CmaCh07G002700 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G002700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_4
LocationCma_Chr07 : 1201694 .. 1202761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAACCTTCACTCCCGCCGCCGAATTTTTCCTCAGTCATAGATGGGCGGTTCCAGAAGCGACGACATCAGCGGCGCCACCTACTCTCCCCGGAGTTCTGGCCGTCCGATTCCCAAGAGGGGACAGGTCAAATTGGGGATTATGGTGGGTCTCGCTCATTCCGTTGTTTCAATTTTCTCGCCAACCACTCGCCGGAGTTAGATTCCACGGCGGCAAGCGATGGGTGTCGGAGAGAGGGCATGGAGAGCTGTTTTTGGTTCCGGTTGTAAATTTTTGGCTAATATTTTATTTATGACATCTCAAAACAATACATTGAACCCAACATGTCTCTTTCAAATTTGCAGCCTGAGATTATTCATTTCAATTCTTTTCTTTAAAACGTATCATTATTATGATTTATAAATATGAAACAGGGAGACAACCAAATGAATCTATTGATAAAAAGCGCTCAGGAGTGGGTCAGCCTCAAGTTTTAGATGCCCTATTGGCATTTTCCCTTTCCTAGTGGAAGCCATGCAAAGCACGTTTCTTCATAATAAATATATTTTTTAAAAATAAAATTAAAAAAAGTGAGATACTGAATTCAAGCTGACGTCATCTATGGACTAAGCCACGACGTCAGCTCTTCTTCTAAAGTGAAAAGGTCAAATTTGTAATTAGCCAGAGAGGAGTGGGATCAAAACTCAAAAACCCTTTCATTAAAAAGCAACAAGAGGCACTAGTTAGGCAGGGTTAAAATGGTCAACTTACACCCCATTACCGTCATCTAGCCTTCTGGTTCTTGCCCATTTTTTCTTATATATATATATCTTTGAAGTCGGGACAGATTCGAAGCAATAGAGGCACCGTCTTCAAAAAACAAATATCGCTTACTCTCTTTCTCTCTCTAAATCAAGAACTTTCAGTTGCAGAGATGGCCGGTACCAGGATCAACGCGATCAACGGTGGACACTTGTCGAGTAAATATTCTGACCGTTTGATTCCGAAACGGGGTCAGGTCAAAATGGCTATCTTAGCGGGTATTGCTCACTCCGTCTCTTCGATCTTCTCTCACGGCGGTCGGAAATAA

mRNA sequence

GTAACCTTCACTCCCGCCGCCGAATTTTTCCTCAGTCATAGATGGGCGGTTCCAGAAGCGACGACATCAGCGGCGCCACCTACTCTCCCCGGAGTTCTGGCCGTCCGATTCCCAAGAGGGGACAGGTCAAATTGGGGATTATGGTGGGTCTCGCTCATTCCGTTGTTTCAATTTTCTCGCCAACCACTCGCCGGAGTTAGATTCCACGGCGGCAAGCGATGGGTGTCGGAGAGAGGGCATGGAGAGCTGTTTTTGGTTCCGGTTTCGGGACAGATTCGAAGCAATAGAGGCACCGTCTTCAAAAAACAAATATCGCTTACTCTCTTTCTCTCTCTAAATCAAGAACTTTCAGTTGCAGAGATGGCCGGTACCAGGATCAACGCGATCAACGGTGGACACTTGTCGAGTAAATATTCTGACCGTTTGATTCCGAAACGGGGTCAGGTCAAAATGGCTATCTTAGCGGGTATTGCTCACTCCGTCTCTTCGATCTTCTCTCACGGCGGTCGGAAATAA

Coding sequence (CDS)

GTAACCTTCACTCCCGCCGCCGAATTTTTCCTCAGTCATAGATGGGCGGTTCCAGAAGCGACGACATCAGCGGCGCCACCTACTCTCCCCGGAGTTCTGGCCGTCCGATTCCCAAGAGGGGACAGGTCAAATTGGGGATTATGGTGGGTCTCGCTCATTCCGTTGTTTCAATTTTCTCGCCAACCACTCGCCGGAGTTAGATTCCACGGCGGCAAGCGATGGGTGTCGGAGAGAGGGCATGGAGAGCTGTTTTTGGTTCCGGTTTCGGGACAGATTCGAAGCAATAGAGGCACCGTCTTCAAAAAACAAATATCGCTTACTCTCTTTCTCTCTCTAAATCAAGAACTTTCAGTTGCAGAGATGGCCGGTACCAGGATCAACGCGATCAACGGTGGACACTTGTCGAGTAAATATTCTGACCGTTTGATTCCGAAACGGGGTCAGGTCAAAATGGCTATCTTAGCGGGTATTGCTCACTCCGTCTCTTCGATCTTCTCTCACGGCGGTCGGAAATAA

Protein sequence

VTFTPAAEFFLSHRWAVPEATTSAAPPTLPGVLAVRFPRGDRSNWGLWWVSLIPLFQFSRQPLAGVRFHGGKRWVSERGHGELFLVPVSGQIRSNRGTVFKKQISLTLFLSLNQELSVAEMAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK
Homology
[Close]
BLAST of CmaCh07G002700 vs. TrEMBL
Match: A0A0A0KLE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517000 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAGTRINAIN G+LS K SDRLIPKRGQVK+ I+ GIAHSV+SIFSHG RK
Sbjct: 1   MAGTRINAINHGNLSRKCSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 51

[Close]
BLAST of CmaCh07G002700 vs. TrEMBL
Match: F6GYY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00060 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAG R   INGG+ S ++S R IPKRGQVK+ I+ G+AHSV+SIFS GGR+
Sbjct: 1   MAGGRRAMINGGNFSQRFSGRPIPKRGQVKVGIVVGLAHSVASIFSLGGRR 51

[Close]
BLAST of CmaCh07G002700 vs. TrEMBL
Match: F6GYY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00070 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAG R + INGG  S ++S R IPKRGQVK+AI  G AHSV+SIFS GGR+
Sbjct: 1   MAGGRGDMINGGSFSQRFSGRPIPKRGQVKVAIAVGFAHSVASIFSLGGRR 51

[Close]
BLAST of CmaCh07G002700 vs. TrEMBL
Match: A0A0D2T9Z2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G172100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAG R   INGG+ S + + R IP+RGQVK+AIL GIAHS +SIFS   R+
Sbjct: 1   MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]
BLAST of CmaCh07G002700 vs. TrEMBL
Match: A0A067G885_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041404mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYS-----DRLIPKRGQVKMAILAGIAHSVSSIFSH 168
           MA  R   INGG++S + +      RLIPKRGQVK+AIL G+AHSV+SIFSH
Sbjct: 1   MAYARRGMINGGNISQRLTAGGGTGRLIPKRGQVKLAILVGLAHSVASIFSH 52

[Close]
BLAST of CmaCh07G002700 vs. NCBI nr
Match: gi|700193988|gb|KGN49192.1| (hypothetical protein Csa_6G517000 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAGTRINAIN G+LS K SDRLIPKRGQVK+ I+ GIAHSV+SIFSHG RK
Sbjct: 1   MAGTRINAINHGNLSRKCSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 51

[Close]
BLAST of CmaCh07G002700 vs. NCBI nr
Match: gi|763786428|gb|KJB53424.1| (hypothetical protein B456_009G172100 [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYSDRLIPKRGQVKMAILAGIAHSVSSIFSHGGRK 172
           MAG R   INGG+ S + + R IP+RGQVK+AIL GIAHS +SIFS   R+
Sbjct: 1   MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]
BLAST of CmaCh07G002700 vs. NCBI nr
Match: gi|641857023|gb|KDO75789.1| (hypothetical protein CISIN_1g041404mg [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1 

Query: 121 MAGTRINAINGGHLSSKYS-----DRLIPKRGQVKMAILAGIAHSVSSIFSH 168
           MA  R   INGG++S + +      RLIPKRGQVK+AIL G+AHSV+SIFSH
Sbjct: 1   MAYARRGMINGGNISQRLTAGGGTGRLIPKRGQVKLAILVGLAHSVASIFSH 52

The following BLAST results are available for this feature:
BLAST of CmaCh07G002700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G002700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLE0_CUCSA1.2e-1380.39Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517000 PE=4 SV=1[more]
F6GYY0_VITVI2.5e-0862.75Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00060 PE=4 SV=... [more]
F6GYY1_VITVI2.5e-0864.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00070 PE=4 SV=... [more]
A0A0D2T9Z2_GOSRA2.4e-0658.82Uncharacterized protein OS=Gossypium raimondii GN=B456_009G172100 PE=4 SV=1[more]
A0A067G885_CITSI5.3e-0659.62Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041404mg PE=4 SV=1[more]
BLAST of CmaCh07G002700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G002700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193988|gb|KGN49192.1|1.7e-1380.39hypothetical protein Csa_6G517000 [Cucumis sativus][more]
gi|763786428|gb|KJB53424.1|3.4e-0658.82hypothetical protein B456_009G172100 [Gossypium raimondii][more]
gi|641857023|gb|KDO75789.1|7.6e-0659.62hypothetical protein CISIN_1g041404mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G002700.1CmaCh07G002700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615FAMILY NOT NAMEDcoord: 121..170
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G002700Cucsa.045910Cucumber (Gy14) v1cgycmaB0048
CmaCh07G002700Csa6G517000Cucumber (Chinese Long) v2cmacuB877
CmaCh07G002700ClCG01G022590Watermelon (Charleston Gray)cmawcgB754
CmaCh07G002700CSPI06G34280Wild cucumber (PI 183967)cmacpiB893
CmaCh07G002700Cp4.1LG10g09200Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G002700MELO3C007317.2Melon (DHL92) v3.6.1cmamedB897
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G002700CmaCh03G004810Cucurbita maxima (Rimu)cmacmaB523
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G002700Melon (DHL92) v3.5.1cmameB782
CmaCh07G002700Melon (DHL92) v3.5.1cmameB798
CmaCh07G002700Watermelon (Charleston Gray)cmawcgB760
CmaCh07G002700Watermelon (97103) v1cmawmB826
CmaCh07G002700Watermelon (97103) v1cmawmB820
CmaCh07G002700Cucurbita pepo (Zucchini)cmacpeB859
CmaCh07G002700Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G002700Cucurbita pepo (Zucchini)cmacpeB881
CmaCh07G002700Cucurbita pepo (Zucchini)cmacpeB887
CmaCh07G002700Bottle gourd (USVL1VR-Ls)cmalsiB785
CmaCh07G002700Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G002700Bottle gourd (USVL1VR-Ls)cmalsiB796
CmaCh07G002700Cucumber (Gy14) v2cgybcmaB142
CmaCh07G002700Silver-seed gourdcarcmaB1300
CmaCh07G002700Cucumber (Gy14) v2cgybcmaB861
CmaCh07G002700Melon (DHL92) v3.6.1cmamedB883
CmaCh07G002700Melon (DHL92) v3.6.1cmamedB884
CmaCh07G002700Silver-seed gourdcarcmaB0201
CmaCh07G002700Silver-seed gourdcarcmaB0914
CmaCh07G002700Silver-seed gourdcarcmaB1218
CmaCh07G002700Silver-seed gourdcarcmaB1279
CmaCh07G002700Cucumber (Chinese Long) v3cmacucB1005
CmaCh07G002700Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G002700Cucumber (Chinese Long) v3cmacucB1040
CmaCh07G002700Watermelon (97103) v2cmawmbB875
CmaCh07G002700Watermelon (97103) v2cmawmbB883
CmaCh07G002700Watermelon (97103) v2cmawmbB888
CmaCh07G002700Wax gourdcmawgoB1058
CmaCh07G002700Wax gourdcmawgoB1081
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB069
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB172
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB238
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB413
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB439
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB464
CmaCh07G002700Cucurbita maxima (Rimu)cmacmaB508
CmaCh07G002700Cucumber (Gy14) v1cgycmaB0341
CmaCh07G002700Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G002700Cucurbita moschata (Rifu)cmacmoB847
CmaCh07G002700Cucurbita moschata (Rifu)cmacmoB849
CmaCh07G002700Cucurbita moschata (Rifu)cmacmoB854
CmaCh07G002700Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G002700Wild cucumber (PI 183967)cmacpiB865
CmaCh07G002700Cucumber (Chinese Long) v2cmacuB848