Cp4.1LG12g11220 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g11220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA04g07010D protein
Location	Cp4.1LG12 : 8927317 .. 8930281 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGGTACCAAATACCAATCCACGAAAGCGGCAATTGGGCATGTCGAACAAGGAATGAGCAAGAACAGGGAGGGTTCTGGGTCACTGTCATTTCATTTCCCCGCCAAAGATCTCTCCTTATAGATTCCTGTTTGGCTGTCAAGAAACTCAGAGAGAAAACGTTGGGAAAGTGCGCCGGATAATCTTCCATTCCGTCGCACAAAATGAGTAGCGGGGTTGCATCTTCAGTTTCCCCATCCCTTTTCTCGGGTGTACCCACTAAATCAAAGATTACCCATTGTTCATCTCCCTCTCTTGTTCGATTTCGATCCTCATCCACTTCCTCAAATCTCAAATTTCGACCGAGTGGGTCTCTCAGATTCATAGCCAGTTGCAGCTCCGGTACCTTTAATCTTCGCCTCCTCTGTTTTTGTCTTCCAATCTGTTGTTAGTTATTGGGGATTCTGTTATTGGTTCTGAGATTTGAGTGAATCTCTGCGTTTTTGTTGGCTTTTATCTGAATTTCATAAAACAATGATGGGTTTACTTCTCGTGTGGAGCTATCTGATTATTTGACTACAAGGTGTTTGATCTATTGTCAATGGTTTTATTTGGTGTGAAGTTGGCCTCATTTTGTTTGGTTTGTTTTCTTTAACTCAATGCATTTCCTTGTTAAAGAAAATTGGGTTTCTAGACTAGGAATTCATTTTCCTTGCAGTTAACTCCTTGGCAAATATAACACTCTTTGGCGATCTTATATTAGACTTTTGTATTTAGGTCTTTAACCATGTTCTTGTTCTCTGATTTCATGAAGAACTTTCTCAATGATATTCCAAACTGATAATCATAAATAAAAAGAATCCTACTTTTTGTCTAAATATGTGTACAATGGAATACCCATGTGCCCTTTTCATAGAATTTTCACTTCTCTGTATTTTCCTCATTGCCGATATATTGAAGGAGAAAAAGTAGACAAGTTTAAGAAGATGATATGAATCTCATTAGAGAAAATTCAGTAGAAACGGAGGAAAAACAGCCTTTTGGTTTCTGTGATCTTCGAGTTTTGTTAATTTTATCAAGCATGCAATGAGCTAGCTGTATGATGCAGGTGATGGTGACAACAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTTGCAGAAACCTTAACTGAGCGTGTCGAATCAACTGTTGGAGTGGTTTTGAGTGAGATTGGTAGGCTGCAAGCTGAACGACAACAACAAATTATTGATTTCCAGGTAGGGTACACCAAAGTTAATGATAAACTTAGATGACTGATATGAGATTCTGATTTTCATGTGCTTCCCATTTGTGTGGTTAATCACCAGTTTACTCTCAGTTTCTCTTAAAAAATGAGGGCATAAATTTGCATAGAATCTCCTAATGTTGTTGTTTTTTATTTACTGCATCGTGGTCTCCTGAACTACGGATTATACAAAACCAATGAACAAAAAATATGGCTGTATGGCAAAGTCATTGAAAATCCATGGCTGGTGTTTCTGCAATGTTTTCTCTCTTGGAGATTAGCTTATGAATTTAACGACTTTGAGTCATAAGTATCTGATGAAACTGCTGTAGCTTAAAACTTTTTTATTGTAGCAACACGTTAGTCCTGGATTGGGATGTTGGTTACTGTTTCTGAGATAAACGTTTATACTGTTCTTAAGTGAGTCGATTTTAACCTTGAACTTTAATGTCATCGAATTGAGCTCTAAACTTGAATAAGTGGTCAAATTTATAGATCATTCGACTAAGTTTTCGTTTCTTTTGAAAACTGTCTGGCTATAAGCATCATTATGGTTGGACGAGGTTCCTTTTGTGAGTACTTATTGTTTTGATTGTATGAGATATTATGTTTTCCAGATGGAGCTTGGCATTTTATTGATAAGCTTGATGGCTTTTTACTCGATTTTGTGGTTTACGTTTCGGTATTTTTATGGCTGGGATTTTGGCATTTTCGGTATTTCCTCTCAAACTAGACTGGCATGCATGAGGTGAATGAATCTCAATATTGAGAGTGTGGGGTTGTGTGCTATCTTGTCGGGGCGAGAGAAACAATTGAGAGTTCTTAGCGATGTTCGGTCTCGTATTAGATTCTCTGTTACTCTCTAGACCTCTGTTTCTGAGCTCTTTCGTAATTATTCGCTAGGTCTTATTTCGCTTGACCAGAGCGCTTTCTTGTAGTTTCGATCTCGTGGGGTTTCTTCTATGCCCTTATGGACTAAAATACCGACACTCTTTTATGCTCTCTTCTTTTCTGCCTATGCTGAAAATGGCATGTTCTTACTTGAACGAGCTTTATATACAGGAGGAGGTTATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGAACGTGATGCCAAAGAAGCACAAGGACCCATCTCCTCTTCGATAATATCGGCTACAATCGAAGTTACTTCTTCTCCAACTGCTTCGAGCAATGGACAACAACGCTCAAGTCCGAACGCATATTCAGAAACTGTGGTGAATCAAGATCCTCCTCGTGGTGATGAAGAGTAATCGTCTCTTGTCGATCTCTCTTGGTTATTATACACATCCAATGATTGCAACATGTAGTCTGATGATGATAAGTTAGTTATTTGGTCTTGAAATCATACAGAGATTGTCTTCTTAAGGTTCGTCTATTAGGTATCTTATGAGTTTCTTGGTGTTGAATAATTCAGACCGAACAACCAGTTACGATCGTTCGATGTGTATTAGTAAATCATCTATTTTCGTTCATTCGAGCAGACTGTAGTTGAATTATTTGGCTGATTTTCAGTGTATCTTTCATAGTTTGAGCTCGATTACTCGTGTATTGTAGTCATTGCATTTGATAGTGTGTTTTTAAATCTGTTTTTAGAATCTATGATCGAAATAGTGCGGATTCATAAAACAATATTTTCTAGAATGGTTGATTGGGTATTTGAATTCATAAAACTATTTTTTTATGTGAAAAG

mRNA sequence

TAGGGTACCAAATACCAATCCACGAAAGCGGCAATTGGGCATGTCGAACAAGGAATGAGCAAGAACAGGGAGGGTTCTGGGTCACTGTCATTTCATTTCCCCGCCAAAGATCTCTCCTTATAGATTCCTGTTTGGCTGTCAAGAAACTCAGAGAGAAAACGTTGGGAAAGTGCGCCGGATAATCTTCCATTCCGTCGCACAAAATGAGTAGCGGGGTTGCATCTTCAGTTTCCCCATCCCTTTTCTCGGGTGTACCCACTAAATCAAAGATTACCCATTGTTCATCTCCCTCTCTTGTTCGATTTCGATCCTCATCCACTTCCTCAAATCTCAAATTTCGACCGAGTGGGTCTCTCAGATTCATAGCCAGTTGCAGCTCCGGTGATGGTGACAACAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTTGCAGAAACCTTAACTGAGCGTGTCGAATCAACTGTTGGAGTGGTTTTGAGTGAGATTGGTAGGCTGCAAGCTGAACGACAACAACAAATTATTGATTTCCAGGAGGAGGTTATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGAACGTGATGCCAAAGAAGCACAAGGACCCATCTCCTCTTCGATAATATCGGCTACAATCGAAGTTACTTCTTCTCCAACTGCTTCGAGCAATGGACAACAACGCTCAAGTCCGAACGCATATTCAGAAACTGTGGTGAATCAAGATCCTCCTCGTGGTGATGAAGAGTAATCGTCTCTTGTCGATCTCTCTTGGTTATTATACACATCCAATGATTGCAACATGTAGTCTGATGATGATAAGTTAGTTATTTGGTCTTGAAATCATACAGAGATTGTCTTCTTAAGGTTCGTCTATTAGGTATCTTATGAGTTTCTTGGTGTTGAATAATTCAGACCGAACAACCAGTTACGATCGTTCGATGTGTATTAGTAAATCATCTATTTTCGTTCATTCGAGCAGACTGTAGTTGAATTATTTGGCTGATTTTCAGTGTATCTTTCATAGTTTGAGCTCGATTACTCGTGTATTGTAGTCATTGCATTTGATAGTGTGTTTTTAAATCTGTTTTTAGAATCTATGATCGAAATAGTGCGGATTCATAAAACAATATTTTCTAGAATGGTTGATTGGGTATTTGAATTCATAAAACTATTTTTTTATGTGAAAAG

Coding sequence (CDS)

ATGAGTAGCGGGGTTGCATCTTCAGTTTCCCCATCCCTTTTCTCGGGTGTACCCACTAAATCAAAGATTACCCATTGTTCATCTCCCTCTCTTGTTCGATTTCGATCCTCATCCACTTCCTCAAATCTCAAATTTCGACCGAGTGGGTCTCTCAGATTCATAGCCAGTTGCAGCTCCGGTGATGGTGACAACAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTTGCAGAAACCTTAACTGAGCGTGTCGAATCAACTGTTGGAGTGGTTTTGAGTGAGATTGGTAGGCTGCAAGCTGAACGACAACAACAAATTATTGATTTCCAGGAGGAGGTTATAGAAAGAGCTAAAAAGGCCAAGGAAAAAGCAGAACGTGATGCCAAAGAAGCACAAGGACCCATCTCCTCTTCGATAATATCGGCTACAATCGAAGTTACTTCTTCTCCAACTGCTTCGAGCAATGGACAACAACGCTCAAGTCCGAACGCATATTCAGAAACTGTGGTGAATCAAGATCCTCCTCGTGGTGATGAAGAGTAA

Protein sequence

MSSGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPSGSLRFIASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEVIERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPPRGDEE

Homology

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BLAST of Cp4.1LG12g11220 vs. Swiss-Prot
Match: Y4320_ARATH (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 1


Query: 10  SPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKF----------RPSGSLRFIASCS- 69
           SPS FS     S   + +SP     R+S   SN +F          R S SLR  ++CS 
Sbjct: 8   SPSSFS----LSNSYNQTSPHSFTLRNSR--SNFEFHRLRLDVESRRRSTSLR--SNCST 67

Query: 70  ----SGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEV 129
               SG+ +N++VLDAFFLGKA AE + ER+ESTVG VLS IG+ QAE+Q+Q+ + QEEV
Sbjct: 68  KGTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEV 127

Query: 130 IERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---V 182
           +ERAKKAKE+A R+  E QG ++S      + +T +P A       S+    S+T+   V
Sbjct: 128 LERAKKAKERAARETMEEQGLVASK----PVAITRNPDAVVVASVTSTSTVESKTIMVDV 185

[Close]

BLAST of Cp4.1LG12g11220 vs. TrEMBL
Match: A0A0A0K6Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 130/185 (70.27%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 1   MSSGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PSGSLRFI 60
           MSSGV SSVS S FS V TK KITH S PSL+ FRSSST SNLKFR      P+G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEV 120
           A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+G VLS IGRLQAE+Q+QI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180
           IERAKKAKEKA RD+KE QGP+SSS+IS  IEV SSPT+       SSP+A SE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTS-------SSPDADSESVVNQD 178

[Close]

BLAST of Cp4.1LG12g11220 vs. TrEMBL
Match: D7U3G3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.5e-22
Identity = 84/189 (44.44%), Postives = 110/189 (58.20%), Query Frame = 1


Query: 3   SGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPSGSLRF-IASCSS-- 62
           SGV++S  P+ FS        + C    L   +    S  +  R  G  R  +  C+S  
Sbjct: 2   SGVSASPPPTFFSLEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSST 61

Query: 63  -------GDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQE 122
                  GD D+R++LDAFFLGKA AE L ER+ESTVG  LS +GRLQAE+Q+Q+ DFQ+
Sbjct: 62  NPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQD 121

Query: 123 EVIERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSP---NAYSET 179
           EV+ERAK+AKEKA R+A EAQG I  S  +AT  VTS+ + +S     +SP   N  S  
Sbjct: 122 EVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSPR 181

[Close]

BLAST of Cp4.1LG12g11220 vs. TrEMBL
Match: V7AKC0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G014200g PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 1


Query: 9   VSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKF-RPSGSLRFIASCS--------- 68
           +SPS F+ + +K+ ++ C   S     SSS SS+++  R  GS      C+         
Sbjct: 5   LSPSAFTTL-SKTYVSFCPLFSNFSVPSSSKSSHIELPRKRGSQNTALRCNCSILPGGPG 64

Query: 69  SGDGD--NRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEVIE 128
           SGD D  NR++LDAFFLGKA AE L ER+ESTVG +LS +GRLQAE+Q+Q+ DFQE+V+E
Sbjct: 65  SGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAEQQKQVQDFQEDVLE 124

Query: 129 RAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPP 182
           RAK+AKEKA R+A EA+G IS S +   +      T S N +  +S      +V + D P
Sbjct: 125 RAKRAKEKAAREAMEARGLISKSAVETKV------TDSGNFKTSNSAIDPLTSVQSTDAP 182

[Close]

BLAST of Cp4.1LG12g11220 vs. TrEMBL
Match: A0A164Z4F4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 1


Query: 29  PSLVRFRSSSTSSNLKFRPSGSLRFIASCSSGDGDNRTVLDAFFLGKAFAETLTERVEST 88
           P L+   +SS+SS     P G        S G+ +N+TVLDAFFLGKA AETL ER+EST
Sbjct: 3   PRLILRCNSSSSSG----PGGP------SSPGENENKTVLDAFFLGKALAETLNERIEST 62

Query: 89  VGVVLSEIGRLQAERQQQIIDFQEEVIERAKKAKEKAERDAKEAQG--PISSSIISATIE 148
           VG +LS IGRLQAE+Q+Q+ DFQEEV+ERAK++K+KA ++A E QG  P SS+I ++TI+
Sbjct: 63  VGEILSTIGRLQAEQQKQVEDFQEEVLERAKRSKDKAAKEALEVQGLIPKSSAIEASTID 114

[Close]

BLAST of Cp4.1LG12g11220 vs. TrEMBL
Match: T2DNE3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 1


Query: 9   VSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKF-RPSGSLRFIASCS--------- 68
           +SPS F+ + +K+ ++ C   S     SSS SS+++  R  GS      C+         
Sbjct: 5   LSPSAFTTL-SKTYVSFCPLFSNFSVPSSSKSSHIELPRKRGSQNTALRCNCSILPGGPG 64

Query: 69  SGDGD--NRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEVIE 128
           SGD D  NR++LDAFFLGKA AE L ER+ESTVG +LS +GRLQAE+Q+Q+ DFQE+V+E
Sbjct: 65  SGDSDSSNRSILDAFFLGKAVAEALNERIESTVGEILSTVGRLQAEQQKQVQDFQEDVLE 124

Query: 129 RAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQDPP 182
           RAK+AKEKA R+A EA+G IS S +   +      T S N +  +S      +V + D P
Sbjct: 125 RAKRAKEKAAREAMEARGLISKSAVETKV------TDSGNFKISNSAIDPLTSVQSTDAP 182

[Close]

BLAST of Cp4.1LG12g11220 vs. TAIR10
Match: AT4G13200.1 (AT4G13200.1 unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 1


Query: 10  SPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKF----------RPSGSLRFIASCS- 69
           SPS FS     S   + +SP     R+S   SN +F          R S SLR  ++CS 
Sbjct: 8   SPSSFS----LSNSYNQTSPHSFTLRNSR--SNFEFHRLRLDVESRRRSTSLR--SNCST 67

Query: 70  ----SGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEV 129
               SG+ +N++VLDAFFLGKA AE + ER+ESTVG VLS IG+ QAE+Q+Q+ + QEEV
Sbjct: 68  KGTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEV 127

Query: 130 IERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETV---V 182
           +ERAKKAKE+A R+  E QG ++S      + +T +P A       S+    S+T+   V
Sbjct: 128 LERAKKAKERAARETMEEQGLVASK----PVAITRNPDAVVVASVTSTSTVESKTIMVDV 185

[Close]

BLAST of Cp4.1LG12g11220 vs. NCBI nr
Match: gi|449443804|ref|XP_004139667.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 3.3e-52
Identity = 130/185 (70.27%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 1   MSSGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PSGSLRFI 60
           MSSGV SSVS S FS V TK KITH S PSL+ FRSSST SNLKFR      P+G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEV 120
           A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+G VLS IGRLQAE+Q+QI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180
           IERAKKAKEKA RD+KE QGP+SSS+IS  IEV SSPT+       SSP+A SE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPTS-------SSPDADSESVVNQD 178

[Close]

BLAST of Cp4.1LG12g11220 vs. NCBI nr
Match: gi|659092884|ref|XP_008447268.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 7.4e-52
Identity = 128/185 (69.19%), Postives = 148/185 (80.00%), Query Frame = 1


Query: 1   MSSGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFR------PSGSLRFI 60
           MSS + SSVS S FS VPTK KITH SSPSL+ FRSSST SNL+FR      P+GS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQEEV 120
           A CSSGDGD+RT+LDAFFLGKA AE LTER+EST+G VLS IG+LQAE+Q+QI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180
           IERAKKAKEKA R+AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQD 178

[Close]

BLAST of Cp4.1LG12g11220 vs. NCBI nr
Match: gi|1009149073|ref|XP_015892283.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 115.9 bits (289), Expect = 7.2e-23
Identity = 88/200 (44.00%), Postives = 117/200 (58.50%), Query Frame = 1


Query: 1   MSSGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPSGSLRFIAS---- 60
           M SGV++S S  +F  +P+K K TH  S S + F  +   S+LK +    +RF  +    
Sbjct: 1   MKSGVSASASSPIFPSLPSKPKTTHVFSASRLAFPRTLFWSDLKVQ---GVRFSTTKGLV 60

Query: 61  ---------CSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQI 120
                      SGD ++R+VLDAFFLGKA AE L ERVES VG +LS IGRLQ+E+Q+Q+
Sbjct: 61  CRSNSRPGDTGSGDSESRSVLDAFFLGKALAEALNERVESAVGELLSTIGRLQSEQQKQV 120

Query: 121 IDFQEEVIERAKKAKEKAERDAKEAQGPISSSIISAT---------IEVTSSPTASSNGQ 179
           +DFQEEV+ERAK+AKEKA R+A EAQG  +  + + T         + VTSSPT+     
Sbjct: 121 LDFQEEVLERAKRAKEKAAREALEAQGLTTKPVKANTTPRPNGAPLVSVTSSPTSDDFVP 180

[Close]

BLAST of Cp4.1LG12g11220 vs. NCBI nr
Match: gi|225464240|ref|XP_002267372.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera])

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 84/189 (44.44%), Postives = 110/189 (58.20%), Query Frame = 1


Query: 3   SGVASSVSPSLFSGVPTKSKITHCSSPSLVRFRSSSTSSNLKFRPSGSLRF-IASCSS-- 62
           SGV++S  P+ FS        + C    L   +    S  +  R  G  R  +  C+S  
Sbjct: 2   SGVSASPPPTFFSLEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSST 61

Query: 63  -------GDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRLQAERQQQIIDFQE 122
                  GD D+R++LDAFFLGKA AE L ER+ESTVG  LS +GRLQAE+Q+Q+ DFQ+
Sbjct: 62  NPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQD 121

Query: 123 EVIERAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSP---NAYSET 179
           EV+ERAK+AKEKA R+A EAQG I  S  +AT  VTS+ + +S     +SP   N  S  
Sbjct: 122 EVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSPR 181

[Close]

BLAST of Cp4.1LG12g11220 vs. NCBI nr
Match: gi|747072419|ref|XP_011083122.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic-like isoform X1 [Sesamum indicum])

HSP 1 Score: 109.4 bits (272), Expect = 6.7e-21
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1


Query: 40  SSNLKFRPSGSLRFIASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGVVLSEIGRL 99
           SS L+  PS SLR  ++  SG+ ++R+VLDAFFLGKA  E LTER+ESTVG +LS IG L
Sbjct: 36  SSGLRKSPSISLRCNSTGDSGENESRSVLDAFFLGKALGEALTERIESTVGEILSVIGSL 95

Query: 100 QAERQQQIIDFQEEVIERAKKAKEKAERDAKEAQGPISSSIISATIEVTS-SPTASSNGQ 159
           QAE+Q+QI++FQEEV+E+A++AKE+A RDA EAQG +S S       V S   T S+   
Sbjct: 96  QAEQQKQILEFQEEVLEKARRAKEQASRDAVEAQGLVSKSTALGVSTVNSVLETTSTVSD 155

Query: 160 QRSSPNAYSETVVNQDP 176
              S  + ++   N DP
Sbjct: 156 SVISAASSTQKPTNDDP 172

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g11220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4320_ARATH	3.1e-18	41.58	Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g...	[more]

BLAST of Cp4.1LG12g11220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Q2_CUCSA	2.3e-52	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1	[more]
D7U3G3_VITVI	9.5e-22	44.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=...	[more]
V7AKC0_PHAVU	1.8e-20	44.32	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G014200g PE=4 SV=1	[more]
A0A164Z4F4_DAUCA	2.3e-20	55.74	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1	[more]
T2DNE3_PHAVU	3.0e-20	44.32	Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1	[more]

BLAST of Cp4.1LG12g11220 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13200.1	1.8e-19	41.58	unknown protein	[more]

BLAST of Cp4.1LG12g11220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443804\|ref\|XP_004139667.1\|	3.3e-52	70.27	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]	[more]
gi\|659092884\|ref\|XP_008447268.1\|	7.4e-52	69.19	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo]	[more]
gi\|1009149073\|ref\|XP_015892283.1\|	7.2e-23	44.00	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba]	[more]
gi\|225464240\|ref\|XP_002267372.1\|	1.4e-21	44.44	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera]	[more]
gi\|747072419\|ref\|XP_011083122.1\|	6.7e-21	51.09	PREDICTED: uncharacterized protein At4g13200, chloroplastic-like isoform X1 [Ses...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g11220.1	Cp4.1LG12g11220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 101..135 scor
None	No IPR available	PANTHER	PTHR35745	FAMILY NOT NAMED	coord: 58..168 score: 1.7
None	No IPR available	PANTHER	PTHR35745:SF1	SUBFAMILY NOT NAMED	coord: 58..168 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g11220	Cucsa.078380	Cucumber (Gy14) v1	cgycpeB0132
Cp4.1LG12g11220	CmaCh17G012470	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g11220	CmaCh08G000680	Cucurbita maxima (Rimu)	cmacpeB899
Cp4.1LG12g11220	CmoCh08G000680	Cucurbita moschata (Rifu)	cmocpeB837
Cp4.1LG12g11220	CmoCh17G012270	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g11220	Cla014965	Watermelon (97103) v1	cpewmB135
Cp4.1LG12g11220	Csa7G337600	Cucumber (Chinese Long) v2	cpecuB157
Cp4.1LG12g11220	MELO3C012764	Melon (DHL92) v3.5.1	cpemeB127
Cp4.1LG12g11220	ClCG09G009110	Watermelon (Charleston Gray)	cpewcgB129
Cp4.1LG12g11220	CSPI07G14100	Wild cucumber (PI 183967)	cpecpiB159
Cp4.1LG12g11220	Lsi02G020730	Bottle gourd (USVL1VR-Ls)	cpelsiB111
Cp4.1LG12g11220	MELO3C012764.2	Melon (DHL92) v3.6.1	cpemedB155
Cp4.1LG12g11220	CsaV3_7G025830	Cucumber (Chinese Long) v3	cpecucB0182
Cp4.1LG12g11220	Bhi09G001148	Wax gourd	cpewgoB0204
Cp4.1LG12g11220	CsGy7G012720	Cucumber (Gy14) v2	cgybcpeB900
Cp4.1LG12g11220	Carg25537	Silver-seed gourd	carcpeB0597
Cp4.1LG12g11220	Carg04899	Silver-seed gourd	carcpeB0118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g11220	Cp4.1LG17g09740	Cucurbita pepo (Zucchini)	cpecpeB165

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g11220	Melon (DHL92) v3.5.1	cpemeB119
Cp4.1LG12g11220	Melon (DHL92) v3.6.1	cpemedB146
Cp4.1LG12g11220	Wax gourd	cpewgoB0209