CmaCh08G000680.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G000680.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Probable thylakoid lumen protein sll1769
Location	Cma_Chr08 : 372677 .. 375083 (+)
Sequence length	988

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCCACCCCCCAAGATCTTTCTTTATATGTTCCTGTTTGGCTGTCGAGAAATCGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTAAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTACTTTGAATCTTCGCCTACTCTGTTTTTGTTTTGTTTTCCTATATGTTCTTAGTTATTGGCGAATTTTACGAAGGTTTTAGTGGTGAAATCTGTTTTAATCTGCTATTGATTCTCCGATTTGAGGGCATTTCTGCGTTTTTCTTGATTTTTGTTTGCAGATTGAACACTTGTTTTGGATTTCATAAAAGAATGATCGGTTTTGGATTTCATATCTGATTATATGCCTACAAACTGTTTGATATATTGTCAATGGCTTTATTAAGTATGAAGTTCGCCTGATTTTATAAGATTAGTATCCATTTCCCCCTTAAGTAGGAATTTGTTCTCCTTGATCCTTTTTGTACTCTGAATTTGGATCAATTTATGAGATTTATCACGTTCTACAGGAGGAAATATTGCACTTATTTCCTTTTTTTGGTGAAGATTTGGAAGCTTAATGAATTTATGGGATGGTAATGATCTTAAGAACATGATATTGATCTTATTAGAAGAAAATTCTGTAGAATCACAGTGGAAACATAATCTTTTTGGTTTCTATGATCTTACAGTTTCGTTACTGTTATCAAGCATTCAACGAGCTAGCTGTATGATGCAGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGTAAGATGCTCCAAAGTTAATGATAGAACTTCCTAACTTTGTTTTTAATTTACTTTCCCTTTTACATGATAAAAGGGTTGACCAACTAATGAACTTAAAATCCGATGTCCTATGAGCTATCTCGACAACTAAACTTAGTCGAGTCTAAGAGGTTGTCTTGTGAGAGTTGTCGAGGAATGGATATCAAAAGAGAAAACGACACTGCATTGTGGTCTCTTGTACTGTGGATTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAGCAAAATAAGACAACTGTGAGATCTCACATTGGATGGGGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAACGCGTTTTGAAGACCTCGAGGGGAAACTCGAAGGGAAAACCTAAAGAGGACAATATCTGCTAGTGGTGGGTTTAAACTGTAACCATTGAAAATCTACGGTAGGTTAAAGCTTTTTGAGTGGAGCTGTAGGTTAGGCCTGGATTGAAGCTTTTACTTAGAAACCATGATGCCTGGCTTAAAATTGCTGTGGCTCTAGCATCTTTCTTATTCATTTCGAGTGTTTTTAGGCTAAAATTCATGGTTCGGGGCTCAGCTTTCGATTTAGTTTCGATGTGATGAGATTGGAAGTTTGAGATTAAAATTGACCGAGTAGAGTATGAAGAGTAAAAGCAAAGAAAATTCCCTTATGCATGCATTATTGTTCTCTTAAGAACATTTTAAATTTCCTCTGAAACTAGATTGAAGTGAATGAAGCTCAATATTGCTGAAAATGGCATATTCATACTGGAAACAAACTTTGTACAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTTTATATAGAAGACTTATAGTGAATGTAGCCTTTATATACTGATGATGGGTTGGGTTGGTTATTTAGTCTCAAAGTCATATAGTAATTGCCTTTTAAGATTCGTCTTTCAGAGATATCTTATGAGATTCTAGATATCTTATGAGATTCTTGACGCGATCGAACACAACCCATTTAGTAATATTATTATTTGAAATTTTGAATATAGGAACGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTTGTACTTGATCAAGTAGGGAGCTAAGAAACTTCTCGAAGAAAAATAAATGTCTATCCAA

mRNA sequence

TTCCCCACCCCCCAAGATCTTTCTTTATATGTTCCTGTTTGGCTGTCGAGAAATCGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTAAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTTTATATAGAAGACTTATAGTGAATGTAGCCTTTATATACTGATGATGGGTTGGGTTGGTTATTTAGTCTCAAAGTCATATAGTAATTGCCTTTTAAGATTCGTCTTTCAGAGATATCTTATGAGATTCTAGATATCTTATGAGATTCTTGACGCGATCGAACACAACCCATTTAGTAATATTATTATTTGAAATTTTGAATATAGGAACGAGTTAAAAATGACTGTTATAGTCAATTTAATATGCCTACATTTTTTGTACTTGATCAAGTAGGGAGCTAAGAAACTTCTCGAAGAAAAATAAATGTCTATCCAA

Coding sequence (CDS)

ATGACTAGTGGGGTTACACCTTCAGTTTCCCCATCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACCTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGACGACAGCAGGACTGTTCTAAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAAATTCTTGATTTCCAAGAGGAGGTGATAGAAAGAGCCAAAAAAGCCCAGGAAAAAGCCGCACGTGATGCCAAAGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCTACTACTTCGACCAACCAACAACAACTCTCGAATCCCAGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGCGACGAAGAGTAA

Protein sequence

MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFVVRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPNQDPPLGDEE

Homology

[Close]

BLAST of CmaCh08G000680.1 vs. Swiss-Prot
Match: Y4320_ARATH (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=2 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-21
Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 10  SPSHFSILHSKPK-----ITHLSSPSNLKFRPI-----SPIGSPRFVVRCS-----SGDD 69
           SPS FS+ +S  +      T  +S SN +F  +     S   S      CS     SG++
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSP-TIEVASSSTTST 150
           E+AAR+  E QG ++S   +  R+P  + VAS ++TST
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTST 165

[Close]

BLAST of CmaCh08G000680.1 vs. TrEMBL
Match: A0A0A0K6Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-48
Identity = 125/187 (66.84%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLS-----------SPSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH S           +PSNLKFR IS   P G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVLSGIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAARDSKEVQGPV--SSSVISPKIEVFSSPTS-------SSPDADSESVVN 178

[Close]

BLAST of CmaCh08G000680.1 vs. TrEMBL
Match: D7U3G3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 1


Query: 3   SGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPI--SPIG--------SPRFVVRCSS- 62
           SGV+ S  P+ FS L  +PK         L  R +  + +G            VV+C+S 
Sbjct: 2   SGVSASPPPTFFS-LEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSS 61

Query: 63  --------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQ 122
                   GD DSR++L+AFFLGKALAEAL ER+EST+GE LS +GRLQAEQQKQ+ DFQ
Sbjct: 62  TNPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQ 121

Query: 123 EEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST---TSTNQQQLSNPSSD 173
           +EV+ERAK+A+EKAAR+A E QG I  S++  + ++   +S+T   T  N   LSNP+S 
Sbjct: 122 DEVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSP 181

[Close]

BLAST of CmaCh08G000680.1 vs. TrEMBL
Match: M5VKL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011364mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 93/208 (44.71%), Postives = 120/208 (57.69%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKIT-----------HLSSPSNLKFRPISPIG---SPRFV 60
           M SGV  S SP     L SKP+ +           H    S+LK R     G   S R  
Sbjct: 1   MISGVLASASPQAVCSLLSKPRTSCCCYASSSVSGHKPCSSDLKLRSFGLFGTKGSQRSR 60

Query: 61  VRCSS------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL 120
           V+CSS      GD DSR+VL+AFFLGKALAEA+ ER+ES++GE LS IGRLQAEQQKQ+ 
Sbjct: 61  VQCSSSSGPGSGDGDSRSVLDAFFLGKALAEAINERIESSVGEFLSTIGRLQAEQQKQVE 120

Query: 121 DFQEEVIERAKKAQEKAARDAKEVQG-----------PISSSSSIR--SPTIEVASSSTT 176
           +FQE+V+ERAK+A+EKAAR+A EVQG           P+  ++ +   + T    +S+ T
Sbjct: 121 EFQEDVLERAKRAKEKAAREAAEVQGLAKPPTAEYITPVKITNGVTQVTSTTTTTTSNVT 180

[Close]

BLAST of CmaCh08G000680.1 vs. TrEMBL
Match: A0A164Z4F4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 69/140 (49.29%), Postives = 96/140 (68.57%), Query Frame = 1


Query: 43  PRFVVRCSS------------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGR 102
           PR ++RC+S            G+++++TVL+AFFLGKALAE L ER+EST+GE+LS IGR
Sbjct: 3   PRLILRCNSSSSSGPGGPSSPGENENKTVLDAFFLGKALAETLNERIESTVGEILSTIGR 62

Query: 103 LQAEQQKQILDFQEEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTN 162
           LQAEQQKQ+ DFQEEV+ERAK++++KAA++A EVQG I  SS+I + TI+    S   T 
Sbjct: 63  LQAEQQKQVEDFQEEVLERAKRSKDKAAKEALEVQGLIPKSSAIEASTIDSTVPSVNETQ 122

Query: 163 QQQLSNPSSDSGTAPNQDPP 171
              +++      + P  D P
Sbjct: 123 SIVITDEDPKPTSTPTPDVP 142

[Close]

BLAST of CmaCh08G000680.1 vs. TrEMBL
Match: A0A061DVB5_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002978 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 51  SGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERA 110
           SGD++SR VL+AFFLGKALAEAL ER+ESTIGE L  +GRLQAEQQKQ+ DFQEEV+ERA
Sbjct: 74  SGDNESRNVLDAFFLGKALAEALNERIESTIGEFLGAVGRLQAEQQKQVQDFQEEVLERA 133

Query: 111 KKAQEKAARDAKEVQGPISSSSSIRSPTIE--VASSSTTSTNQQQLSNPSS 160
           K+A+EKAAR+A E QG I  S+++ + ++    AS+++  T + ++S  SS
Sbjct: 134 KRAKEKAAREAMEAQGLIPKSTAVNATSVTNGAASNASPPTAKDRISGKSS 184

[Close]

BLAST of CmaCh08G000680.1 vs. TAIR10
Match: AT4G13200.1 (AT4G13200.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-22
Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 10  SPSHFSILHSKPK-----ITHLSSPSNLKFRPI-----SPIGSPRFVVRCS-----SGDD 69
           SPS FS+ +S  +      T  +S SN +F  +     S   S      CS     SG++
Sbjct: 8   SPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKGTDSGEN 67

Query: 70  DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAQ 129
           ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAEQQKQ+ + QEEV+ERAKKA+
Sbjct: 68  ENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAK 127

Query: 130 EKAARDAKEVQGPISSS--SSIRSP-TIEVASSSTTST 150
           E+AAR+  E QG ++S   +  R+P  + VAS ++TST
Sbjct: 128 ERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTST 165

[Close]

BLAST of CmaCh08G000680.1 vs. NCBI nr
Match: gi|449443804|ref|XP_004139667.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-48
Identity = 125/187 (66.84%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLS-----------SPSNLKFRPIS---PIGSPRFV 60
           M+SGVT SVS S FS++ +KPKITH S           +PSNLKFR IS   P G  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVLSGIGRLQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAARDSKEVQGPV--SSSVISPKIEVFSSPTS-------SSPDADSESVVN 178

[Close]

BLAST of CmaCh08G000680.1 vs. NCBI nr
Match: gi|659092884|ref|XP_008447268.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.8e-47
Identity = 123/187 (65.78%), Postives = 144/187 (77.01%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPS-----------NLKFRPIS---PIGSPRFV 60
           M+S +T SVS S FS++ +KPKITH SSPS           NL+FR IS   P GS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120
            RCSSGD DSRT+L+AFFLGKALAEALTER+ESTIGEVLSGIG+LQAEQQKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 174
           IERAKKA+EKAAR+AKEVQ P+  SSS+ SPTIEV+SS T+       S+P +DS +  N
Sbjct: 121 IERAKKAKEKAAREAKEVQRPV--SSSVISPTIEVSSSPTS-------SSPDADSESGVN 178

[Close]

BLAST of CmaCh08G000680.1 vs. NCBI nr
Match: gi|1009149073|ref|XP_015892283.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 124.0 bits (310), Expect = 2.6e-25
Identity = 99/201 (49.25%), Postives = 122/201 (60.70%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPISPIGSPRFV--VRCS-------- 60
           M SGV+ S S   F  L SKPK TH+ S S L F P +   S   V  VR S        
Sbjct: 1   MKSGVSASASSPIFPSLPSKPKTTHVFSASRLAF-PRTLFWSDLKVQGVRFSTTKGLVCR 60

Query: 61  ---------SGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILD 120
                    SGD +SR+VL+AFFLGKALAEAL ERVES +GE+LS IGRLQ+EQQKQ+LD
Sbjct: 61  SNSRPGDTGSGDSESRSVLDAFFLGKALAEALNERVESAVGELLSTIGRLQSEQQKQVLD 120

Query: 121 FQEEVIERAKKAQEKAARDAKEVQG----PISSSSSIR---SPTIEVASSSTTSTNQQQL 173
           FQEEV+ERAK+A+EKAAR+A E QG    P+ ++++ R   +P + V SS T+       
Sbjct: 121 FQEEVLERAKRAKEKAAREALEAQGLTTKPVKANTTPRPNGAPLVSVTSSPTSDD----- 180

[Close]

BLAST of CmaCh08G000680.1 vs. NCBI nr
Match: gi|225464240|ref|XP_002267372.1| (PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera])

HSP 1 Score: 123.6 bits (309), Expect = 3.3e-25
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 1


Query: 3   SGVTPSVSPSHFSILHSKPKITHLSSPSNLKFRPI--SPIG--------SPRFVVRCSS- 62
           SGV+ S  P+ FS L  +PK         L  R +  + +G            VV+C+S 
Sbjct: 2   SGVSASPPPTFFS-LEGRPKTRSFCCHQPLSHRKLRFNSLGIGCRGGGLQRDRVVQCNSS 61

Query: 63  --------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQ 122
                   GD DSR++L+AFFLGKALAEAL ER+EST+GE LS +GRLQAEQQKQ+ DFQ
Sbjct: 62  TNPPPPGSGDSDSRSILDAFFLGKALAEALNERIESTVGEFLSVVGRLQAEQQKQVQDFQ 121

Query: 123 EEVIERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST---TSTNQQQLSNPSSD 173
           +EV+ERAK+A+EKAAR+A E QG I  S++  + ++   +S+T   T  N   LSNP+S 
Sbjct: 122 DEVLERAKRAKEKAAREALEAQGLIPKSTTAATDSVTSTASTTSAETPANSPLLSNPNSP 181

[Close]

BLAST of CmaCh08G000680.1 vs. NCBI nr
Match: gi|595793473|ref|XP_007200485.1| (hypothetical protein PRUPE_ppa011364mg [Prunus persica])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 93/208 (44.71%), Postives = 120/208 (57.69%), Query Frame = 1


Query: 1   MTSGVTPSVSPSHFSILHSKPKIT-----------HLSSPSNLKFRPISPIG---SPRFV 60
           M SGV  S SP     L SKP+ +           H    S+LK R     G   S R  
Sbjct: 1   MISGVLASASPQAVCSLLSKPRTSCCCYASSSVSGHKPCSSDLKLRSFGLFGTKGSQRSR 60

Query: 61  VRCSS------GDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQIL 120
           V+CSS      GD DSR+VL+AFFLGKALAEA+ ER+ES++GE LS IGRLQAEQQKQ+ 
Sbjct: 61  VQCSSSSGPGSGDGDSRSVLDAFFLGKALAEAINERIESSVGEFLSTIGRLQAEQQKQVE 120

Query: 121 DFQEEVIERAKKAQEKAARDAKEVQG-----------PISSSSSIR--SPTIEVASSSTT 176
           +FQE+V+ERAK+A+EKAAR+A EVQG           P+  ++ +   + T    +S+ T
Sbjct: 121 EFQEDVLERAKRAKEKAAREAAEVQGLAKPPTAEYITPVKITNGVTQVTSTTTTTTSNVT 180

The following BLAST results are available for this feature:

BLAST of CmaCh08G000680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4320_ARATH	3.8e-21	46.84	Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g...	[more]

BLAST of CmaCh08G000680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Q2_CUCSA	2.6e-48	66.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337600 PE=4 SV=1	[more]
D7U3G3_VITVI	2.3e-25	46.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g05850 PE=4 SV=...	[more]
M5VKL4_PRUPE	1.5e-24	44.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011364mg PE=4 SV=1	[more]
A0A164Z4F4_DAUCA	3.7e-23	49.29	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018555 PE=4 SV=1	[more]
A0A061DVB5_THECC	1.1e-22	59.46	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_002978 PE=4 SV=1	[more]

BLAST of CmaCh08G000680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G13200.1	2.2e-22	46.84	unknown protein	[more]

BLAST of CmaCh08G000680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443804\|ref\|XP_004139667.1\|	3.7e-48	66.84	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]	[more]
gi\|659092884\|ref\|XP_008447268.1\|	1.8e-47	65.78	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Cucumis melo]	[more]
gi\|1009149073\|ref\|XP_015892283.1\|	2.6e-25	49.25	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Ziziphus jujuba]	[more]
gi\|225464240\|ref\|XP_002267372.1\|	3.3e-25	46.88	PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera]	[more]
gi\|595793473\|ref\|XP_007200485.1\|	2.2e-24	44.71	hypothetical protein PRUPE_ppa011364mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh08G000680	CmaCh08G000680	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh08G000680.1	CmaCh08G000680.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G000680.1.exon.3	CmaCh08G000680.1.exon.3	exon
CmaCh08G000680.1.exon.2	CmaCh08G000680.1.exon.2	exon
CmaCh08G000680.1.exon.1	CmaCh08G000680.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G000680.1.five_prime_UTR.1	CmaCh08G000680.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G000680.1.CDS.1	CmaCh08G000680.1.CDS.1	CDS
CmaCh08G000680.1.CDS.2	CmaCh08G000680.1.CDS.2	CDS
CmaCh08G000680.1.CDS.3	CmaCh08G000680.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh08G000680.1.three_prime_UTR.1	CmaCh08G000680.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 93..120 scor
None	No IPR available	PANTHER	PTHR35745	FAMILY NOT NAMED	coord: 50..168 score: 2.0
None	No IPR available	PANTHER	PTHR35745:SF1	SUBFAMILY NOT NAMED	coord: 50..168 score: 2.0