CmaCh08G000680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G000680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProbable thylakoid lumen protein sll1769
LocationCma_Chr08 : 372677 .. 375083 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCCACCCCCCAAGATCTTTCTTTATATGTTCCTGTTTGGCTGTCGAGAAATCGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTAAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTACTTTGAATCTTCGCCTACTCTGTTTTTGTTTTGTTTTCCTATATGTTCTTAGTTATTGGCGAATTTTACGAAGGTTTTAGTGGTGAAATCTGTTTTAATCTGCTATTGATTCTCCGATTTGAGGGCATTTCTGCGTTTTTCTTGATTTTTGTTTGCAGATTGAACACTTGTTTTGGATTTCATAAAAGAATGATCGGTTTTGGATTTCATATCTGATTATATGCCTACAAACTGTTTGATATATTGTCAATGGCTTTATTAAGTATGAAGTTCGCCTGATTTTATAAGATTAGTATCCATTTCCCCCTTAAGTAGGAATTTGTTCTCCTTGATCCTTTTTGTACTCTGAATTTGGATCAATTTATGAGATTTATCACGTTCTACAGGAGGAAATATTGCACTTATTTCCTTTTTTTGGTGAAGATTTGGAAGCTTAATGAATTTATGGGATGGTAATGATCTTAAGAACATGATATTGATCTTATTAGAAGAAAATTCTGTAGAATCACAGTGGAAACATAATCTTTTTGGTTTCTATGATCTTACAGTTTCGTTACTGTTATCAAGCATTCAACGAGCTAGCTGTATGATGCAGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGTAAGATGCTCCAAAGTTAATGATAGAACTTCCTAACTTTGTTTTTAATTTACTTTCCCTTTTACATGATAAAAGGGTTGACCAACTAATGAACTTAAAATCCGATGTCCTATGAGCTATCTCGACAACTAAACTTAGTCGAGTCTAAGAGGTTGTCTTGTGAGAGTTGTCGAGGAATGGATATCAAAAGAGAAAACGACACTGCATTGTGGTCTCTTGTACTGTGGATTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAGCAAAATAAGACAACTGTGAGATCTCACATTGGATGGGGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAACGCGTTTTGAAGACCTCGAGGGGAAACTCGAAGGGAAAACCTAAAGAGGACAATATCTGCTAGTGGTGGGTTTAAACTGTAACCATTGAAAATCTACGGTAGGTTAAAGCTTTTTGAGTGGAGCTGTAGGTTAGGCCTGGATTGAAGCTTTTACTTAGAAACCATGATGCCTGGCTTAAAATTGCTGTGGCTCTAGCATCTTTCTTATTCATTTCGAGTGTTTTTAGGCTAAAATTCATGGTTCGGGGCTCAGCTTTCGATTTAGTTTCGATGTGATGAGATTGGAAGTTTGAGATTAAAATTGACCGAGTAGAGTATGAAGAGTAAAAGCAAAGAAAATTCCCTTATGCATGCATTATTGTTCTCTTAAGAACATTTTAAATTTCCTCTGAAACTAGATTGAAGTGAATGAAGCTCAATATTGCTGAAAATGGCATATTCATACTGGAAACAAACTTTGTACAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTTTATATAGAAGACTTATAGTGAATGTAGCCTTTATATACTGATGATGGGTTGGGTTGGTTATTTAGTCTCAAAGTCATATAGTAATTGCCTTTTAAGATTCGTCTTTCAGAGATATCTTATGAGATTCTAGATATCTTATGAGATTCTTGACGCGATCGAACACAACCCATTTAGTAATATTATTATTTGAAATTTTGAATATAGGAACGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTTGTACTTGATCAAGTAGGGAGCTAAGAAACTTCTCGAAGAAAAATAAATGTCTATCCAA

mRNA sequence

TTCCCCACCCCCCAAGATCTTTCTTTATATGTTCCTGTTTGGCTGTCGAGAAATCGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTAAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTTTATATAGAAGACTTATAGTGAATGTAGCCTTTATATACTGATGATGGGTTGGGTTGGTTATTTAGTCTCAAAGTCATATAGTAATTGCCTTTTAAGATTCGTCTTTCAGAGATATCTTATGAGATTCTAGATATCTTATGAGATTCTTGACGCGATCGAACACAACCCATTTAGTAATATTATTATTTGAAATTTTGAATATAGGAACGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTTGTACTTGATCAAGTAGGGAGCTAAGAAACTTCTCGAAGAAAAATAAATGTCTATCCAA

Coding sequence (CDS)

ATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAA

Protein sequence

MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFVVRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPNQDPPLGDEE
Homology
[Close]
BLAST of CmaCh08G000680 vs. Swiss-Prot
Match: Y4320_ARATH (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=2 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-21
Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 1 

Query: 10  SPSHFSILHSKPK-----ITHLSSPSNLKFRPI-----SPIGSPRFVVRCS-----SGDD 69
           SPS FS+ +S  +      T  +S SN +F  +     S   S      CS     SG++
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSP-TIEVASSSTTST 150
           E+AAR+  E QG ++S   +  R+P  + VAS ++TST
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTST 165

[Close]
BLAST of CmaCh08G000680 vs. TrEMBL
Match: A0A0A0K6Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-48
Identity = 125/187 (66.84%), Postives = 143/187 (76.47%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLS-----------SPSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH S           +PSNLKFR IS   P G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVLSGIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAARDSKEVQGPV--SSSVISPKIEVFSSPTS-------SSPDADSESVVN 178

[Close]
BLAST of CmaCh08G000680 vs. TrEMBL
Match: D7U3G3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 1 

Query: 3   SGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPI--SPIG--------SPRFVVRCSS- 62
           SGV+ S  P+ FS L  +PK         L  R +  + +G            VV+C+S 
Sbjct: 2   SGVSASPPPTFFS-LEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSS 61

Query: 63  --------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQ 122
                   GD DSR++L+AFFLGKALAEAL ER+EST+GE LS +GRLQAEQQKQ+ DFQ
Sbjct: 62  TNPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQ 121

Query: 123 EEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST---TSTNQQQLSNPSSD 173
           +EV+ERAK+A+EKAAR+A E QG I  S++  + ++   +S+T   T  N   LSNP+S 
Sbjct: 122 DEVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSP 181

[Close]
BLAST of CmaCh08G000680 vs. TrEMBL
Match: M5VKL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011364mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 93/208 (44.71%), Postives = 120/208 (57.69%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKIT-----------HLSSPSNLKFRPISPIG---SPRFV 60
           M SGV  S SP     L SKP+ +           H    S+LK R     G   S R  
Sbjct: 1   MISGVLASASPQAVCSLLSKPRTSCCCYASSSVSGHKPCSSDLKLRSFGLFGTKGSQRSR 60

Query: 61  VRCSS------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL 120
           V+CSS      GD DSR+VL+AFFLGKALAEA+ ER+ES++GE LS IGRLQAEQQKQ+ 
Sbjct: 61  VQCSSSSGPGSGDGDSRSVLDAFFLGKALAEAINERIESSVGEFLSTIGRLQAEQQKQVE 120

Query: 121 DFQEEVIERAKKAQEKAARDAKEVQG-----------PISSSSSIR--SPTIEVASSSTT 176
           +FQE+V+ERAK+A+EKAAR+A EVQG           P+  ++ +   + T    +S+ T
Sbjct: 121 EFQEDVLERAKRAKEKAAREAAEVQGLAKPPTAEYITPVKITNGVTQVTSTTTTTTSNVT 180

[Close]
BLAST of CmaCh08G000680 vs. TrEMBL
Match: A0A164Z4F4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 69/140 (49.29%), Postives = 96/140 (68.57%), Query Frame = 1 

Query: 43  PRFVVRCSS------------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGR 102
           PR ++RC+S            G+++++TVL+AFFLGKALAE L ER+EST+GE+LS IGR
Sbjct: 3   PRLILRCNSSSSSGPGGPSSPGENENKTVLDAFFLGKALAETLNERIESTVGEILSTIGR 62

Query: 103 LQAEQQKQILDFQEEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTN 162
           LQAEQQKQ+ DFQEEV+ERAK++++KAA++A EVQG I  SS+I + TI+    S   T 
Sbjct: 63  LQAEQQKQVEDFQEEVLERAKRSKDKAAKEALEVQGLIPKSSAIEASTIDSTVPSVNETQ 122

Query: 163 QQQLSNPSSDSGTAPNQDPP 171
              +++      + P  D P
Sbjct: 123 SIVITDEDPKPTSTPTPDVP 142

[Close]
BLAST of CmaCh08G000680 vs. TrEMBL
Match: A0A061DVB5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002978 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = 1 

Query: 51  SGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERA 110
           SGD++SR VL+AFFLGKALAEAL ER+ESTIGE L  +GRLQAEQQKQ+ DFQEEV+ERA
Sbjct: 74  SGDNESRNVLDAFFLGKALAEALNERIESTIGEFLGAVGRLQAEQQKQVQDFQEEVLERA 133

Query: 111 KKAQEKAARDAKEVQGPISSSSSIRSPTIE--VASSSTTSTNQQQLSNPSS 160
           K+A+EKAAR+A E QG I  S+++ + ++    AS+++  T + ++S  SS
Sbjct: 134 KRAKEKAAREAMEAQGLIPKSTAVNATSVTNGAASNASPPTAKDRISGKSS 184

[Close]
BLAST of CmaCh08G000680 vs. TAIR10
Match: AT4G13200.1 (AT4G13200.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-22
Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 1 

Query: 10  SPSHFSILHSKPK-----ITHLSSPSNLKFRPI-----SPIGSPRFVVRCS-----SGDD 69
           SPS FS+ +S  +      T  +S SN +F  +     S   S      CS     SG++
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSP-TIEVASSSTTST 150
           E+AAR+  E QG ++S   +  R+P  + VAS ++TST
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTST 165

[Close]
BLAST of CmaCh08G000680 vs. NCBI nr
Match: gi|449443804|ref|XP_004139667.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-48
Identity = 125/187 (66.84%), Postives = 143/187 (76.47%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLS-----------SPSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH S           +PSNLKFR IS   P G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVLSGIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAARDSKEVQGPV--SSSVISPKIEVFSSPTS-------SSPDADSESVVN 178

[Close]
BLAST of CmaCh08G000680 vs. NCBI nr
Match: gi|659092884|ref|XP_008447268.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 123/187 (65.78%), Postives = 144/187 (77.01%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPS-----------NLKFRPIS---PIGSPRFV 60
           M+S +T SVS S FS++ +KPKITH SSPS           NL+FR IS   P GS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRT+L+AFFLGKALAEALTER+ESTIGEVLSGIG+LQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAAR+AKEVQ P+  SSS+ SPTIEV+SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAAREAKEVQRPV--SSSVISPTIEVSSSPTS-------SSPDADSESGVN 178

[Close]
BLAST of CmaCh08G000680 vs. NCBI nr
Match: gi|1009149073|ref|XP_015892283.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 99/201 (49.25%), Postives = 122/201 (60.70%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFV--VRCS-------- 60
           M SGV+ S S   F  L SKPK TH+ S S L F P +   S   V  VR S        
Sbjct: 1   MKSGVSASASSPIFPSLPSKPKTTHVFSASRLAF-PRTLFWSDLKVQGVRFSTTKGLVCR 60

Query: 61  ---------SGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILD 120
                    SGD +SR+VL+AFFLGKALAEAL ERVES +GE+LS IGRLQ+EQQKQ+LD
Sbjct: 61  SNSRPGDTGSGDSESRSVLDAFFLGKALAEALNERVESAVGELLSTIGRLQSEQQKQVLD 120

Query: 121 FQEEVIERAKKAQEKAARDAKEVQG----PISSSSSIR---SPTIEVASSSTTSTNQQQL 173
           FQEEV+ERAK+A+EKAAR+A E QG    P+ ++++ R   +P + V SS T+       
Sbjct: 121 FQEEVLERAKRAKEKAAREALEAQGLTTKPVKANTTPRPNGAPLVSVTSSPTSDD----- 180

[Close]
BLAST of CmaCh08G000680 vs. NCBI nr
Match: gi|225464240|ref|XP_002267372.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 1 

Query: 3   SGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPI--SPIG--------SPRFVVRCSS- 62
           SGV+ S  P+ FS L  +PK         L  R +  + +G            VV+C+S 
Sbjct: 2   SGVSASPPPTFFS-LEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSS 61

Query: 63  --------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQ 122
                   GD DSR++L+AFFLGKALAEAL ER+EST+GE LS +GRLQAEQQKQ+ DFQ
Sbjct: 62  TNPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQ 121

Query: 123 EEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST---TSTNQQQLSNPSSD 173
           +EV+ERAK+A+EKAAR+A E QG I  S++  + ++   +S+T   T  N   LSNP+S 
Sbjct: 122 DEVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSP 181

[Close]
BLAST of CmaCh08G000680 vs. NCBI nr
Match: gi|595793473|ref|XP_007200485.1| (hypothetical protein PRUPE_ppa011364mg [Prunus persica])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 93/208 (44.71%), Postives = 120/208 (57.69%), Query Frame = 1 

Query: 1   MTSGVTPSVSPSHFSILHSKPKIT-----------HLSSPSNLKFRPISPIG---SPRFV 60
           M SGV  S SP     L SKP+ +           H    S+LK R     G   S R  
Sbjct: 1   MISGVLASASPQAVCSLLSKPRTSCCCYASSSVSGHKPCSSDLKLRSFGLFGTKGSQRSR 60

Query: 61  VRCSS------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL 120
           V+CSS      GD DSR+VL+AFFLGKALAEA+ ER+ES++GE LS IGRLQAEQQKQ+ 
Sbjct: 61  VQCSSSSGPGSGDGDSRSVLDAFFLGKALAEAINERIESSVGEFLSTIGRLQAEQQKQVE 120

Query: 121 DFQEEVIERAKKAQEKAARDAKEVQG-----------PISSSSSIR--SPTIEVASSSTT 176
           +FQE+V+ERAK+A+EKAAR+A EVQG           P+  ++ +   + T    +S+ T
Sbjct: 121 EFQEDVLERAKRAKEKAAREAAEVQGLAKPPTAEYITPVKITNGVTQVTSTTTTTTSNVT 180

The following BLAST results are available for this feature:
BLAST of CmaCh08G000680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4320_ARATH3.8e-2146.84Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g... [more]
BLAST of CmaCh08G000680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6Q2_CUCSA2.6e-4866.84Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1[more]
D7U3G3_VITVI2.3e-2546.88Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=... [more]
M5VKL4_PRUPE1.5e-2444.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011364mg PE=4 SV=1[more]
A0A164Z4F4_DAUCA3.7e-2349.29Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1[more]
A0A061DVB5_THECC1.1e-2259.46Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002978 PE=4 SV=1[more]
BLAST of CmaCh08G000680 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G13200.12.2e-2246.84 unknown protein[more]
BLAST of CmaCh08G000680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443804|ref|XP_004139667.1|3.7e-4866.84PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus][more]
gi|659092884|ref|XP_008447268.1|1.8e-4765.78PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo][more]
gi|1009149073|ref|XP_015892283.1|2.6e-2549.25PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba][more]
gi|225464240|ref|XP_002267372.1|3.3e-2546.88PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera][more]
gi|595793473|ref|XP_007200485.1|2.2e-2444.71hypothetical protein PRUPE_ppa011364mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G000680.1CmaCh08G000680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 93..120
scor
NoneNo IPR availablePANTHERPTHR35745FAMILY NOT NAMEDcoord: 50..168
score: 2.0
NoneNo IPR availablePANTHERPTHR35745:SF1SUBFAMILY NOT NAMEDcoord: 50..168
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G000680Cucsa.078380Cucumber (Gy14) v1cgycmaB0145
CmaCh08G000680Cla014965Watermelon (97103) v1cmawmB859
CmaCh08G000680Csa7G337600Cucumber (Chinese Long) v2cmacuB916
CmaCh08G000680ClCG09G009110Watermelon (Charleston Gray)cmawcgB789
CmaCh08G000680CSPI07G14100Wild cucumber (PI 183967)cmacpiB936
CmaCh08G000680CmoCh08G000680Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G000680CmoCh17G012270Cucurbita moschata (Rifu)cmacmoB892
CmaCh08G000680Lsi02G020730Bottle gourd (USVL1VR-Ls)cmalsiB824
CmaCh08G000680Cp4.1LG12g11220Cucurbita pepo (Zucchini)cmacpeB899
CmaCh08G000680Cp4.1LG17g09740Cucurbita pepo (Zucchini)cmacpeB914
CmaCh08G000680MELO3C012764.2Melon (DHL92) v3.6.1cmamedB936
CmaCh08G000680CsaV3_7G025830Cucumber (Chinese Long) v3cmacucB1086
CmaCh08G000680Cla97C09G171900Watermelon (97103) v2cmawmbB943
CmaCh08G000680Bhi09G001148Wax gourdcmawgoB1136
CmaCh08G000680CsGy7G012720Cucumber (Gy14) v2cgybcmaB975
CmaCh08G000680Carg25537Silver-seed gourdcarcmaB0592
CmaCh08G000680Carg04899Silver-seed gourdcarcmaB0112
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G000680CmaCh17G012470Cucurbita maxima (Rimu)cmacmaB378
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G000680Cucurbita maxima (Rimu)cmacmaB466
CmaCh08G000680Wild cucumber (PI 183967)cmacpiB907
CmaCh08G000680Watermelon (Charleston Gray)cmawcgB810
CmaCh08G000680Bottle gourd (USVL1VR-Ls)cmalsiB837
CmaCh08G000680Cucumber (Gy14) v2cgybcmaB457
CmaCh08G000680Silver-seed gourdcarcmaB1090
CmaCh08G000680Wax gourdcmawgoB1126