Carg05554 (gene) Silver-seed gourd

Overview
NameCarg05554
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_046 : 1129147 .. 1129620 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCCTTTGTCCTCCTCCACCCCATATCCTTAAATACCAAACAAATAACAAGGTAATTTTTAATTAAAACCATTAATTTTGGCTTTTATTTATCTAAATTAAGCTCTGTTTTTTTTTTTTTTTTTTTTTTCAGTCATATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGTGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

mRNA sequence

ATGTTTCCCTTTGTCCTCCTCCACCCCATATCCTTAAATACCAAACAAATAACAAGTCATATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGTGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

Coding sequence (CDS)

ATGTTTCCCTTTGTCCTCCTCCACCCCATATCCTTAAATACCAAACAAATAACAAGTCATATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGTGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

Protein sequence

MFPFVLLHPISLNTKQITSHMMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDVEVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP
Homology
[Close]
BLAST of Carg05554 vs. NCBI nr
Match: XP_004150985.1 (PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_6G327960 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 51  ARKLARSLGGQTTPETEVFSGVYEHGPEDVEVVVXXXXXXXXXXXXXXXXXXXNLGYKNY 110
           ARKLA+    + TP+  VF+   E   E+     XXXXXXXXXXXXXXXXXXXNLGYKNY
Sbjct: 30  ARKLAQGFSERRTPKAGVFNDANESDLEN-XXXXXXXXXXXXXXXXXXXXXXXNLGYKNY 89

Query: 111 GKGSDTETHRYFSSDKPYEP 131
           GKGSDTETHRYFSSDKPY P
Sbjct: 90  GKGSDTETHRYFSSDKPYRP 108

[Close]
BLAST of Carg05554 vs. TrEMBL
Match: tr|A0A0A0KGD6|A0A0A0KGD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 56/80 (70.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 51  ARKLARSLGGQTTPETEVFSGVYEHGPEDVEVVVXXXXXXXXXXXXXXXXXXXNLGYKNY 110
           ARKLA+    + TP+  VF+   E   E+     XXXXXXXXXXXXXXXXXXXNLGYKNY
Sbjct: 30  ARKLAQGFSERRTPKAGVFNDANESDLEN-XXXXXXXXXXXXXXXXXXXXXXXNLGYKNY 89

Query: 111 GKGSDTETHRYFSSDKPYEP 131
           GKGSDTETHRYFSSDKPY P
Sbjct: 90  GKGSDTETHRYFSSDKPYRP 108

The following BLAST results are available for this feature:
BLAST of Carg05554 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150985.12.7e-0770.00PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hy... [more]
BLAST of Carg05554 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg05554 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg05554 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGD6|A0A0A0KGD6_CUCSA1.8e-0770.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05554-RACarg05554-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..130

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05554Cla009238Watermelon (97103) v1carwmB0073
Carg05554Csa6G327960Cucumber (Chinese Long) v2carcuB0081
Carg05554MELO3C021262Melon (DHL92) v3.5.1carmeB0067
Carg05554ClCG06G004520Watermelon (Charleston Gray)carwcgB0073
Carg05554CSPI06G17760Wild cucumber (PI 183967)carcpiB0085
Carg05554Cucsa.247070Cucumber (Gy14) v1carcgyB0082
Carg05554CmaCh08G012820Cucurbita maxima (Rimu)carcmaB0096
Carg05554CmaCh17G003730Cucurbita maxima (Rimu)carcmaB0091
Carg05554CmoCh08G012490Cucurbita moschata (Rifu)carcmoB0104
Carg05554Lsi09G015010Bottle gourd (USVL1VR-Ls)carlsiB061
Carg05554Cp4.1LG12g03300Cucurbita pepo (Zucchini)carcpeB0099
Carg05554Cp4.1LG17g00170Cucurbita pepo (Zucchini)carcpeB0102
Carg05554CsGy6G017360Cucumber (Gy14) v2carcgybB0080
Carg05554MELO3C021262.2Melon (DHL92) v3.6.1carmedB0068
Carg05554CsaV3_6G028550Cucumber (Chinese Long) v3carcucB0087
Carg05554Bhi12G001735Wax gourdcarwgoB0080
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05554Carg18892Silver-seed gourdcarcarB085
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05554Wax gourdcarwgoB0079
Carg05554Wax gourdcarwgoB0085
Carg05554Wax gourdcarwgoB0086
Carg05554Silver-seed gourdcarcarB079
Carg05554Silver-seed gourdcarcarB081
Carg05554Cucumber (Gy14) v2carcgybB0070
Carg05554Cucumber (Gy14) v2carcgybB0072
Carg05554Cucumber (Gy14) v1carcgyB0076
Carg05554Cucumber (Gy14) v1carcgyB0083
Carg05554Cucurbita maxima (Rimu)carcmaB0089
Carg05554Cucurbita maxima (Rimu)carcmaB0095
Carg05554Cucurbita moschata (Rifu)carcmoB0096
Carg05554Cucurbita moschata (Rifu)carcmoB0095
Carg05554Cucurbita moschata (Rifu)carcmoB0097
Carg05554Cucurbita moschata (Rifu)carcmoB0101
Carg05554Cucurbita moschata (Rifu)carcmoB0103
Carg05554Cucurbita pepo (Zucchini)carcpeB0098
Carg05554Cucurbita pepo (Zucchini)carcpeB0106
Carg05554Cucurbita pepo (Zucchini)carcpeB0108
Carg05554Cucurbita pepo (Zucchini)carcpeB0109
Carg05554Wild cucumber (PI 183967)carcpiB0075
Carg05554Wild cucumber (PI 183967)carcpiB0073
Carg05554Cucumber (Chinese Long) v2carcuB0070
Carg05554Cucumber (Chinese Long) v2carcuB0071
Carg05554Cucumber (Chinese Long) v3carcucB0077
Carg05554Cucumber (Chinese Long) v3carcucB0079
Carg05554Bottle gourd (USVL1VR-Ls)carlsiB062
Carg05554Bottle gourd (USVL1VR-Ls)carlsiB064
Carg05554Melon (DHL92) v3.5.1carmeB0074
Carg05554Melon (DHL92) v3.6.1carmedB0075
Carg05554Watermelon (Charleston Gray)carwcgB0070
Carg05554Watermelon (Charleston Gray)carwcgB0071
Carg05554Watermelon (Charleston Gray)carwcgB0072
Carg05554Watermelon (97103) v1carwmB0068
Carg05554Watermelon (97103) v1carwmB0070
Carg05554Watermelon (97103) v1carwmB0071
Carg05554Watermelon (97103) v2carwmbB0067
Carg05554Watermelon (97103) v2carwmbB0068
Carg05554Watermelon (97103) v2carwmbB0069
Carg05554Watermelon (97103) v2carwmbB0070