CmaCh04G020060 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G020060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	E3 Ubiquitin ligase family protein
Location	Cma_Chr04 : 12411883 .. 12420824 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTTCAGCGTTGAGGCCGAACTTTCTTAGAAAGAGAGGTGGAGGGGGGGTTCAGGAGAGGACTCGAGTTCTCTCTCTTTTGCTTAATCTTTTCTGAACAAACCAAATTCTTCTTTCTTTTTCTTTTCCTTTTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTTTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTGTTTTTTCCAGAAAATTAGTGGAACCCATTTGTAATTTTGTGTAGTTTGAACTTTTTTGGGTCTAAATTCTGAAGTTCCTTCATTAGTTGGTGGCATGGAGAATTGTAGAACTGAATTTGGAGGTGTTAGCCTGATATCTCGCTAGCATTTTGTCTGCTCTTATCTTCTGCTAACAACTTCGGCCCTGCTTTGTTTTTCTACCTCATAAGGAAATTTGAATTTCAAAAAGTTTCTGAGGCTCTGTTTGCTTGAATTTGATTGGTCATTTCGTATTACTTTCTGGTATGTGTGGAGGGGCCTGCATATGGGCTTGGGTTTTAACTCCCAAACGAAGTTATTTCACTGTCTGGTGGGTATAGAGAAACCTGCATCTGGGTCCCACCTAATTTGAAAGGCTTCGGTTAATCGTTTTTGAAATTCATCTCTGTGCTTGTGTTGAAAAGAAGGTTGCGGCAATTATTTCCACTCTCGGTATATTTAAGGGTAAATTTCAGATGGGCACTCATAATCTCTGGCTATTGAGCTTTGGCTTGCCAATACCTGTCAGCTGTCATTACATAAACTTGCTTTTTAAGAGGACGGGAAGTCTTATATTATGAAATTAGAACATTACTGTAATATATTGTGACTGTGAGTCTATAATATATTTGTCTTGACATGGAATTGTGGAAGAACAATATACAGCCATAACTTGAATGTGGAGGAGTCTTATGCAATACCAAAATCTAGAGCTAGTTTAGTCCTTTATAAGGCCTAGTTTGAATTAGGTTCAAATATTGAAGAGTGTCTTCTTGGGCTTAGTCTGGAACTCTGGGGTAGTATATGGTTTGTTCATATGAATGCAAGGTACATTGCTATTCATGCTTCACATGGTTAACTCAGCTCTAGATATGCATGAAGATTTTTTCTTTGCCATGAATGAGCTGCCATTTACATGTTCTGTTCTAATTAAGTGAACAATGTAGATAAGGAGATATATTGTTGTTTACTCGAAATTTGGAAAACCACTATTATCACTTGTACCAACGAAATGTTTTATTATTTTCTCATTGGAGATTTGTGGGAATGCATTGGAAAAGTCCTTTCCGCTCTTAACATCTGAATTAATAGATAGAATCAATTTATCCTTTTTGTCTGCAGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATGTAAGTGATTCGTCTACTTTGTTTTTAACCTCATCATTTCTTGTAACCCTAACCAATTTCATTTTGTTCTTCCTCGGTAAAGAACACAAATTTAAACATTCCTTTGTGATGCACAGTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGGTAGGTAGTCTCTTTAGTTATTGTTTCTCCTTGGGCTTGTGGAGTGTTTGATTCCATGTATTGGAAGTTTTTCATGCTTGTAGGCTCATAAATAGAGATCAAGTGACTTGGATTTTCCACCAACGTCTGGCCATTAATATGGGTCCACTAGAATAAAGTGATACTATTTCATAATAATCACTCGTACTTTAATCTTAATGCAGCTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGTACAATCATGTTCTTCCACATGATCATGAATTCTTCGTCAATTGTTCGTTTTCTTACCTCTAAGGCTCTGGAAAATTGGAATACACAATTTTATCGTATATGTATTTTTCCTTTGGAGAAAGAATATTTTCCATTTGAGATGAAGTACAAAAAAGAGGATGAGGCATCCTCAAACCCATCGTGGAGGCTTACGAAATACACCCTAATTAGCACCAATATCTAAGAAAGAGTAATGACAAAAAAAGTTACAAAGAGAACTCTGTGTCTTGACTGTTATTCACTAATTGAATAAATAATTGTGCAACTTTGTTATTACGTATCCAAGACTAAAAGTAAAAAAGATTACTTCAACCCTTCTAGAGAAAGCCTTAAACCTTTGGTAATTTGATATTTCTTTGTGATTTTCTCTCCATTTTTCGTTGAGCTAAAATATTTCAGTAATTTTCATTATATCATATTTACTTCATTTTCAATTATATGAACTTTTTCTTGTAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTGTAAGTTGGATTGGAAAATTATTCTTTTGCATATAATGCTGAATGTCAACCAAAATTTCAGCATCAATGATTTACCATCATATGCTATTGTCTGGGGAGTACTACTTAGGTTTTTGCATGGTGATGACTGATTATTAAGAAAACAACGCTTTCTTTTAGCACGTTGCCCTTAGACATGCTACAGTTCCCAAGAGTTCATCAAATTTTTAGATTAAAATTTCCATTATTTGGATAGCTCCTTTTGCTGTACAATTGAAAACGATTTACAAAGGATGGGACTATGGTGTGGTATCATCATTGGAATAGCTATGCTTTTATTTTTTATTTTTTATTTTTATTTTGAGGTCATTGTGCTTGATTGAAGCTAGTGAAAAAGGTAAAAGGGCTTAAAGCTAAAGGAATTATTAAGGCTAATGTTCTCATATCTTAACTTATACCTTGTTACCAGTTTTCGAATCTTCCTGCTTATTCCAGTTGAAATGACACGGTACTTTTTCTGGTTATGATCTAACATATCCTTGAAAGAGCCATGTAATGATTACCTTGATTCTTGGTCATCCTGTATAAGTCTTAGAAAATTAGGTTGTTTGGGCTATTATATTCAAGTGTTTGGTTTTTACAAGTTCCAAGTATATAGATATATATTTGCTATGATATTTTGATACTCAGTTATTGATCTCTGGTTCCAGCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTACGTTTACCTCTTCTTAAATGAACTAAAGATTATTAGAGTCATATTAAGTTGGTACTCACAGTCTTATCGCAACTAGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTTTACAAGACCCTTTATACTAAAGATCTCTGGATGTACGTCATAATGTGTCTTCAGAGTATCAAAGCTCTTGCAGCAAGTTTTTTTTTCAAATTACTGGAAAAGATTGTGACCTGTTAGTTCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATAATACAACTTGAAGCCTTTTGGGTTCTCCATCGGGGAAAATGAACATTTTAGTGCTTTTTTTAATAGGAAACTAAAAATATTATTAACAGAGCCAAGAATAAAGATAGAAAAAAGGGGGATGAGATATTCCCACAAAACCGAGGGGTTACAAAATAGAATCCCAATGGATATGACCGTATGAATAAGTATTTTCGTGCACATAAGTTTATATTCGAAGCTTCATCGTGAAAATATTCTTATGATAATTTTAGTGTTATAGGCATGTAACAAGTGGAGGATGCACGGGATAAATTTCTAATTTTTGAAAATTGATATGAGCTCTGTTTGATAATAATTGTTTTAAGTTTTACGTTTCATTAAATTAAGGTAGATAATGATTTGCCTATTCTGCTTTCTAGTTTTAGTACACTGTTGAAATATTGACAAAACTTCAACTTTTTCTAAAAGAACTACTATTTTTAGAGTTTAGGATTTTGCTATGTTTTAAGAAACATTTTTACAAGTAGAATGGAAAATAAAAAAGAAAAATAAAATAAATCAACCTTAATTTCAAAACGGGGCTTCCCATCATTATATCTTTGAGCGAAAACATGCTATTGACATGCGTGCATGCGACAGGAACTTGCTAGGGAAACTTAAAAAAAGAATAAACATTAGGGAGACGCAGTAAACCATAATCAAAAGGGCATGACCTGTAATACTTGTTCTGTGAACCGGATCATATTGTTGATATGCCTGCTAGTGATACAAACAGTAGGGAGGTTCATTTAACCTTCACAGACTGATAAAAAACACTCCTTTTTGATGCAGGCAATGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTACTGGTACATTGACTTTGAGTCTGCTTTAAAAATATGTGGTTAAATTGCATATTGTGATCCTAAACTTTCGTAGACCCGTTTATTTAATTTCTATACTTTTAAAAGTTGCTAATAGATCCTCAAACTGTTTAATAAGTTTTTGCTAATAATTCATTTGGCAATAGCATGACATGCTAATTATGTATTATTTAAGGATTATGCAATGGGTTGATTTAAAGCTTTGCTCTTGAATAATACAATCAATATGCCGCGTAAGCGTTAAACGCACATGGGGTGGGTTTAAAGCTTAGTTCTTAAATAATACAATCTGTGTGTTAAATAAGTGTTAAACTAATAATGTTAACAGGAGGATCTTATTAGACAAAGTTGGAAATTCAAGTACTTAATAGATTAGATATAATTATCAAAATTTGGAGACCTATTAGAAACCTTTTGAAGTTAAGAACTAAATAGATTGTAACAAGTTTTGGGACAAAAATTCTAGTTTAACCTTGTTTTTCTCTTTTCTTTCCTTGCATATTGAATTGTTCTCGAGAAATTCTTACATAAATCACAATTTCTCCTTAAAAATCTGCAGTATAGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGCTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGTAAATTTTTAAAAAGATGAATTTTAAATGAAAATTTTCTATTGCTTATGGGTTTCTCATTTCAAACATTTCAATTTCAGGGAACACCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTCAATGGAAAAAATTATAATTTTGCTAGTTGGTTCACCTACCTCTGTAAGATATCTTGATATAAGGTCGAAGGCTCGTGAACTGTTAGGGTTCATGCACCATGGATCGAGGTAAATTCTTGATTTTTTGTCTATTTCTTTAGTTGATTCCCAGTTATGCAACTTGAATTGAGTGTAGAATTTACAGGATAATTAGATATTATCCTTTGGTTTATATCAATTTCTTCCTTATTTGTAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTCTATTCTGCTGGAAATTCTGGGTTTGTTTTCGACCCTACTTAACTTCTATCTGATTCTAGGTTTTATCTGATGCCATGTACACTTCAATATATAATGCTAAGACCAACTCTGGGGAATCATATGGGGCTTCAAGTTATTAAGTTCTCTAAATAGGATCTTGAACCTGGACCTTGGAGAGTATCTCCAACGTACCAGACCCTTACCATTAGGACGCCCTTCGAATTCGTTGTTGAACCCTTTAAGAATCGCTGTTATACATGTATACTACTTTAATTCACAATTCTTGTATTTTATTTTATCGATACCATACTTTTTGAGCACGCTACTTACAAGTTGTTTGATCTGGCTCAAATCTAGTAGATTGAGAAATGAAGATTTTGAATGAAGAAATGGTTCAAACTATATTCTCGATTGACATTTGTTGTAGCTTGAAATGGAAAGAAGTTGATGAACTTTCTTTGCTTGATACTATAAAGTAGTGATAAGTCTTCATTATTTTTTCTTTCTTATTCTTGTCTTTAATGCTATTATTCAGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGGTAAAGAGAACGTTATGTCTGCTTCTGGTTACCACATATTTACTGATACAACTTTGATAATATTGATTATTAGGGGCGTATTAGTGATAAACTAGTTAGTTTGTTCGAGGGGGTTATAAATGGAGTCAGGTGATAGAGGTGAACAAATATTTTCGTAAGGATTTGTGATATGAAAACCTTAATGAATGGGATGTAAGAACCCTTTTGGTTCACTAAAATCTCCACCTCAACCTAATTCCAACTTAAGTAAGGGTTAATCACAAAAAAGACCTAGTGATTGACGGCCACAAGGAAGCATGAAACCTATCAATTTTCCCTACTTCCTCATATGCCTTGTCAATCTCCCTAAAAATTCTGTTATTCATTTCAAGCTAAATACCTCGTAACACAACAAAGAAAATTAGCCCGCCACAACACTTTGTCTCTCTCCCTACAGGGAAGATTCGAAAGCACCTCCTCCAATAAAGATTGTCCATCTCCTTGTAAAGCCCTGCTAACACTGTACAAACTCCTCCAATGACTGGAAAGGTGGTTAGCATACTGAGACCCCCCCGCAACAAATAATCCAGGTCTTCCCCATGCCTCCTACAAAGAATGCACCAATGCGGGTACAAAACTAAGAGTGTCGATACGAGATATTAACCTCCAACAAAGAATGCACTAGTCCAGTGTCTTTGACCTTTGATTTCTCTTGTTCGGACACTGAGTCTCTCCATACATTGATAATGATATGTTATTGTCTACTTTGGGGGGCAACTTCCTTAATTTTACTTTTTCGCTTGATGCAAAAGTTCTATTACCAATGAATCGAGAATCTTTCCCATTACCAATGAATATTGGACTATGTTCACATTCCCCATTTGTGTGCTTTGTTTTGAGGTTATATAGTCTTTCGATCAAGTGGCTGCATTTTGTGGGTTCGACGTTGCCTTCTCCAAATCCTTCTTCGATCTCTTTAGGCTTCCAATGTCCTTTGTCTGATAGAGGTGCTGAAAGTAACGGGTCTTTTTAGGGGCAAATATTAATCGTTAGGGAGTAGGGTTGTTAGATAATGGAGAGTATAGGTCCACTCGAAGCCTATCAACCTCTGTATTTCTTCCAACAATTGCGTACTCAGAATTTTCAATTTAAATTCTGGTTCCTATCTTGTACTTGGTCCTGCTCAAATAAATTACCTGGGAAGTCTTTGTGAAGTGTTTTCCCTGTAGTGGACTTCTTTAGTTTCTTTTCTCGTTACAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAACTTCTATATGTAACCTTTTTTGACTCAACTATTTTACTTTTTTAATACTCAGCTATGTTGTTTAACCTATGAGAGAAAGAGAAGCTGTTTTTCCATGGATGGAAAATTATAAATGTTTCTGATGGCTGTATTTGAGAATCATTTCTCTAAATTTGGGTCTTACAGTTGTTGAGAAAGAGGGGGGAGTTCAGCTTTTTTCTTTTTGTTGAAGAATTTATTAAACTGTTGATTCTAAATTTTTCAGGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGGTAATATTCTCCTTCCCCTTTGTTCATCTTCTGCTTGCTTTAACTCTGACAGTCAATTTGACTGTGTTCGTCACGAATGGGATTTCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAGTGAGAAAGCCCCATATTGGTCGGGCTGGCTCAAAGCGCTGGATTGTTGCTTGTGTTTTTTTAGATGGGACAGGCATCAACAGTGTCTAACAACATATGGTGTGTATACAAAATTTCTACACGGACCAGTTTGAAAGTTCACTGAGTGTTGAGTTCCTTGCTTTGGACTGTAATTGAGTGAGATTATGTTTTCAGCAAATATTATGGTATCCATAGTTCACTCAAAGTTGTAAATTCGTCAAACTCATGTAACCTTATGACCAACCCAATTCAACTTTGTAATGTTTGAATCATTTATAAGTTATGTATAGAAAGTGATGATACTTCAGAGATCCATTTTACATATTGTATCAAAAAGAGTTGTTTGATGTCATATATTATCATATCAAAAGGCAATATTATCC

mRNA sequence

TCAATTTCAGCGTTGAGGCCGAACTTTCTTAGAAAGAGAGGTGGAGGGGGGGTTCAGGAGAGGACTCGAGTTCTCTCTCTTTTGCTTAATCTTTTCTGAACAAACCAAATTCTTCTTTCTTTTTCTTTTCCTTTTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTTTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAACTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTTTACAAGACCCTTTATACTAAAGATCTCTGGATTATAGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGCTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACACCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTCTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAGTGAGAAAGCCCCATATTGGTCGGGCTGGCTCAAAGCGCTGGATTGTTGCTTGTGTTTTTTTAGATGGGACAGGCATCAACAGTGTCTAACAACATATGGTGTGTATACAAAATTTCTACACGGACCAGTTTGAAAGTTCACTGAGTGTTGAGTTCCTTGCTTTGGACTGTAATTGAGTGAGATTATGTTTTCAGCAAATATTATGGTATCCATAGTTCACTCAAAGTTGTAAATTCGTCAAACTCATGTAACCTTATGACCAACCCAATTCAACTTTGTAATGTTTGAATCATTTATAAGTTATGTATAGAAAGTGATGATACTTCAGAGATCCATTTTACATATTGTATCAAAAAGAGTTGTTTGATGTCATATATTATCATATCAAAAGGCAATATTATCC

Coding sequence (CDS)

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTTTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAACTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTTTACAAGACCCTTTATACTAAAGATCTCTGGATTATAGCCGAATGCTTTGCATTTCTTGTCTGCACGAAGTGGTATAATCCTATGATTCATAGGCACTCTCTTGTTAGAGAATCCAGTTCCTCTTCGCTGACCATTAGATACCTTGACTGGGATAGAGGTGTGGTTGTTTCCTCTGATGAGGCTCAACCCCAAGTCAGAGTTTGTAACTTGCAGGAAATTGGTGGACACATCATGAAGGTTCCTTTAATCATTTTCCAAATCATGCTTTTTATGCGCTTAGAGGGAACACCTAGGAGTGCTTCCTATATTCCTTGTCTGGTTCTGTTCTCTCCTCTTTTCTTATTGCAAGGGGTGGGTTCAGTATTTGCGGCATATAGGTTGCTAGGTTGGTGGTCAATTGATGAAGGTAGTCAAGAGGAGCAAGCTAAACTCTATTCTGCTGGAAATTCTGGGTATGATACTTTCACACCAGAGACTGTAAAGAAAAGGACCAAATCCAATCTAGTTGATGAGATATGGAGATTACAAGCTGCATTAAATCAGCAGACAGAAGTTACGAAATTGAGCCGCCAGGAGCACGAAAAACTTCTATATGAGAAGATTCTTTGTAGAGTATGCTTTGATGAACCCATTGATATGGTTCTTCTTCCGTGTAGGCATCACATTCTTTGCAGCTCTTGTAGTGAGAAGTGTAATCGTTGCCCAATCTGTCGGGAATCGATCGAAGAACGGCTGCCTGTAAATGATGTTTAG

Protein sequence

MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTAVIDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPLIAHHLDFLIVIFMAILYKTLYTKDLWIIAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRYLDWDRGVVVSSDEAQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQGVGSVFAAYRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERLPVNDV

Homology

[Close]

BLAST of CmaCh04G020060 vs. Swiss-Prot
Match: KN7M_ARATH (Kinesin-like protein KIN-7M, chloroplastic OS=Arabidopsis thaliana GN=KIN7M PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-09
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 392  LCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERL 436
            +C+VCF+ P   +LLPCRH  LC SCS  C+ CPICR  I +RL
Sbjct: 1010 ICKVCFESPTATILLPCRHFCLCKSCSLACSECPICRTKISDRL 1053

[Close]

BLAST of CmaCh04G020060 vs. Swiss-Prot
Match: KN7D_ARATH (Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana GN=KIN7D PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-09
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 364  RLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNR 423
            RL+A + +  E    S+   +   +   +C+VCF+ P   +LLPCRH  LC SCS  C+ 
Sbjct: 982  RLKARMQEMKEKEMKSQANGDANSH---ICKVCFESPTAAILLPCRHFCLCKSCSLACSE 1041

Query: 424  CPICRESIEERL 436
            CPICR  I +RL
Sbjct: 1042 CPICRTKISDRL 1050

[Close]

BLAST of CmaCh04G020060 vs. Swiss-Prot
Match: RNGB_DICDI (RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 368 ALNQQTEVTKLSRQEHEK-LLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPI 427
           ++  Q  + +L   E EK  L ++  C +C   P ++VLLPCRH  LCS C  K  +CPI
Sbjct: 871 SIKDQRYLNRLVSLEKEKDQLKDQNSCVICASNPPNIVLLPCRHSSLCSDCCSKLTKCPI 930

Query: 428 CRESIEERLPV 438
           CR  IE ++ +
Sbjct: 931 CRSHIENKISI 941

[Close]

BLAST of CmaCh04G020060 vs. Swiss-Prot
Match: RFFL_HUMAN (E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-07
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 389 EKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESI 432
           E+ LC++C D PID VLL C H + C+ C ++ N CPICR+ +
Sbjct: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354

[Close]

BLAST of CmaCh04G020060 vs. Swiss-Prot
Match: RFFL_MOUSE (E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-07
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 389 EKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESI 432
           E+ LC++C D PID VLL C H + C+ C ++ N CPICR+ +
Sbjct: 326 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 368

[Close]

BLAST of CmaCh04G020060 vs. TrEMBL
Match: V4KM49_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 4.3e-161
Identity = 299/488 (61.27%), Postives = 358/488 (73.36%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QA++AHG LFSFTL LALKLDH+VS+SWW +F+PLW FH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSWWFIFTPLWFFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ + E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHIPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEAQPQV-RVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE   Q  R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEEHQQSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPASA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVIFATYRLVEKSFLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITNYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TrEMBL
Match: A0A078H6V9_BRANA (BnaC06g29610D protein OS=Brassica napus GN=BnaC06g29610D PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.3e-160
Identity = 302/488 (61.89%), Postives = 357/488 (73.16%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QAL AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TrEMBL
Match: M4CJF5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 2.1e-160
Identity = 301/488 (61.68%), Postives = 358/488 (73.36%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS+QA+ AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSVQAVLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TrEMBL
Match: A0A078E3Q9_BRANA (BnaA07g27450D protein OS=Brassica napus GN=BnaA07g27450D PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 2.8e-160
Identity = 301/488 (61.68%), Postives = 357/488 (73.16%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QA+ AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TrEMBL
Match: A0A087HGR4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 8.1e-160
Identity = 297/488 (60.86%), Postives = 356/488 (72.95%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRR++KS QA++AHG LFSFTL LALKLDHLVS+SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AIL+DN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILIDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR+S + E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEAQPQV-RVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           ++ +RYLDW+RG+VV++DE   Q  R+C LQ+IGGH+MKVP I FQI+LFMRLEGTP SA
Sbjct: 241 TMVVRYLDWNRGLVVTADEENQQSNRICGLQDIGGHVMKVPFITFQIILFMRLEGTPASA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G  FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVFFATYRLVEKSVLLIHSGSGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS++EQA++Y    +GY+TF+PE V K  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSRQEQARIYVGEATGYNTFSPEVVTKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           TE+T  S++E EKLL EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TEITSYSQEEREKLLNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TAIR10
Match: AT1G68820.1 (AT1G68820.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 570.9 bits (1470), Expect = 7.0e-163
Identity = 298/488 (61.07%), Postives = 357/488 (73.16%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QA +AH  LFSFTL LALKLDH+VS+SWW VF+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AIL+DN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILIDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR+S + E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSD-EAQPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++D E Q   R+C LQ+IGGH+MK+P + FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADDEHQQSNRICGLQDIGGHVMKIPFVTFQIILFMRLEGTPASA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFAMYRLVEKSVLLINSGSGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+E+L  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITSYSQQEYERLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. TAIR10
Match: AT1G18470.1 (AT1G18470.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 453.0 bits (1164), Expect = 2.1e-127
Identity = 253/491 (51.53%), Postives = 321/491 (65.38%), Query Frame = 1


Query: 8   LTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLP 67
           ++ RRV KS+QALAAH  LF FTL L LKLDH VS SWW+VF PLW FH V ARGRFSLP
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query: 68  APSMPHDRYWAPWHAVMATPLLVAFEL-----------NFTAVIDLKIVFVPLMIFEIAI 127
           AP  P +R+WAP HAV+ATPLLVAFEL            +   + LKI F+PL+ FE+ I
Sbjct: 61  APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120

Query: 128 LVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPLIA 187
           LVDN+RMCRAL+PGD+ D+++D+ IWE LPHFWV+ISMVF +AAT FTLLKLSG   ++A
Sbjct: 121 LVDNLRMCRALMPGDD-DSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSG--DVVA 180

Query: 188 HHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSSSL 247
                            L   DL+I   IAECFAFLVCTKW NP+IHR S  RE+ SSS 
Sbjct: 181 -----------------LGWWDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSST 240

Query: 248 TIRYLDWDRGVVVSSDEAQPQVRVCNLQEIGGHIMKVPLI-------------------- 307
           +IRYLDW+ G+VV+ +E + Q R C LQ+IGGH++K+P+I                    
Sbjct: 241 SIRYLDWNSGLVVAPEEDRHQDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDI 300

Query: 308 ----IFQIMLFMRLEGTPRSASYIPCLVLFSPLFLLQG-----------------VGSVF 367
               +F  +  ++  G   +AS +    L   + LL+G                 +G + 
Sbjct: 301 SIPVLFSPLFLLQGLGVLFAASKL----LEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLH 360

Query: 368 AAYRLLGWWSIDEGSQEEQAKLYSAGNSGYDTFT---PETVKKRTKSNLVDEIWRLQAAL 427
              RLLGWWSIDEGS+EEQA+LY    SGY+TF+   PE VKK  K +L +E+WRLQAAL
Sbjct: 361 HGSRLLGWWSIDEGSREEQARLYFDQESGYNTFSGHPPEIVKKMPKEDLAEEVWRLQAAL 420

Query: 428 NQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRE 441
            +QTE+TK S+QE+E+L  EK+LCRVCF++ I +VLLPCRH +LC +C++KC  CPICR 
Sbjct: 421 GEQTEITKFSQQEYERLQNEKVLCRVCFEKDISLVLLPCRHRVLCRTCADKCTTCPICRI 467

[Close]

BLAST of CmaCh04G020060 vs. TAIR10
Match: AT1G73950.1 (AT1G73950.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 449.1 bits (1154), Expect = 3.1e-126
Identity = 253/485 (52.16%), Postives = 313/485 (64.54%), Query Frame = 1


Query: 12  RVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAARGRFSLPAPSM 71
           RV KS+QA  AH FLFSFTL L LKLDH ++YSWWVV  PLW FH V ARGRFSLPAP  
Sbjct: 5   RVLKSVQASVAHCFLFSFTLALVLKLDHSITYSWWVVCLPLWAFHAVVARGRFSLPAPIA 64

Query: 72  PHDRYWAPWHAVMATPLLVAFEL-----------NFTAVIDLKIVFVPLMIFEIAILVDN 131
           P +R+WAP HA+++TPLL+AFEL           +    + LKIVF+PL+ FE+ ILVDN
Sbjct: 65  PRNRHWAPCHAIVSTPLLIAFELLLCVYLETAYADSPPAVSLKIVFLPLLAFEVIILVDN 124

Query: 132 IRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPLIAHHLD 191
            RMCRAL+PGDEE +V+DE +WE LPHFWV+ISMVFF+AAT+FTLLKLSG          
Sbjct: 125 ARMCRALMPGDEE-SVNDEAVWEALPHFWVAISMVFFLAATVFTLLKLSGD--------- 184

Query: 192 FLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSSSLTIRY 251
                        L   DL+I   IAECFAFLVCTKW NP+IHR S  RE+ SSS  IRY
Sbjct: 185 ----------VAALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSSRDRETGSSSTNIRY 244

Query: 252 LDWDRGVVVSSDEAQPQVRVCNLQEIGGHIMKVPLIIF-------------------QIM 311
           LDW+ G+ V S++ + Q   C LQ+IGGHIMK+PLI+F                     +
Sbjct: 245 LDWNSGLGVFSEDDRNQ-DTCGLQDIGGHIMKIPLIVFQVVLCMHLEGTPEAAKSISVPV 304

Query: 312 LF---MRLEGTPRSASYIPCLVLFSPLFLLQG-----------------VGSVFAAYRLL 371
           LF     L+G      +    ++   + LL+G                 +G +    RLL
Sbjct: 305 LFSPLFLLQGV--GVLFAASKLIEKVVLLLRGEDDTGLYFRFLSRAHDCLGFLHHGSRLL 364

Query: 372 GWWSIDEGSQEEQAKLYSAGNSGYDTFT---PETVKKRTKSNLVDEIWRLQAALNQQTEV 431
           GWWSIDEGS+EE+A+LY    SGY+TF    PE VKK  K  L +E+WRLQAAL +QTE+
Sbjct: 365 GWWSIDEGSREEEARLYFDQESGYNTFCGHPPEIVKKMPKKELAEEVWRLQAALGEQTEI 424

Query: 432 TKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERL 441
           TK S+QE+E+L  EK+LCRVCF+  I +VLLPCRH +LC +CS+KC +CP CR +IEERL
Sbjct: 425 TKFSQQEYERLQNEKVLCRVCFEREISVVLLPCRHRVLCRNCSDKCKKCPFCRITIEERL 466

[Close]

BLAST of CmaCh04G020060 vs. TAIR10
Match: AT2G21380.1 (AT2G21380.1 Kinesin motor family protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 392  LCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIEERL 436
            +C+VCF+ P   +LLPCRH  LC SCS  C+ CPICR  I +RL
Sbjct: 1010 ICKVCFESPTATILLPCRHFCLCKSCSLACSECPICRTKISDRL 1053

[Close]

BLAST of CmaCh04G020060 vs. TAIR10
Match: AT4G39050.1 (AT4G39050.1 Kinesin motor family protein)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-10
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 364  RLQAALNQQTEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNR 423
            RL+A + +  E    S+   +   +   +C+VCF+ P   +LLPCRH  LC SCS  C+ 
Sbjct: 982  RLKARMQEMKEKEMKSQANGDANSH---ICKVCFESPTAAILLPCRHFCLCKSCSLACSE 1041

Query: 424  CPICRESIEERL 436
            CPICR  I +RL
Sbjct: 1042 CPICRTKISDRL 1050

[Close]

BLAST of CmaCh04G020060 vs. NCBI nr
Match: gi|567124119|ref|XP_006391092.1| (hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum])

HSP 1 Score: 575.9 bits (1483), Expect = 6.2e-161
Identity = 299/488 (61.27%), Postives = 358/488 (73.36%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QA++AHG LFSFTL LALKLDH+VS+SWW +F+PLW FH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSWWFIFTPLWFFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ + E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHIPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEAQPQV-RVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE   Q  R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEEHQQSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPASA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVIFATYRLVEKSFLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITNYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. NCBI nr
Match: gi|923834542|ref|XP_013698722.1| (PREDICTED: uncharacterized protein LOC106402514 isoform X2 [Brassica napus])

HSP 1 Score: 574.3 bits (1479), Expect = 1.8e-160
Identity = 302/488 (61.89%), Postives = 357/488 (73.16%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QAL AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. NCBI nr
Match: gi|922501528|ref|XP_013588323.1| (PREDICTED: uncharacterized protein LOC106296675 isoform X2 [Brassica oleracea var. oleracea])

HSP 1 Score: 573.9 bits (1478), Expect = 2.3e-160
Identity = 302/488 (61.89%), Postives = 356/488 (72.95%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QAL AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL +Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALGEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. NCBI nr
Match: gi|685336207|ref|XP_009105432.1| (PREDICTED: uncharacterized protein LOC103831293 isoform X2 [Brassica rapa])

HSP 1 Score: 573.5 bits (1477), Expect = 3.1e-160
Identity = 301/488 (61.68%), Postives = 358/488 (73.36%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS+QA+ AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSVQAVLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

[Close]

BLAST of CmaCh04G020060 vs. NCBI nr
Match: gi|923666905|ref|XP_013649339.1| (PREDICTED: uncharacterized protein LOC106354042 isoform X2 [Brassica napus])

HSP 1 Score: 573.2 bits (1476), Expect = 4.0e-160
Identity = 301/488 (61.68%), Postives = 357/488 (73.16%), Query Frame = 1


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVVFSPLWLFHLVAA 60
           M+V+ RV++WRRV+KS QA+ AHG LFSFTL LALKLDH+VS SWW +F+PLWLFH V A
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVLAHGLLFSFTLLLALKLDHVVSRSWWFIFTPLWLFHAVIA 60

Query: 61  RGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFELNFTA------VIDLKIVFVPLMIFEI 120
           RGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+          V+DLKIVF+PL+ FE+
Sbjct: 61  RGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDQYVVDLKIVFLPLLAFEV 120

Query: 121 AILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGLGPL 180
           AILVDN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLLKL G    
Sbjct: 121 AILVDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGD--- 180

Query: 181 IAHHLDFLIVIFMAILYKTLYTKDLWI---IAECFAFLVCTKWYNPMIHRHSLVRESSSS 240
                              L   DL+I   IAECFAFLVCTKW N  IHR++ V E SSS
Sbjct: 181 ----------------VAALGWWDLFINFGIAECFAFLVCTKWSNQSIHRYTHVPEPSSS 240

Query: 241 SLTIRYLDWDRGVVVSSDEA-QPQVRVCNLQEIGGHIMKVPLIIFQIMLFMRLEGTPRSA 300
           S+ +RYLDW+RG+VV++DE  Q   R+C LQ+IGGH+MK+P I FQI+LFMRLEGTP SA
Sbjct: 241 SMVVRYLDWNRGLVVTADEENQHSNRICGLQDIGGHVMKIPFITFQIILFMRLEGTPPSA 300

Query: 301 SYIPCLVLFSPLFLLQGVGSVFAAY----------------------------------- 360
             IP LVLF PLFLLQG G +FA Y                                   
Sbjct: 301 KNIPILVLFVPLFLLQGAGVLFATYRLVEKSVLLITSGGGSYGRYFTATSSAREFLGFFQ 360

Query: 361 ---RLLGWWSIDEGSQEEQAKLYSAGNSGYDTFTPETVKKRTKSNLVDEIWRLQAALNQQ 420
              RLLGWWSIDEGS+EEQA+LYS   +GY+TF+PE VKK  KS+LV+EIWRLQAAL++Q
Sbjct: 361 HGARLLGWWSIDEGSREEQARLYSGEATGYNTFSPEVVKKMPKSDLVEEIWRLQAALSEQ 420

Query: 421 TEVTKLSRQEHEKLLYEKILCRVCFDEPIDMVLLPCRHHILCSSCSEKCNRCPICRESIE 441
           T++T  S+QE+EKL  EKILCRVCF++PI++VLLPCRHH+LCS+C EKC +CPICR  IE
Sbjct: 421 TDITTYSQQEYEKLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIE 468

The following BLAST results are available for this feature:

BLAST of CmaCh04G020060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KN7M_ARATH	2.2e-09	56.82	Kinesin-like protein KIN-7M, chloroplastic OS=Arabidopsis thaliana GN=KIN7M PE=2...	[more]
KN7D_ARATH	4.9e-09	41.67	Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana GN=KIN7D PE=2...	[more]
RNGB_DICDI	1.6e-07	39.44	RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2	[more]
RFFL_HUMAN	3.5e-07	48.84	E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1 SV=1	[more]
RFFL_MOUSE	3.5e-07	48.84	E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1 SV=1	[more]

BLAST of CmaCh04G020060 vs. TrEMBL


Match Name	E-value	Identity	Description
V4KM49_EUTSA	4.3e-161	61.27	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1	[more]
A0A078H6V9_BRANA	1.3e-160	61.89	BnaC06g29610D protein OS=Brassica napus GN=BnaC06g29610D PE=4 SV=1	[more]
M4CJF5_BRARP	2.1e-160	61.68	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078E3Q9_BRANA	2.8e-160	61.68	BnaA07g27450D protein OS=Brassica napus GN=BnaA07g27450D PE=4 SV=1	[more]
A0A087HGR4_ARAAL	8.1e-160	60.86	Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1	[more]

BLAST of CmaCh04G020060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68820.1	7.0e-163	61.07	Transmembrane Fragile-X-F-associated protein	[more]
AT1G18470.1	2.1e-127	51.53	Transmembrane Fragile-X-F-associated protein	[more]
AT1G73950.1	3.1e-126	52.16	Transmembrane Fragile-X-F-associated protein	[more]
AT2G21380.1	1.2e-10	56.82	Kinesin motor family protein	[more]
AT4G39050.1	2.8e-10	41.67	Kinesin motor family protein	[more]

BLAST of CmaCh04G020060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567124119\|ref\|XP_006391092.1\|	6.2e-161	61.27	hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum]	[more]
gi\|923834542\|ref\|XP_013698722.1\|	1.8e-160	61.89	PREDICTED: uncharacterized protein LOC106402514 isoform X2 [Brassica napus]	[more]
gi\|922501528\|ref\|XP_013588323.1\|	2.3e-160	61.89	PREDICTED: uncharacterized protein LOC106296675 isoform X2 [Brassica oleracea va...	[more]
gi\|685336207\|ref\|XP_009105432.1\|	3.1e-160	61.68	PREDICTED: uncharacterized protein LOC103831293 isoform X2 [Brassica rapa]	[more]
gi\|923666905\|ref\|XP_013649339.1\|	4.0e-160	61.68	PREDICTED: uncharacterized protein LOC106354042 isoform X2 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR019396	TM_Fragile-X-F-assoc

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020060.1	CmaCh04G020060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 393..428 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 377..434 score: 2.3
IPR019396	Transmembrane Fragile-X-F-associated protein	PFAM	PF10269	Tmemb_185A	coord: 35..305 score: 6.9
None	No IPR available	PANTHER	PTHR10044	INHIBITOR OF APOPTOSIS	coord: 194..440 score: 2.5E-246coord: 1..171 score: 2.5E
None	No IPR available	PANTHER	PTHR10044:SF122	SUBFAMILY NOT NAMED	coord: 194..440 score: 2.5E-246coord: 1..171 score: 2.5E
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 392..433 score: 1.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 383..434 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G020060	CmoCh04G021070	Cucurbita moschata (Rifu)	cmacmoB741
CmaCh04G020060	Cp4.1LG01g17690	Cucurbita pepo (Zucchini)	cmacpeB721

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G020060	Watermelon (97103) v2	cmawmbB768
CmaCh04G020060	Wax gourd	cmawgoB0908
CmaCh04G020060	Cucurbita maxima (Rimu)	cmacmaB018
CmaCh04G020060	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G020060	Bottle gourd (USVL1VR-Ls)	cmalsiB623
CmaCh04G020060	Bottle gourd (USVL1VR-Ls)	cmalsiB683
CmaCh04G020060	Cucumber (Gy14) v2	cgybcmaB657
CmaCh04G020060	Melon (DHL92) v3.6.1	cmamedB747