CmaCh06G001060 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G001060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	WRC protein
Location	Cma_Chr06 : 571655 .. 573792 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTCCACGCTGTCATCCCTCCTCCGATTCCCTCCCACCGGCTACCTCCTCTTCCGGTTGCCCCTTCTCTCCAGTGGTGCAGCAACTGCAAGTCATTAAATCCAAAGCCAACAAGAAAGATAAGAAAGTTCTTGGTCTTCTTCTTACACTCCTTCCCTCTTTTCCTCTGTGTTTGGTTCCCATTATTACAGTTCTAATTAGAGGCCATGAGAATCAGAAAGCGGCAGCTCCCATTAGCCTTCTCCTCTGACCCTCGCCCTGTCTCGGATCCCCTCCACGCCCACGCACACGCTCCTCCAAATCCCCACACTAATGCCATGGTCAGTAATCCAATACCCATCTCCTTCCTTGGTTTGCTCTTGATTTGGAAGGATTGACCCTCAAATTAAGGCCAACAAACGCCACAAATGCCTATCTACCACTCATCGCCTCTCTTTCTTTGTGCAGGAGAAGGAACAACAAGAAGACATTGAGGATAATACCAGGTAACAAAATTTATTGTTTTTTTTTTCAGAGGAGCACAAAGGAAAAACATGGCAAGTGGAACCACTGTTTGGATGTTTTTTTTAATGTGTTTTTCATTGCCTTTTGCCTCTCTATATGTTGTGCGCCCATGGGCTGCATGTTCTTCGCTGGTCCACTGCTCCTCTTTCATCTTTTTCACTTTTTTTCTTCCTTTTTTGTGCATTTTTTTTGGTTTTTGGTTTGGTTTTAGGGAGAGATGCGAGTTTGATTCGGAAACAAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGGTCTCACCTTTTTCTCATCATCCCACTCTTCTTTGTTCTTGTGTTGTTTGCCTTTCATCATTTGATGCACTAAATCATATCATTATCATTAGTAGATAGTAACTTTAGATCTCATGGAGTAATGTAACGAGAGCATCTGGGTTATTCTCGACTTATCGTTTTGTAGTGATTTGACATAATATCGTGGTGTAAAATCCTATATTTAACCTCGTGGAATGTTGTCGTTTTTTCCATAATTGATGTTAAGAGTAACTAGCTTGTTTCTATTATTTCTCTGCAAAGGCTTGACTTGTAGAGGGTAGTATTTCAAATCTATGTCGGAATTAGCCAGTGCAAAGATGATCATCGATACTGGGTGTTCGGATAATTCAGAGTCCACGGGAATTGTGGATCAGTTAGGGTAAGCTATGCGAAAAACCGTTGATTTTTGTCGGTTTCATAACAACTTGGACAAAATGGGGTTTTACAAAAAATGGTCTAGTATTTCGGGACGTGAGTTGTATCGTGATAACTTATAACGTTACTCGTTGGAGTACGTTTACTCATCTGGGTTTTGTGTTGGCCTATCAAAGTTCTAACCTTTTTAGAAAATTTGTAGCGTTCGTTTTGATTTGTTTTCGTGAGATCTCGTGGGAGACTTCCTCTGATCGCGATACATCATCACTTAGCTCATTTGAACGTGTGATCAAAAAAATTTATTTGTTCGAACTTGACAATTAAATCGAACATATCATGAGCTATGAACTTTAAGGTTTACAATTGAGTGATAGCTGAATTGGTTGTTTGTTGTAGTGGTGGGGCGGTGGGGCGAAAGCGAGAAGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATAGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTTGGCCACCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTTCATCGCCATCCCCACGGCCACCATTGACATTGACTAGTAAGAAGAGAACGAATCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCAACCCGATGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGGTAAGAAATTATAATTTACTATTTAATCGATCCTTAATTTTTTA

mRNA sequence

CCCCTCCACGCTGTCATCCCTCCTCCGATTCCCTCCCACCGGCTACCTCCTCTTCCGGTTGCCCCTTCTCTCCAGTGGTGCAGCAACTGCAAGTCATTAAATCCAAAGCCAACAAGAAAGATAAGAAAGTTCTTGGTCTTCTTCTTACACTCCTTCCCTCTTTTCCTCTGTGTTTGGTTCCCATTATTACAGTTCTAATTAGAGGCCATGAGAATCAGAAAGCGGCAGCTCCCATTAGCCTTCTCCTCTGACCCTCGCCCTGTCTCGGATCCCCTCCACGCCCACGCACACGCTCCTCCAAATCCCCACACTAATGCCATGGAGAAGGAACAACAAGAAGACATTGAGGATAATACCAGGGAGAGATGCGAGTTTGATTCGGAAACAAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGTGGTGGGGCGGTGGGGCGAAAGCGAGAAGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATAGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTTGGCCACCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTTCATCGCCATCCCCACGGCCACCATTGACATTGACTAGTAAGAAGAGAACGAATCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCAACCCGATGGCGTGATGGCGGTGGCACCACCTCCGCCTCTACCTCCTACACCGCCGGATGACAACATTGACGGTAAGAAATTATAATTTACTATTTAATCGATCCTTAATTTTTTA

Coding sequence (CDS)

ATGAGAATCAGAAAGCGGCAGCTCCCATTAGCCTTCTCCTCTGACCCTCGCCCTGTCTCGGATCCCCTCCACGCCCACGCACACGCTCCTCCAAATCCCCACACTAATGCCATGGAGAAGGAACAACAAGAAGACATTGAGGATAATACCAGGGAGAGATGCGAGTTTGATTCGGAAACAAGCAATGGGGTTGTTCCACAATCCACCTCTTCACCTCAAGTGGTGGGGCGGTGGGGCGAAAGCGAGAAGGAATTTCCATTAAAGAAGAGAAGAAGTGATGATCACAACAACAATGGAAACAAGAAGATGAAGAAGAAACAAGAAGAACACCAATCCAAAATAGGTCTCAACCTCGCCGGAAAAAGGAAATCGAGAGGCGGCGCTTTAATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGGTGGCGCTGCTGCCAACAGACCCTCGTTGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGATCCTTGGCCACCACCGTCGTCGAGAAAGAAGATAACAAGAAGCCTTCTTCATCGCCATCCCCACGGCCACCATTGACATTGACTAGTAAGAAGAGAACGAATCTCGGTGTAGTGAAAGCAAGGTCGATAAGCAGCTTGCTCGGCAACCCGATGGCGTGA

Protein sequence

MRIRKRQLPLAFSSDPRPVSDPLHAHAHAPPNPHTNAMEKEQQEDIEDNTRERCEFDSETSNGVVPQSTSSPQVVGRWGESEKEFPLKKRRSDDHNNNGNKKMKKKQEEHQSKIGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATTVVEKEDNKKPSSSPSPRPPLTLTSKKRTNLGVVKARSISSLLGNPMA

Homology

[Close]

BLAST of CmaCh06G001060 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.6e-47
Identity = 144/275 (52.36%), Postives = 176/275 (64.00%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS--DPRPVSDPLHAHAHAPPNPHTNAMEKEQQEDI--EDNTRERCE 60
           MRIRKRQLPL  FSS  DP PV  PL +      +P  N ++  Q++ +  + ++RE   
Sbjct: 1   MRIRKRQLPLPTFSSLSDP-PVQLPLPSS-----DPPINPLDNNQKQKLLQQYDSRETIL 60

Query: 61  FDSET-SNGVVPQSTSSP-QVVGRWGESEKEFPLKKRR----------SDDHNNNGN--- 120
             +ET +N ++P S+SS  Q  GRW E EK FPLKKRR          +DDH+ + +   
Sbjct: 61  IGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120

Query: 121 -------KKMKKKQ-------EEHQSKIGLN-LAGKRKSRGGALMEGSRCSRVNGRGWRC 180
                  KKM K +        + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPSSSP------- 227
           CQQTLVGYSLCEHHLGKGRLRSMN+VR+RSL        VV ++D KKPS SP       
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240

[Close]

BLAST of CmaCh06G001060 vs. TrEMBL
Match: A0A067JP86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-37
Identity = 123/302 (40.73%), Postives = 156/302 (51.66%), Query Frame = 1


Query: 1   MRIRKRQLPLAFSS-DPRPVSDP-------------------LHAHAHAPP-----NPHT 60
           MRIRKR++P   SS  P P+SDP                    +  +  PP     NP+ 
Sbjct: 1   MRIRKRKVPFPLSSLSPVPLSDPNLRRSPVVQLQLEDDTAAYFNPSSSNPPIGDGNNPYQ 60

Query: 61  NAMEKEQQEDIEDN----------TRERCEFDSETSNGVVPQSTSSPQVVGRWGESEKEF 120
             ++KE ++  +D           TR    F++ET   +V Q ++S    GRW E EK F
Sbjct: 61  EEVKKEAKDSPKDEGGRDGETSNYTRRGSLFNAETETEMVFQESNSSHQDGRWCEGEKAF 120

Query: 121 PLKKRRSD-------------------------DHNNNGNKKMKKKQEEHQSKIGLNLAG 180
           PLKKRR +                          HN++ N   ++ +EE + K       
Sbjct: 121 PLKKRRGNLERSKQEEETKEKKMKTKMNKKCQLQHNSDNNNNNQEIEEEKEIKESNTSTS 180

Query: 181 KRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATTV 223
           K+K RGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM SVR+RS+A++ 
Sbjct: 181 KKKVRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRSMASSA 240

[Close]

BLAST of CmaCh06G001060 vs. TrEMBL
Match: B9II97_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05850g PE=4 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 5.8e-37
Identity = 112/226 (49.56%), Postives = 132/226 (58.41%), Query Frame = 1


Query: 47  EDNTRERCEFDSETSN-GVVPQSTSSPQVVGRWGESEKEFPLKKRRSD-----------D 106
           + N   R  F SE  +  V+ QS+SS Q VGRWGE EK FPLKKRR             D
Sbjct: 104 KSNDTRRGSFLSEGVHVTVLQQSSSSHQGVGRWGEGEKAFPLKKRRGSFERRWNEETIVD 163

Query: 107 HNNNGNKKMKKK-------------QEEHQSKIGLNLAGKRKSRGGALMEGSRCSRVNGR 166
            N     KMK K             ++E ++K G     K K RGGAL+EGSRCSRVNGR
Sbjct: 164 RNKKMKTKMKTKMNKKCVQQNGDNEEDEKETKEGAGSNIKAKPRGGALLEGSRCSRVNGR 223

Query: 167 GWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATTVVEKEDNKKPSSSPSP------ 223
           GWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRS+ATTV +K+++++ SS   P      
Sbjct: 224 GWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSIATTVPKKDESEEVSSHSLPSQKKEE 283

[Close]

BLAST of CmaCh06G001060 vs. TrEMBL
Match: V4UU39_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012160mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.4e-36
Identity = 126/320 (39.38%), Postives = 156/320 (48.75%), Query Frame = 1


Query: 1   MRIRKRQLPLAFSS-DPRPVSDPLH--------------AHAHAP---------PNPHTN 60
           MRIRKRQ+PL  SS  P P+S   H               H + P         P+ H+N
Sbjct: 1   MRIRKRQVPLPLSSLSPIPISSDPHYNGSPVVQLHPGHDPHQNLPQQADAVCSQPSDHSN 60

Query: 61  -----------------AMEKEQQEDIEDNTRERCEFDSETSNGVVPQSTSSPQVVGRWG 120
                             +E E  E  +D+ +         + GV+ Q +SS  VVGRW 
Sbjct: 61  QPIGSGNTLDQMDKDCLVLEDENGEKSDDSRKNSILGAEIAAAGVLSQLSSSHHVVGRWR 120

Query: 121 ESEKEFPLKKRRSDDHNNNGN-KKMKKK--------------------QEEHQSKI---- 180
           E EK FPLKKR S   N+  N KKMK K                    +EE + ++    
Sbjct: 121 EGEKAFPLKKRSSRRENDEDNFKKMKTKLNNKKFAGNDQQEQGEQEEEEEEEEREVTKES 180

Query: 181 ----GLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 223
                 +   KR ++GGA+MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS
Sbjct: 181 VDNNSTSSKNKRGTKGGAIMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNS 240

[Close]

BLAST of CmaCh06G001060 vs. TrEMBL
Match: B9II96_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05840g PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 137/326 (42.02%), Postives = 157/326 (48.16%), Query Frame = 1


Query: 1   MRIRKRQLPLAFSS-DPRPVSDP--------LHAHAHAPPN----PHTNAMEKEQQED-- 60
           MRIRKRQ+PL  SS  P P+SDP        L  H + P N    PH  A    Q  D  
Sbjct: 1   MRIRKRQVPLPLSSLSPVPLSDPQFQTPVVQLQIHKNPPQNLPQQPHRLACYDSQASDQP 60

Query: 61  -----------------------IEDNTRERCEFDSETSNGV--------------VPQS 120
                                  +E + R R   D E SN                +  S
Sbjct: 61  NQPIGGGQDCSGTAGAQQEKKIMLEKDERWR---DGERSNDTRKGSFMGAEIETMNLTPS 120

Query: 121 TSSPQVVGRWGESEKEFPLKKRR-----SDDHN--NNGNKKMK--------------KKQ 180
           + S Q V RWGE EK +PLK+R      SDD        KKMK              KK+
Sbjct: 121 SCSRQGVERWGEGEKAYPLKRRGRFERPSDDEEIIMEKAKKMKTKRNKKCVLQKGNNKKE 180

Query: 181 EEHQSKIGLNLAG-------KRKSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHL 223
           EE    +   L G       KRK+RGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHL
Sbjct: 181 EESNEIVKEGLGGATNNTSVKRKARGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHL 240

[Close]

BLAST of CmaCh06G001060 vs. TAIR10
Match: AT2G42040.1 (AT2G42040.1 WRC (InterPro:IPR014977))

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 104/269 (38.66%), Postives = 134/269 (49.81%), Query Frame = 1


Query: 1   MRIRKRQLPLAFSSD-PRPVSDPLHAHAHA-------------------------PPNPH 60
           MRIRKRQ+PL  SS  P P+SD     +                           PP+  
Sbjct: 1   MRIRKRQVPLPLSSLLPVPLSDLYFNRSPTATARYFRGGYKDGGDDFGSLQLSLPPPSQI 60

Query: 61  TNAM-------EKEQQEDIEDNTRE---RCEFDSETSNGVVP--QSTSSPQVVGRWGESE 120
           ++ +       +KE+ + ++D+  +   +   D+  S  V P  +S SS QVV +   +E
Sbjct: 61  SDRLIQRDLIKKKEEVKALDDDNGDVDVKSRTDASGSKNVNPRGESVSSIQVVEK---NE 120

Query: 121 KEFPLKKRRS----DDHNNNGNKKMKKKQEEHQSKIGLNLAGKRKSR--GGALMEGSRCS 180
           K   L+KRR     +D+ +       ++ EE     G    GK+K++  GG L EGSRCS
Sbjct: 121 KVVSLRKRRGFINFEDYED-------EEDEEASGGGGRINKGKKKAKKSGGGLEEGSRCS 180

Query: 181 RVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV---RSRSLATTVVEKEDNKKPSSSP 223
           RVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN     R       VVE           
Sbjct: 181 RVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMNKSGGGRGGEKKAVVVE----------- 240

[Close]

BLAST of CmaCh06G001060 vs. NCBI nr
Match: gi|659084726|ref|XP_008443039.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 9.5e-49
Identity = 145/266 (54.51%), Postives = 172/266 (64.66%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS---DPRPVSDPLHAHAHAPP-NPHTNAMEKEQQEDIEDNTRERCE 60
           MRIRKRQLPL AFSS    P  +  P  + +  PP NP  N  +K++     D+ RE   
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDS-RETIL 60

Query: 61  FDSET-SNGVVPQSTSSPQVVGRWGESEKEFPLKKRR------SDDHNNNGNK------- 120
             +ET +N ++P S+SS Q  GRW E EK FPLKKRR      SD+ N++ NK       
Sbjct: 61  IGAETINNALLPHSSSSSQGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDIQVATK 120

Query: 121 ----------KMKKK--QEEHQSKIGLNLA-GKRKSRGGALMEGSRCSRVNGRGWRCCQQ 180
                     KM KK    + QSK+GL++  GK++SRGGALMEGSRCSRVNGRGWRCCQQ
Sbjct: 121 LQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQ 180

Query: 181 TLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPS-----SSPSPRPP 225
           TLVGYSLCEHHLGKGRLRSMN+VR+RSLA       VV ++D KKPS     SSP P   
Sbjct: 181 TLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPSPSQFPSSPPPPSS 240

[Close]

BLAST of CmaCh06G001060 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 3.6e-48
Identity = 146/267 (54.68%), Postives = 173/267 (64.79%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS---DPRPVSDPLHAHAHAPP-NPHTNAMEKEQQEDIEDNTRERCE 60
           MRIRKRQLPL AFSS    P  +  P  + +  PP NP  N  +K++     D+ RE   
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDS-RETIL 60

Query: 61  FDSET-SNGVVPQSTSSPQVVG-RWGESEKEFPLKKRR------SDDHNNNGNK------ 120
             +ET +N ++P S+SS QV G RW E EK FPLKKRR      SD+ N++ NK      
Sbjct: 61  IGAETINNALLPHSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDIQVAT 120

Query: 121 -----------KMKKK--QEEHQSKIGLNLA-GKRKSRGGALMEGSRCSRVNGRGWRCCQ 180
                      KM KK    + QSK+GL++  GK++SRGGALMEGSRCSRVNGRGWRCCQ
Sbjct: 121 KLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRCCQ 180

Query: 181 QTLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPS-----SSPSPRP 225
           QTLVGYSLCEHHLGKGRLRSMN+VR+RSLA       VV ++D KKPS     SSP P  
Sbjct: 181 QTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPSPSQFPSSPPPPS 240

[Close]

BLAST of CmaCh06G001060 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 3.6e-48
Identity = 147/274 (53.65%), Postives = 174/274 (63.50%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS---DPRPVSDPLHAHAHAPP-NPHTNAMEKEQQEDIEDNTRERCE 60
           MRIRKRQLPL AFSS    P  +  P  + +  PP NP  N  +K++     D+ RE   
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDS-RETIL 60

Query: 61  FDSET-SNGVVPQSTSSPQVV--------GRWGESEKEFPLKKRR------SDDHNNNGN 120
             +ET +N ++P S+SS QVV        GRW E EK FPLKKRR      SD+ N++ N
Sbjct: 61  IGAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHN 120

Query: 121 K-----------------KMKKK--QEEHQSKIGLNLA-GKRKSRGGALMEGSRCSRVNG 180
           K                 KM KK    + QSK+GL++  GK++SRGGALMEGSRCSRVNG
Sbjct: 121 KDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNG 180

Query: 181 RGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPS----- 225
           RGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VR+RSLA       VV ++D KKPS     
Sbjct: 181 RGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPSPSQFP 240

[Close]

BLAST of CmaCh06G001060 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-47
Identity = 144/276 (52.17%), Postives = 176/276 (63.77%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS--DPRPVSDPLHAHAHAPPNPHTNAMEKEQQEDI--EDNTRERCE 60
           MRIRKRQLPL  FSS  DP PV  PL +      +P  N ++  Q++ +  + ++RE   
Sbjct: 1   MRIRKRQLPLPTFSSLSDP-PVQLPLPSS-----DPPINPLDNNQKQKLLQQYDSRETIL 60

Query: 61  FDSET-SNGVVPQSTSSPQVVG--RWGESEKEFPLKKRR----------SDDHNNNGN-- 120
             +ET +N ++P S+SS   VG  RW E EK FPLKKRR          +DDH+ + +  
Sbjct: 61  IGAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQ 120

Query: 121 --------KKMKKKQ-------EEHQSKIGLN-LAGKRKSRGGALMEGSRCSRVNGRGWR 180
                   KKM K +        + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWR
Sbjct: 121 VATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWR 180

Query: 181 CCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPSSSP------ 227
           CCQQTLVGYSLCEHHLGKGRLRSMN+VR+RSL        VV ++D KKPS SP      
Sbjct: 181 CCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFP 240

[Close]

BLAST of CmaCh06G001060 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 5.2e-47
Identity = 144/275 (52.36%), Postives = 176/275 (64.00%), Query Frame = 1


Query: 1   MRIRKRQLPL-AFSS--DPRPVSDPLHAHAHAPPNPHTNAMEKEQQEDI--EDNTRERCE 60
           MRIRKRQLPL  FSS  DP PV  PL +      +P  N ++  Q++ +  + ++RE   
Sbjct: 1   MRIRKRQLPLPTFSSLSDP-PVQLPLPSS-----DPPINPLDNNQKQKLLQQYDSRETIL 60

Query: 61  FDSET-SNGVVPQSTSSP-QVVGRWGESEKEFPLKKRR----------SDDHNNNGN--- 120
             +ET +N ++P S+SS  Q  GRW E EK FPLKKRR          +DDH+ + +   
Sbjct: 61  IGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120

Query: 121 -------KKMKKKQ-------EEHQSKIGLN-LAGKRKSRGGALMEGSRCSRVNGRGWRC 180
                  KKM K +        + QSK+GL+ + GK++SRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLATT-----VVEKEDNKKPSSSP------- 227
           CQQTLVGYSLCEHHLGKGRLRSMN+VR+RSL        VV ++D KKPS SP       
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240

The following BLAST results are available for this feature:

BLAST of CmaCh06G001060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G001060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX5_CUCSA	3.6e-47	52.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1	[more]
A0A067JP86_JATCU	1.5e-37	40.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1	[more]
B9II97_POPTR	5.8e-37	49.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05850g PE=4 SV=2	[more]
V4UU39_9ROSI	8.4e-36	39.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012160mg PE=4 SV=1	[more]
B9II96_POPTR	1.9e-35	42.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05840g PE=4 SV=1	[more]

BLAST of CmaCh06G001060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42040.1	4.6e-25	38.66	WRC (InterPro:IPR014977)	[more]

BLAST of CmaCh06G001060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084726\|ref\|XP_008443039.1\|	9.5e-49	54.51	PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo]	[more]
gi\|659084724\|ref\|XP_008443038.1\|	3.6e-48	54.68	PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo]	[more]
gi\|659084722\|ref\|XP_008443037.1\|	3.6e-48	53.65	PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo]	[more]
gi\|449437904\|ref\|XP_004136730.1\|	3.1e-47	52.17	PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus]	[more]
gi\|778684741\|ref\|XP_011652086.1\|	5.2e-47	52.36	PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014977	WRC_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0032502	developmental process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001060.1	CmaCh06G001060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 131..171 score: 7.8
IPR014977	WRC domain	PROFILE	PS51667	WRC	coord: 129..173 score: 21
None	No IPR available	PANTHER	PTHR31602:SF19	SUBFAMILY NOT NAMED	coord: 107..194 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G001060	Cucsa.242590	Cucumber (Gy14) v1	cgycmaB0682
CmaCh06G001060	Csa3G806230	Cucumber (Chinese Long) v2	cmacuB826
CmaCh06G001060	MELO3C009616	Melon (DHL92) v3.5.1	cmameB752
CmaCh06G001060	ClCG10G017600	Watermelon (Charleston Gray)	cmawcgB720
CmaCh06G001060	CSPI03G36370	Wild cucumber (PI 183967)	cmacpiB839
CmaCh06G001060	CmoCh06G001000	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G001060	CmoCh14G004160	Cucurbita moschata (Rifu)	cmacmoB798
CmaCh06G001060	Lsi03G017440	Bottle gourd (USVL1VR-Ls)	cmalsiB751
CmaCh06G001060	Cp4.1LG03g04070	Cucurbita pepo (Zucchini)	cmacpeB838
CmaCh06G001060	MELO3C009616.2	Melon (DHL92) v3.6.1	cmamedB852
CmaCh06G001060	CsaV3_3G038720	Cucumber (Chinese Long) v3	cmacucB0976
CmaCh06G001060	Cla97C10G200470	Watermelon (97103) v2	cmawmbB838
CmaCh06G001060	Bhi11G002111	Wax gourd	cmawgoB0993
CmaCh06G001060	CsGy3G033830	Cucumber (Gy14) v2	cgybcmaB439
CmaCh06G001060	Carg03576	Silver-seed gourd	carcmaB0349
CmaCh06G001060	Carg01222	Silver-seed gourd	carcmaB0216

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G001060	CmaCh14G004120	Cucurbita maxima (Rimu)	cmacmaB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G001060	Watermelon (97103) v1	cmawmB781
CmaCh06G001060	Cucurbita pepo (Zucchini)	cmacpeB852