CmaCh08G012820 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G012820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr08 : 7773651 .. 7773962 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

mRNA sequence

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

Coding sequence (CDS)

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

Protein sequence

MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQIPETGVFSGVNDSEDVDVSQGDVGMNNEDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP
Homology
[Close]
BLAST of CmaCh08G012820 vs. TrEMBL
Match: A0A0A0KGD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1 

Query: 1   MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQ-IPETGVFSGVNDS--E 60
           M MMKR LLLFA  LLL+ ADA    +V+KK ARKLAQ FS +  P+ GVF+  N+S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DVDVSQGDVGMNNE-----DEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DV+  DV  NN      ++D+ NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

[Close]
BLAST of CmaCh08G012820 vs. NCBI nr
Match: gi|449466542|ref|XP_004150985.1| (PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1 

Query: 1   MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQ-IPETGVFSGVNDS--E 60
           M MMKR LLLFA  LLL+ ADA    +V+KK ARKLAQ FS +  P+ GVF+  N+S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DVDVSQGDVGMNNE-----DEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DV+  DV  NN      ++D+ NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

The following BLAST results are available for this feature:
BLAST of CmaCh08G012820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh08G012820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGD6_CUCSA1.7e-2060.36Uncharacterized protein OS=Cucumis sativus GN=Csa_6G327960 PE=4 SV=1[more]
BLAST of CmaCh08G012820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh08G012820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466542|ref|XP_004150985.1|2.5e-2060.36PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G012820.1CmaCh08G012820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G012820Cucsa.247070Cucumber (Gy14) v1cgycmaB0689
CmaCh08G012820Cla009238Watermelon (97103) v1cmawmB878
CmaCh08G012820Csa6G327960Cucumber (Chinese Long) v2cmacuB909
CmaCh08G012820MELO3C021262Melon (DHL92) v3.5.1cmameB816
CmaCh08G012820ClCG06G004520Watermelon (Charleston Gray)cmawcgB804
CmaCh08G012820CSPI06G17760Wild cucumber (PI 183967)cmacpiB929
CmaCh08G012820CmoCh08G012490Cucurbita moschata (Rifu)cmacmoB912
CmaCh08G012820Lsi09G015010Bottle gourd (USVL1VR-Ls)cmalsiB811
CmaCh08G012820Cp4.1LG17g00170Cucurbita pepo (Zucchini)cmacpeB915
CmaCh08G012820MELO3C021262.2Melon (DHL92) v3.6.1cmamedB914
CmaCh08G012820CsaV3_6G028550Cucumber (Chinese Long) v3cmacucB1078
CmaCh08G012820Cla97C06G113940Watermelon (97103) v2cmawmbB921
CmaCh08G012820Bhi12G001735Wax gourdcmawgoB1091
CmaCh08G012820CsGy6G017360Cucumber (Gy14) v2cgybcmaB877
CmaCh08G012820Carg18892Silver-seed gourdcarcmaB0988
CmaCh08G012820Carg05554Silver-seed gourdcarcmaB0096
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G012820CmaCh17G003730Cucurbita maxima (Rimu)cmacmaB373
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G012820Watermelon (97103) v2cmawmbB911
CmaCh08G012820Watermelon (97103) v2cmawmbB914
CmaCh08G012820Wax gourdcmawgoB1089
CmaCh08G012820Wax gourdcmawgoB1107
CmaCh08G012820Cucurbita maxima (Rimu)cmacmaB298
CmaCh08G012820Cucurbita maxima (Rimu)cmacmaB554
CmaCh08G012820Cucumber (Gy14) v1cgycmaB0187
CmaCh08G012820Cucumber (Gy14) v1cgycmaB0731
CmaCh08G012820Cucurbita moschata (Rifu)cmacmoB883
CmaCh08G012820Cucurbita moschata (Rifu)cmacmoB887
CmaCh08G012820Wild cucumber (PI 183967)cmacpiB900
CmaCh08G012820Wild cucumber (PI 183967)cmacpiB903
CmaCh08G012820Cucumber (Chinese Long) v2cmacuB882
CmaCh08G012820Cucumber (Chinese Long) v2cmacuB885
CmaCh08G012820Melon (DHL92) v3.5.1cmameB850
CmaCh08G012820Watermelon (Charleston Gray)cmawcgB793
CmaCh08G012820Watermelon (Charleston Gray)cmawcgB796
CmaCh08G012820Watermelon (97103) v1cmawmB869
CmaCh08G012820Watermelon (97103) v1cmawmB873
CmaCh08G012820Cucurbita pepo (Zucchini)cmacpeB895
CmaCh08G012820Cucurbita pepo (Zucchini)cmacpeB928
CmaCh08G012820Cucurbita pepo (Zucchini)cmacpeB931
CmaCh08G012820Bottle gourd (USVL1VR-Ls)cmalsiB821
CmaCh08G012820Bottle gourd (USVL1VR-Ls)cmalsiB832
CmaCh08G012820Cucumber (Gy14) v2cgybcmaB270
CmaCh08G012820Cucumber (Gy14) v2cgybcmaB454
CmaCh08G012820Melon (DHL92) v3.6.1cmamedB950
CmaCh08G012820Silver-seed gourdcarcmaB0394
CmaCh08G012820Cucumber (Chinese Long) v3cmacucB1045
CmaCh08G012820Cucumber (Chinese Long) v3cmacucB1049