGCATGAGGTAGACATGTTGTGTTTTTTTGGGGCGGGCTTTTTACATGAATGAACTGCCAAAAATAATTTCCCACTAGGGAAAAAATTGTTGAAGAGTGAGGTGTTGTATTGAAAGTGGTTGATAGCCGAAACAAAACAAGTGGAAGAAGAGATGCCCTTTGATGGAATGATTCGTGCAAAATAACCCCAACCCGTCCAAAGTTGAATGCGATGATGATTATAATGTAAATAAAAGAGAGTTGAAGTTGAGATCTCAGGGGGACCATCTCCACTCTTTGTCTCTTAGTTATAATTTTGTGGGTCTGTTCTGTTCTGTTCAGTTCTATTATTTTAACATATCATATCTTATTAACAAGAACTATTAATGTGCTGAGTGGGGAAGAAAAGATAAGGTGGTGTAAGCAGCGGAAAGAAACTCAGTAACAAAGGTTCGGTTTCTCTTTCTCTCTCTCTACCATTGGATTCTTTTTTTATCTAAAAGAACATCTTCTGCTGCGGAACATATCTCTTTATTCACATTTTATGTATGTGCTCCACACACCTTTACAAATGATATTATAATTTATTGTCCTCCTCTGTTTGTGACATACAGAGTGATTGATTTCCTTGATCTGGGCACCAAATCAAAATGTTGGTGCCAGAGAATTCTGTAGCTTTTGAGTGAGTTAATGTTAAATGATTGTGCCAGATTAAAAGACAGGAGGATACTTATGTACCATCTCCTACAGAGTAATTCTTGGCGGCTGCAACACTAGCGCCCTTTTCTTACTTGTTTCAAAATTTAAACTTGGCGATAATAATGCATGTTTTTTCCTATCAATTAACTGACCCCAAGCTTCCATTCTTTCCCTTGTCTGCTGAAAATGGCCTCCTCCATATTTGCTGCTTCTGGTACGTGTTGGCCTTTTCCATCTTAAGTATTAGGAAAACCAACAACTCTTCCCACCACTTGGCTCGCCATTCCTTCTCAAATTTTGATCTGTTTCAGGTTTATTTTAAAGAGTTCGTTCGGATTGTTAGGAACCATGATCACTTTATAATGGTATGGTATCGTCAACTTTGAACATAAGATCTCGTGACATTGCTTTTGGTTTTTCCAAAAGGCCTCATACTAATGAAGATGTATTCCTTACTTATAAACCTATGATCACTTTCTTAATTAGCCAATGTGAAACTCTCAACAATCATTTCCTCAAATAAAGTGCACCTTAGAGCCTCCTCTGAGGTCTATAGAGTCCTCAGATAGTCTCTTTTTAATCGAAAATCGCCTCCTTCTCTAGAGCTCTAGAATAAAGTATATCATTTGTTTGACACTTAATCCTTTCGAGACTCACAATTTCTTTTTTTGACATTTCAGGATTTTATAGACATGGCTAAGTTAAGGGCATAGCTTTATGTTAGAAACCACGACTCTTCATACTGGTATGATATTGTCCATTTTGAACATAAATTTTATGACTTTTCTTTAGTTTCTTCCAAAACTAAGACTATTTCTTATTTATAAACTCAGGATTAAGAGAACTCTCTCCCGAAAACAATATCATACTAGAGAGAGAGTACTTCCACCTCCACATTAGGCAGGTAGGCTTCAGAACCTGATCCTGATCTGCCTCGAACAGTGTGA

mRNA sequence

ATGTCGCTGCAGCGTCATGTTTCATCAACCGCGGTGTTTGTTCGCTGCCACAAATTTTCGAGGGAAATTGAAACTGAAACTTTCTCTCAAGCTCTCGAGTCAGAATGGTGCTACTGGTCGCGTCGTCCTCCATTGATTTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTAGTGTAAGCGGAGTCTATCATGTGTTCCTGAATAGTGTGCTTACCGGAAAGTCGTTTATTGTCACTGGTAGAAATTCTTCTTACAAACATGCTTGTTATTCCAGGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTGTCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAAGAACCTGATCCTGATCTGCCTCGAACAGTGTGA

Coding sequence (CDS)

ATGTCGCTGCAGCGTCATGTTTCATCAACCGCGGTGTTTGTTCGCTGCCACAAATTTTCGAGGGAAATTGAAACTGAAACTTTCTCTCAAGCTCTCGAGTCAGAATGGTGCTACTGGTCGCGTCGTCCTCCATTGATTTGGGGATTGGTTGCTGGGACCTTCACACGGGTGCGGAGCAACTACGTTACAAGTCTTGTGCTTCTCCTGCACATGGTCTTGTTTGTGTTGGTGAAAGGTTTCTCGCATGCTCTCTGCTCCGCGATCCTGCTTCCACCGCTGGCTCCGTTCTCTACTGGTCTTAGTGTAAGCGGAGTCTATCATGTGTTCCTGAATAGTGTGCTTACCGGAAAGTCGTTTATTGTCACTGGTAGAAATTCTTCTTACAAACATGCTTGTTATTCCAGGGGAAGAGAAACATTTTATGAACATAACTTCACTGGGCATAATCTACCTGTTACTAATATTGTTGTTGACTATGGAGGATCCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCTAATGGGAAATTATTAAGAAATATCATATTTCCTTCAATCATTGATGCAATTGCTTTGGATCCTGGTGAACGTGTCTTCTATGGTGGTGTAGAGATGAGAAGTTCTACACTGCTGCACTTAATGCTAAATGCCCATCCGGCAGTGCCTACGGATTGCATATTCTCGGCTCATTGTCTAATCAAAGAACCTGATCCTGATCTGCCTCGAACAGTGTGA

Protein sequence

MSLQRHVSSTAVFVRCHKFSREIETETFSQALESEWCYWSRRPPLIWGLVAGTFTRVRSNYVTSLVLLLHMVLFVLVKGFSHALCSAILLPPLAPFSTGLSVSGVYHVFLNSVLTGKSFIVTGRNSSYKHACYSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCLIKEPDPDLPRTV

Homology

[Close]

BLAST of Carg26317 vs. NCBI nr
Match: XP_023536629.1 (uncharacterized protein LOC111797743 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.6 bits (475), Expect = 5.3e-44
Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MSLQRHVSSTAVFVRCHKFSREIETETFSQALESEWCYWSRRPPLIWGLVAGTFTRVRSN 60
           MSLQRHVSSTAVFV+CHKFSREIETETFSQALESEWCYWSRRPPLI GLVAGTFTRVRSN
Sbjct: 1   MSLQRHVSSTAVFVQCHKFSREIETETFSQALESEWCYWSRRPPLIRGLVAGTFTRVRSN 60

Query: 61  YVTSLVLLLHMVLFVLVKGFSHALCSAILLPPLAPFSTGLSV 103
           YVTSLV+LL MVLFVLVKGFSHALCSAILLPPLAP STGL V
Sbjct: 61  YVTSLVILLLMVLFVLVKGFSHALCSAILLPPLAPCSTGLGV 102

[Close]

BLAST of Carg26317 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata])

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-29
Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIIDAIALDPGEHVFYGG--GRDGKIYTAALNAKS--PSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. NCBI nr
Match: XP_022982251.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima])

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-29
Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLPVT+IV+ YGGSNAIIISSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIIDAIALDPGEHVFYGG--GRDGKIYTAALNAKS--PSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. NCBI nr
Match: XP_023521513.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-29
Identity = 71/108 (65.74%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLPVT+IV+ YGGSNAII+SSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQRESKHLYEHSFTGHNLPVTDIVIGYGGSNAIIVSSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIIDAIALDPGEHVFYGG--GRDGKIYTAALNAKS--PSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. NCBI nr
Match: XP_022151059.1 (protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-28
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLP+T+IVV YGGSN+IIISSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQREAKHLYEHSFTGHNLPITDIVVGYGGSNSIIISSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SI+DAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIVDAIALDPGEHVFYGG--GRDGKIYTAALNAKS--PSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. TAIR10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-26
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 139 TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAI 198
           T YEHNF  H + VT+IV+DYGG NA+IISSS DRTCKVWSLS GKLL+NIIFPS+I+A+
Sbjct: 163 TLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINAL 222

Query: 199 ALDPGERVFYGG 211
           ALDPG  VFY G
Sbjct: 223 ALDPGGCVFYAG 234

[Close]

BLAST of Carg26317 vs. Swiss-Prot
Match: sp|Q9M3B4|RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-25
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 139 TFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAI 198
           T YEHNF  H + VT+IV+DYGG NA+IISSS DRTCKVWSLS GKLL+NIIFPS+I+A+
Sbjct: 163 TLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINAL 222

Query: 199 ALDPGERVFYGG 211
           ALDPG  VFY G
Sbjct: 223 ALDPGGCVFYAG 234

[Close]

BLAST of Carg26317 vs. Swiss-Prot
Match: sp|Q9BV38|WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 6.0e-07
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 143 HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDP 202
           H ++ H LP+T++   +GG  A + +SS+D+T K+W +S+G+LL +++F   I A+ +D 
Sbjct: 166 HVWSHHALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDL 225

Query: 203 GE-RVFYGGVE 213
            E  +F GG E
Sbjct: 226 AEHHMFCGGSE 236

[Close]

BLAST of Carg26317 vs. Swiss-Prot
Match: sp|Q4VBE8|WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus OX=10090 GN=Wdr18 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 24/69 (34.78%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 143 HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDP 202
           H ++ H LP+T++   +GG  A + ++S+D+T K+W++S+G LL +++F   I ++ +D 
Sbjct: 166 HVWSQHTLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDL 225

Query: 203 GE-RVFYGG 211
            E  +F GG
Sbjct: 226 AEHHIFCGG 234

[Close]

BLAST of Carg26317 vs. Swiss-Prot
Match: sp|Q499N3|WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 24/69 (34.78%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 143 HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDP 202
           H ++ H LP+T++   +GG  A + ++S+D+T K+W++S+G LL +++F   I ++ +D 
Sbjct: 166 HVWSQHTLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDL 225

Query: 203 GER-VFYGG 211
            E  +F GG
Sbjct: 226 AEHYIFCGG 234

[Close]

BLAST of Carg26317 vs. Swiss-Prot
Match: sp|Q3SZD4|WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-06
Identity = 23/68 (33.82%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 143 HNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIALDP 202
           H ++ H LP+T++   +GG  A + ++S+D+T K+W +S+G+LL +++F   I A+ +D 
Sbjct: 166 HVWSRHTLPITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDL 225

Query: 203 GERVFYGG 211
            E   + G
Sbjct: 226 AEHYMFCG 233

[Close]

BLAST of Carg26317 vs. TrEMBL
Match: tr|A0A1S3BU36|A0A1S3BU36_CUCME (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 72/108 (66.67%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLPVT+IVV YGG NAIIISSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIIDAIALDPGEHVFYGG--GRDGKIYTAALNA--KCPSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. TrEMBL
Match: tr|A0A0A0KZT0|A0A0A0KZT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 72/108 (66.67%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 133 YSRGRETFYEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFP 192
           + R  +  YEH+FTGHNLPVT+IVV YGG NAIIISSSVDRTCKVWSLS GKLLRNIIFP
Sbjct: 157 WQREAKHLYEHSFTGHNLPVTDIVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFP 216

Query: 193 SIIDAIALDPGERVFYGGVEMRSSTLLHLMLNAHPAVPTDCIFSAHCL 241
           SIIDAIALDPGE VFYGG   R   +    LNA    P+   +  H L
Sbjct: 217 SIIDAIALDPGEHVFYGG--GRDGKIYTAALNA--KCPSSSDYGLHIL 260

[Close]

BLAST of Carg26317 vs. TrEMBL
Match: tr|A0A2J6L9Y5|A0A2J6L9Y5_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X115620 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 141 YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIAL 200
           YE++FTGH LPVT+IV  YGGSNAII+SSS+DRTCK+WSL+ G LLRNI+FPSIIDA+AL
Sbjct: 167 YEYSFTGHALPVTDIVTGYGGSNAIILSSSLDRTCKIWSLARGTLLRNIVFPSIIDAVAL 226

Query: 201 DPGERVFYGG 211
           DPGE VFY G
Sbjct: 227 DPGEHVFYAG 236

[Close]

BLAST of Carg26317 vs. TrEMBL
Match: tr|A0A2P4LE71|A0A2P4LE71_QUESU (Protein root initiation defective 3 OS=Quercus suber OX=58331 GN=CFP56_32525 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.9e-24
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 141 YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIAL 200
           YEHNF+ H L VT+IVV YGGSNAII+S+S DRTCKVWSLS GKLLRN++FPSIIDAI L
Sbjct: 165 YEHNFSEHTLRVTDIVVGYGGSNAIIVSASADRTCKVWSLSKGKLLRNVVFPSIIDAIVL 224

Query: 201 DPGERVFYGG 211
           DPGE VFY G
Sbjct: 225 DPGEHVFYAG 234

[Close]

BLAST of Carg26317 vs. TrEMBL
Match: tr|A0A2N9EJA3|A0A2N9EJA3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2707 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 141 YEHNFTGHNLPVTNIVVDYGGSNAIIISSSVDRTCKVWSLSNGKLLRNIIFPSIIDAIAL 200
           YEHNF+ H L VT+IV  YGG NAII+S+S DRTCKVWSLS G+LLRNIIFPSIIDAIAL
Sbjct: 165 YEHNFSEHTLRVTDIVTGYGGCNAIIVSASEDRTCKVWSLSKGRLLRNIIFPSIIDAIAL 224

Query: 201 DPGERVFYGG 211
           DPGE VFY G
Sbjct: 225 DPGEHVFYAG 234

The following BLAST results are available for this feature:

BLAST of Carg26317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536629.1	5.3e-44	94.12	uncharacterized protein LOC111797743 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022941447.1	4.8e-29	66.67	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]	[more]
XP_022982251.1	4.8e-29	66.67	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima]	[more]
XP_023521513.1	6.3e-29	65.74	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022151059.1	1.4e-28	64.81	protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia] >XP_022151066.1 p...	[more]

BLAST of Carg26317 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	3.5e-26	73.61	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg26317 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M3B4\|RID3_ARATH	6.4e-25	73.61	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
sp\|Q9BV38\|WDR18_HUMAN	6.0e-07	38.03	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
sp\|Q4VBE8\|WDR18_MOUSE	1.7e-06	34.78	WD repeat-containing protein 18 OS=Mus musculus OX=10090 GN=Wdr18 PE=1 SV=1	[more]
sp\|Q499N3\|WDR18_RAT	1.7e-06	34.78	WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1	[more]
sp\|Q3SZD4\|WDR18_BOVIN	5.1e-06	33.82	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]

BLAST of Carg26317 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BU36\|A0A1S3BU36_CUCME	1.2e-28	66.67	protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4...	[more]
tr\|A0A0A0KZT0\|A0A0A0KZT0_CUCSA	1.2e-28	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1	[more]
tr\|A0A2J6L9Y5\|A0A2J6L9Y5_LACSA	6.8e-24	77.14	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X115620 PE=4 SV=1	[more]
tr\|A0A2P4LE71\|A0A2P4LE71_QUESU	8.9e-24	78.57	Protein root initiation defective 3 OS=Quercus suber OX=58331 GN=CFP56_32525 PE=...	[more]
tr\|A0A2N9EJA3\|A0A2N9EJA3_FAGSY	7.6e-23	78.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2707 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008236	serine-type peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26317-RA	Carg26317-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 138..179 e-value: 0.0064 score: 25.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 145..188 score: 10.275
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 134..225 e-value: 2.9E-8 score: 35.3
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 141..211
None	No IPR available	PANTHER	PTHR18763:SF0	WD REPEAT-CONTAINING PROTEIN 18	coord: 141..211
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 145..188 score: 9.968
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 105..236

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26317	Cla020659	Watermelon (97103) v1	carwmB0790
Carg26317	Csa4G639920	Cucumber (Chinese Long) v2	carcuB0808
Carg26317	MELO3C016764	Melon (DHL92) v3.5.1	carmeB0787
Carg26317	ClCG05G019990	Watermelon (Charleston Gray)	carwcgB0765
Carg26317	CSPI04G24210	Wild cucumber (PI 183967)	carcpiB0827
Carg26317	Cucsa.352310	Cucumber (Gy14) v1	carcgyB0903
Carg26317	CmaCh09G002380	Cucurbita maxima (Rimu)	carcmaB1097
Carg26317	CmoCh09G002300	Cucurbita moschata (Rifu)	carcmoB1067
Carg26317	CmoCh01G018920	Cucurbita moschata (Rifu)	carcmoB1068
Carg26317	Lsi04G015490	Bottle gourd (USVL1VR-Ls)	carlsiB728
Carg26317	Cp4.1LG06g01810	Cucurbita pepo (Zucchini)	carcpeB1108
Carg26317	Cp4.1LG02g06810	Cucurbita pepo (Zucchini)	carcpeB1107
Carg26317	CsGy4G022480	Cucumber (Gy14) v2	carcgybB0783
Carg26317	MELO3C016764.2	Melon (DHL92) v3.6.1	carmedB0799
Carg26317	CsaV3_4G034460	Cucumber (Chinese Long) v3	carcucB0831
Carg26317	Cla97C05G101650	Watermelon (97103) v2	carwmbB0828
Carg26317	Bhi09G002719	Wax gourd	carwgoB0926

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26317	Carg10584	Silver-seed gourd	carcarB606

The following block(s) are covering this gene:

None