Cp4.1LG01g17690 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g17690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane Fragile-X-F-associated protein
LocationCp4.1LG01 : 13195619 .. 13196539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAAATTCTTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTANTTAAATTGTCATAAATAGTAAATAGTTATGTAGAGTAAAAATCTATATCCGTTAAATTTATATATGGGTAGTGTTAGATAGTAGATGATTATATATAGTAAAACTAAATGTAGTAAAATGAACCATATATATTATTTGAAATTATCTATTCTCTAGTACATCCATGAAGTAATCAACACAAAATCTTTAAATATTCCTCTCTCATTTTCTCTCTCTTATTTTTTGTGTTCATCTAGATCGAGTGTGTGCGTTGTTGTGCGATCCTAACATTGAGGCGCTACCTCATAAAATTCTCTCTTTGGTGGGGATAACATAGTGTATACTAGCCTTCTCTTGTCATCCTTGGGAGGTTAGTTGGTGAACCCTTCTTATAGGTCCATCAAGTCACACAAGGTCAGGGGAGTGACCCTCTTGTGTTTGTCAACTACTAAGATTACCCGTGTAATCCCATGTCTTCTCTCAAGACGAATTTATTGTGCAAGGTAATCCAATTGAACTGTCGGTCACACAACCCTAACCAACCTAGGCTTGGCTTGACAATACATCTTCACACCTGCGCAGAAACCTAGAATTCATCGCAATTTTTCAGATTCTTTCCATTTTTTTTTTTAATTTTCATATCTTTCTTGAAGTAACTCGAATCAACTTGGTTCTTTTACTAAAGTTTTATAA

mRNA sequence

ACCAAATTCTTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGTAACTCGAATCAACTTGGTTCTTTTACTAAAGTTTTATAA

Coding sequence (CDS)

ACCAAATTCTTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGTAACTCGAATCAACTTGGTTCTTTTACTAAAGTTTTATAA

Protein sequence

TKFFFLFLLLLLLLLLLLLLLLLLLLLLGMVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWCNSNQLGSFTKVL
Homology
[Close]
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match: A0A087HGR4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-09
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRR++KS QA++AHG L SFTL LALKLDHLVS+SW
Sbjct: 1  MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match: V4KM49_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QA++AHG L SFTL LALKLDH+VS+SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match: A0A078H6V9_BRANA (BnaC06g29610D protein OS=Brassica napus GN=BnaC06g29610D PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QAL AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match: A0A0D3CZ28_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QAL AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match: M4CJF5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-08
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS+QA+ AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSVQAVLAHGLLFSFTLLLALKLDHVVSRSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TAIR10
Match: AT1G68820.1 (AT1G68820.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QA +AH  L SFTL LALKLDH+VS+SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. TAIR10
Match: AT1G18470.1 (AT1G18470.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 37 LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          ++ RRV KS+QALAAH  L  FTL L LKLDH VS SW
Sbjct: 1  MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSW 38

[Close]
BLAST of Cp4.1LG01g17690 vs. TAIR10
Match: AT1G73950.1 (AT1G73950.1 Transmembrane Fragile-X-F-associated protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 

Query: 41 RVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          RV KS+QA  AH FL SFTL L LKLDH ++YSW
Sbjct: 5  RVLKSVQASVAHCFLFSFTLALVLKLDHSITYSW 38

[Close]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match: gi|674248551|gb|KFK41316.1| (hypothetical protein AALP_AA2G114300 [Arabis alpina])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRR++KS QA++AHG L SFTL LALKLDHLVS+SW
Sbjct: 1  MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match: gi|567124119|ref|XP_006391092.1| (hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QA++AHG L SFTL LALKLDH+VS+SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match: gi|923834542|ref|XP_013698722.1| (PREDICTED: uncharacterized protein LOC106402514 isoform X2 [Brassica napus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QAL AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match: gi|922501525|ref|XP_013588322.1| (PREDICTED: uncharacterized protein LOC106296675 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QAL AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSW 45

[Close]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match: gi|923834540|ref|XP_013698721.1| (PREDICTED: uncharacterized protein LOC106402514 isoform X1 [Brassica napus])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 

Query: 30 MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSW 75
          M+V+ RV++WRRV+KS QAL AHG L SFTL LALKLDH+VS SW
Sbjct: 1  MLVQRRVMSWRRVWKSFQALLAHGLLFSFTLLLALKLDHVVSRSW 45

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g17690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A087HGR4_ARAAL9.8e-0968.89Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G114300 PE=4 SV=1[more]
V4KM49_EUTSA1.7e-0868.89Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018496mg PE=4 SV=1[more]
A0A078H6V9_BRANA3.7e-0871.11BnaC06g29610D protein OS=Brassica napus GN=BnaC06g29610D PE=4 SV=1[more]
A0A0D3CZ28_BRAOL3.7e-0871.11Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4CJF5_BRARP6.4e-0868.89Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of Cp4.1LG01g17690 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68820.11.6e-1066.67 Transmembrane Fragile-X-F-associated protein[more]
AT1G18470.11.1e-0665.79 Transmembrane Fragile-X-F-associated protein[more]
AT1G73950.12.4e-0667.65 Transmembrane Fragile-X-F-associated protein[more]
BLAST of Cp4.1LG01g17690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|674248551|gb|KFK41316.1|1.4e-0868.89hypothetical protein AALP_AA2G114300 [Arabis alpina][more]
gi|567124119|ref|XP_006391092.1|2.4e-0868.89hypothetical protein EUTSA_v10018496mg [Eutrema salsugineum][more]
gi|923834542|ref|XP_013698722.1|5.4e-0871.11PREDICTED: uncharacterized protein LOC106402514 isoform X2 [Brassica napus][more]
gi|922501525|ref|XP_013588322.1|5.4e-0871.11PREDICTED: uncharacterized protein LOC106296675 isoform X1 [Brassica oleracea va... [more]
gi|923834540|ref|XP_013698721.1|5.4e-0871.11PREDICTED: uncharacterized protein LOC106402514 isoform X1 [Brassica napus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17690.1Cp4.1LG01g17690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17690CmaCh04G020060Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g17690CmoCh04G021080Cucurbita moschata (Rifu)cmocpeB685
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g17690Wax gourdcpewgoB0574
Cp4.1LG01g17690Cucurbita pepo (Zucchini)cpecpeB037
Cp4.1LG01g17690Cucumber (Gy14) v1cgycpeB0757
Cp4.1LG01g17690Cucurbita maxima (Rimu)cmacpeB436
Cp4.1LG01g17690Cucurbita moschata (Rifu)cmocpeB400
Cp4.1LG01g17690Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g17690Cucurbita moschata (Rifu)cmocpeB680
Cp4.1LG01g17690Cucurbita moschata (Rifu)cmocpeB682
Cp4.1LG01g17690Wild cucumber (PI 183967)cpecpiB429
Cp4.1LG01g17690Cucumber (Chinese Long) v2cpecuB434
Cp4.1LG01g17690Bottle gourd (USVL1VR-Ls)cpelsiB313
Cp4.1LG01g17690Watermelon (Charleston Gray)cpewcgB400
Cp4.1LG01g17690Watermelon (97103) v1cpewmB439
Cp4.1LG01g17690Melon (DHL92) v3.5.1cpemeB387
Cp4.1LG01g17690Cucumber (Gy14) v2cgybcpeB640
Cp4.1LG01g17690Melon (DHL92) v3.6.1cpemedB448
Cp4.1LG01g17690Silver-seed gourdcarcpeB1450
Cp4.1LG01g17690Cucumber (Chinese Long) v3cpecucB0535