Cla009238 (gene) Watermelon (97103) v1

Overview
NameCla009238
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 4879722 .. 4880081 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAG

mRNA sequence

ATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAG

Coding sequence (CDS)

ATGATTATGATGAAGAGGGTTCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCCGCGATGCACGACGTCGTCGACAAGAAGCATACACGTAAGCTAGCTCAAGGCTTCGGTGGCGGGAGAACCCCCGAAACGCGAGTGTTCTACGTTGAAAATAAGCCTCACCCTGATCATATTGCTGATGTTGCAAATGAGCCTGACCCTGATCATGCTGATGTTGCTAATGACGTTGGAGCTAACAAAAACAACACTGACGACGACGATGAAAATCTTGGTTATAAAAATTACGGCAAGGGTTCCGACACTGAAACTCACCGTTACTTCTCGAGCGATAAGCCATACAGACCCTAG

Protein sequence

MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPDHIADVANEPDPDHADVANDVGANKNNTDDDDENLGYKNYGKGSDTETHRYFSSDKPYRP
Homology
[Close]
BLAST of Cla009238 vs. TrEMBL
Match: A0A0A0KGD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-29
Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 1 

Query: 1   MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPD 60
           MIMMKRVLLLFAALLLLLMADA    +V+KK  RKLAQGF   RTP+  VF         
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVF--------- 60

Query: 61  HIADVANEPDPDHADVA-NDVGANKNNTDD---DDENLGYKNYGKGSDTETHRYFSSDKP 120
              + ANE D ++ DVA +DV AN N  DD   DD NLGYKNYGKGSDTETHRYFSSDKP
Sbjct: 61  ---NDANESDLENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKP 108

[Close]
BLAST of Cla009238 vs. NCBI nr
Match: gi|449466542|ref|XP_004150985.1| (PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.5e-29
Identity = 80/123 (65.04%), Postives = 87/123 (70.73%), Query Frame = 1 

Query: 1   MIMMKRVLLLFAALLLLLMADAAMHDVVDKKHTRKLAQGFGGGRTPETRVFYVENKPHPD 60
           MIMMKRVLLLFAALLLLLMADA    +V+KK  RKLAQGF   RTP+  VF         
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVF--------- 60

Query: 61  HIADVANEPDPDHADVA-NDVGANKNNTDD---DDENLGYKNYGKGSDTETHRYFSSDKP 120
              + ANE D ++ DVA +DV AN N  DD   DD NLGYKNYGKGSDTETHRYFSSDKP
Sbjct: 61  ---NDANESDLENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKP 108

The following BLAST results are available for this feature:
BLAST of Cla009238 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGD6_CUCSA5.3e-2965.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G327960 PE=4 SV=1[more]
BLAST of Cla009238 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466542|ref|XP_004150985.1|7.5e-2965.04PREDICTED: uncharacterized protein LOC101207042 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009238Cla009238.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla009238Cla97C06G113940Watermelon (97103) v2wmwmbB406
Cla009238Csa6G327960Cucumber (Chinese Long) v2cuwmB543
Cla009238MELO3C021262Melon (DHL92) v3.5.1mewmB141
Cla009238ClCG06G004520Watermelon (Charleston Gray)wcgwmB344
Cla009238CSPI06G17760Wild cucumber (PI 183967)cpiwmB562
Cla009238Cucsa.247070Cucumber (Gy14) v1cgywmB464
Cla009238CmaCh08G012820Cucurbita maxima (Rimu)cmawmB878
Cla009238CmaCh17G003730Cucurbita maxima (Rimu)cmawmB358
Cla009238CmoCh08G012490Cucurbita moschata (Rifu)cmowmB867
Cla009238Lsi09G015010Bottle gourd (USVL1VR-Ls)lsiwmB040
Cla009238Cp4.1LG17g00170Cucurbita pepo (Zucchini)cpewmB340
Cla009238CsGy6G017360Cucumber (Gy14) v2cgybwmB507
Cla009238MELO3C021262.2Melon (DHL92) v3.6.1medwmB139
Cla009238Carg05554Silver-seed gourdcarwmB0073
Cla009238Carg18892Silver-seed gourdcarwmB0701
Cla009238CsaV3_6G028550Cucumber (Chinese Long) v3cucwmB568
Cla009238Bhi12G001735Wax gourdwgowmB105
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla009238Cucurbita pepo (Zucchini)cpewmB161
Cla009238Cucurbita pepo (Zucchini)cpewmB623
Cla009238Cucurbita pepo (Zucchini)cpewmB853
Cla009238Bottle gourd (USVL1VR-Ls)lsiwmB125
Cla009238Bottle gourd (USVL1VR-Ls)lsiwmB280
Cla009238Cucumber (Gy14) v2cgybwmB262
Cla009238Melon (DHL92) v3.6.1medwmB474
Cla009238Silver-seed gourdcarwmB0270
Cla009238Cucumber (Chinese Long) v3cucwmB190
Cla009238Cucumber (Chinese Long) v3cucwmB288
Cla009238Watermelon (97103) v2wmwmbB389
Cla009238Watermelon (97103) v2wmwmbB394
Cla009238Watermelon (97103) v2wmwmbB402
Cla009238Watermelon (97103) v2wmwmbB420
Cla009238Wax gourdwgowmB055
Cla009238Wax gourdwgowmB159
Cla009238Wax gourdwgowmB238
Cla009238Watermelon (97103) v1wmwmB038
Cla009238Watermelon (97103) v1wmwmB056
Cla009238Watermelon (97103) v1wmwmB138
Cla009238Watermelon (97103) v1wmwmB161
Cla009238Cucumber (Gy14) v1cgywmB108
Cla009238Cucumber (Gy14) v1cgywmB483
Cla009238Cucurbita maxima (Rimu)cmawmB250
Cla009238Cucurbita maxima (Rimu)cmawmB811
Cla009238Cucurbita moschata (Rifu)cmowmB239
Cla009238Cucurbita moschata (Rifu)cmowmB353
Cla009238Cucurbita moschata (Rifu)cmowmB803
Cla009238Melon (DHL92) v3.5.1mewmB255
Cla009238Melon (DHL92) v3.5.1mewmB486
Cla009238Watermelon (Charleston Gray)wcgwmB081
Cla009238Watermelon (Charleston Gray)wcgwmB218
Cla009238Watermelon (Charleston Gray)wcgwmB311
Cla009238Cucumber (Chinese Long) v2cuwmB178
Cla009238Cucumber (Chinese Long) v2cuwmB279