CSPI06G34280 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G34280
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 28200288 .. 28200933 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCAGTTAGGCAGGGTCAAGATCGTCAACTTCTACTACGGCCTTTCCCTCATCTTAACCTTCTCATTTTATATATATATATATACCAATTACCAACAAGCTCTAACCATAACTTCAACAATCATCTTCTTCTTCTCTCTCTCACTATTTCAGAAGCTCAGATGGCGGGTACACGGATCAACGCAATCAACCATGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGACTGTGGTGGCCGAGGAAGAGAACGGGTTCAGTTAATTGGGATCGTTGAGTTGGTTTTTTTTTTAAATCGACGGTCCTGATTTTCCGAGAGTGAGCGGTTCAAATTTTATCGAACGTCACAGATTTAGACGCTGAGATCTTCCGAATTGTTAATTGAAAGATGAGGAAGAACCCGAGGTGGCCTTTTTTGTGTATGTGTGTGTAACTTTTTTTCTTTTTTTTTCTTGTTTTAAAGAAGTTGTTCATTTTATGGTTTGTGATGGTGTCTGTAAATTAGCAAAATTGCTTAATTTACTGTAAAATAATCATAATAATAATTTACTTTCCTGA

mRNA sequence

ATGGCGGGTACACGGATCAACGCAATCAACCATGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGA

Coding sequence (CDS)

ATGGCGGGTACACGGATCAACGCAATCAACCATGGAAATTTGTCGAGGAAATATTCGGACCGTCTGATTCCAAAACGGGGTCAAGTGAAATTGGGAATCATAGTGGGTATTGCTCACTCAGTGACTTCGATATTCTCTCACGGCAGCCGGAAATGA

Homology

[Close]

BLAST of CSPI06G34280 vs. TrEMBL
Match: A0A0A0KLE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517000 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAGTRINAINHGNLSRK SDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK
Sbjct: 1  MAGTRINAINHGNLSRKCSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 51

[Close]

BLAST of CSPI06G34280 vs. TrEMBL
Match: F6GYY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00060 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-09
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAG R   IN GN S+++S R IPKRGQVK+GI+VG+AHSV SIFS G R+
Sbjct: 1  MAGGRRAMINGGNFSQRFSGRPIPKRGQVKVGIVVGLAHSVASIFSLGGRR 51

[Close]

BLAST of CSPI06G34280 vs. TrEMBL
Match: F6GYY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00070 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAG R + IN G+ S+++S R IPKRGQVK+ I VG AHSV SIFS G R+
Sbjct: 1  MAGGRGDMINGGSFSQRFSGRPIPKRGQVKVAIAVGFAHSVASIFSLGGRR 51

[Close]

BLAST of CSPI06G34280 vs. TrEMBL
Match: A0A0D2T9Z2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G172100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-07
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAG R   IN GN S + + R IP+RGQVK+ I++GIAHS  SIFS  SR+
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]

BLAST of CSPI06G34280 vs. TrEMBL
Match: A0A067G885_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041404mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-06
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYS-----DRLIPKRGQVKLGIIVGIAHSVTSIFSH 48
          MA  R   IN GN+S++ +      RLIPKRGQVKL I+VG+AHSV SIFSH
Sbjct: 1  MAYARRGMINGGNISQRLTAGGGTGRLIPKRGQVKLAILVGLAHSVASIFSH 52

[Close]

BLAST of CSPI06G34280 vs. NCBI nr
Match: gi|700193988|gb|KGN49192.1| (hypothetical protein Csa_6G517000 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAGTRINAINHGNLSRK SDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK
Sbjct: 1  MAGTRINAINHGNLSRKCSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 51

[Close]

BLAST of CSPI06G34280 vs. NCBI nr
Match: gi|763786428|gb|KJB53424.1| (hypothetical protein B456_009G172100 [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSHGSRK 52
          MAG R   IN GN S + + R IP+RGQVK+ I++GIAHS  SIFS  SR+
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

[Close]

BLAST of CSPI06G34280 vs. NCBI nr
Match: gi|641857023|gb|KDO75789.1| (hypothetical protein CISIN_1g041404mg [Citrus sinensis])

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-06
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYS-----DRLIPKRGQVKLGIIVGIAHSVTSIFSH 48
          MA  R   IN GN+S++ +      RLIPKRGQVKL I+VG+AHSV SIFSH
Sbjct: 1  MAYARRGMINGGNISQRLTAGGGTGRLIPKRGQVKLAILVGLAHSVASIFSH 52

[Close]

BLAST of CSPI06G34280 vs. NCBI nr
Match: gi|629109506|gb|KCW74652.1| (hypothetical protein EUGRSUZ_E03374 [Eucalyptus grandis])

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-06
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFS 47
          M  +R   +N G +SR++S R IPKRGQVK+GI+VG+AHS  SIFS
Sbjct: 17 MVISRSGKMNGGGVSRRFSSRPIPKRGQVKVGIVVGLAHSFVSIFS 62

[Close]

BLAST of CSPI06G34280 vs. NCBI nr
Match: gi|223539321|gb|EEF40912.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-06
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 1  MAGTRINAINHGNLSRKYSDRLIPKRGQVKLGIIVGIAHSVTSIFSH 48
          M   R+  ++   +SR+ S R IPKRGQVK+GI+VG+AHSV SIFSH
Sbjct: 1  MEWARMGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSH 47

The following BLAST results are available for this feature:

BLAST of CSPI06G34280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G34280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLE0_CUCSA	1.3e-19	98.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517000 PE=4 SV=1	[more]
F6GYY0_VITVI	1.2e-09	64.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00060 PE=4 SV=...	[more]
F6GYY1_VITVI	6.5e-08	60.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0301g00070 PE=4 SV=...	[more]
A0A0D2T9Z2_GOSRA	7.2e-07	56.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G172100 PE=4 SV=1	[more]
A0A067G885_CITSI	1.6e-06	59.62	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041404mg PE=4 SV=1	[more]

BLAST of CSPI06G34280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G34280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193988\|gb\|KGN49192.1\|	1.8e-19	98.04	hypothetical protein Csa_6G517000 [Cucumis sativus]	[more]
gi\|763786428\|gb\|KJB53424.1\|	1.0e-06	56.86	hypothetical protein B456_009G172100 [Gossypium raimondii]	[more]
gi\|641857023\|gb\|KDO75789.1\|	2.3e-06	59.62	hypothetical protein CISIN_1g041404mg [Citrus sinensis]	[more]
gi\|629109506\|gb\|KCW74652.1\|	3.0e-06	58.70	hypothetical protein EUGRSUZ_E03374 [Eucalyptus grandis]	[more]
gi\|223539321\|gb\|EEF40912.1\|	3.9e-06	57.45	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G34280.1	CSPI06G34280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36615	FAMILY NOT NAMED	coord: 1..50 score: 7.8
None	No IPR available	PANTHER	PTHR36615:SF2	SUBFAMILY NOT NAMED	coord: 1..50 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G34280	Cla001353	Watermelon (97103) v1	cpiwmB519
CSPI06G34280	Csa6G517000	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G34280	MELO3C007317	Melon (DHL92) v3.5.1	cpimeB512
CSPI06G34280	ClCG01G022590	Watermelon (Charleston Gray)	cpiwcgB453
CSPI06G34280	MELO3C007317.2	Melon (DHL92) v3.6.1	cpimedB496
CSPI06G34280	Cla97C01G022460	Watermelon (97103) v2	cpiwmbB433
CSPI06G34280	Cucsa.045910	Cucumber (Gy14) v1	cgycpiB028
CSPI06G34280	CmaCh07G002700	Cucurbita maxima (Rimu)	cmacpiB893
CSPI06G34280	CmaCh03G004810	Cucurbita maxima (Rimu)	cmacpiB688
CSPI06G34280	Cp4.1LG10g09200	Cucurbita pepo (Zucchini)	cpecpiB085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G34280	Melon (DHL92) v3.6.1	cpimedB447
CSPI06G34280	Melon (DHL92) v3.6.1	cpimedB454
CSPI06G34280	Cucumber (Gy14) v2	cgybcpiB037
CSPI06G34280	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G34280	Silver-seed gourd	carcpiB0030
CSPI06G34280	Silver-seed gourd	carcpiB0174
CSPI06G34280	Silver-seed gourd	carcpiB0672
CSPI06G34280	Silver-seed gourd	carcpiB0910
CSPI06G34280	Silver-seed gourd	carcpiB0971
CSPI06G34280	Silver-seed gourd	carcpiB0972
CSPI06G34280	Silver-seed gourd	carcpiB0987
CSPI06G34280	Cucumber (Chinese Long) v3	cpicucB310
CSPI06G34280	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G34280	Cucumber (Chinese Long) v3	cpicucB373
CSPI06G34280	Watermelon (97103) v2	cpiwmbB473
CSPI06G34280	Wax gourd	cpiwgoB634
CSPI06G34280	Wax gourd	cpiwgoB642
CSPI06G34280	Wild cucumber (PI 183967)	cpicpiB038
CSPI06G34280	Wild cucumber (PI 183967)	cpicpiB188
CSPI06G34280	Cucumber (Gy14) v1	cgycpiB175
CSPI06G34280	Cucurbita maxima (Rimu)	cmacpiB231
CSPI06G34280	Cucurbita maxima (Rimu)	cmacpiB426
CSPI06G34280	Cucurbita maxima (Rimu)	cmacpiB644
CSPI06G34280	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB218
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB418
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB517
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB634
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB680
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G34280	Cucurbita moschata (Rifu)	cmocpiB873
CSPI06G34280	Cucumber (Chinese Long) v2	cpicuB261
CSPI06G34280	Cucumber (Chinese Long) v2	cpicuB319
CSPI06G34280	Melon (DHL92) v3.5.1	cpimeB453
CSPI06G34280	Melon (DHL92) v3.5.1	cpimeB462
CSPI06G34280	Watermelon (Charleston Gray)	cpiwcgB478
CSPI06G34280	Watermelon (Charleston Gray)	cpiwcgB482
CSPI06G34280	Watermelon (97103) v1	cpiwmB492
CSPI06G34280	Watermelon (97103) v1	cpiwmB541
CSPI06G34280	Cucurbita pepo (Zucchini)	cpecpiB080
CSPI06G34280	Cucurbita pepo (Zucchini)	cpecpiB503
CSPI06G34280	Cucurbita pepo (Zucchini)	cpecpiB527
CSPI06G34280	Cucurbita pepo (Zucchini)	cpecpiB754
CSPI06G34280	Bottle gourd (USVL1VR-Ls)	cpilsiB430
CSPI06G34280	Bottle gourd (USVL1VR-Ls)	cpilsiB439
CSPI06G34280	Bottle gourd (USVL1VR-Ls)	cpilsiB444