CmaCh04G013970 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding protein Nova-1
Location	Cma_Chr04 : 7133207 .. 7141262 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTAAACCACTTTTCGAGGTGAATTTGTAAGTTACCTTATCAACTGCAGCAAACCCGATACTAGACTAAGCTCCACTCAATCTAAAAGGATCGAAGTCTGAGTAAGACCAACGCTATTGAAGCTTGACCGAAAGACTATATAGCTATTAAATAGGCGACACTCAATCACACGAGCAATTAAGAAATTAGTGCGAATAATCGAATCGAGTTATAAATTTTGGACAATAATTTTACTTTATAAGCTTTAAAAATTTGGGATATTAAATAAATACTTTGGAACAAAGAAAAAAAGAAGAAGAATATATTACTCTAATTTGGAAAGGTGGATCTTCTACTTAACCCTAATAATTACGTAAAGGCTTACGTTCTCGCAGATAAGGGTTTTCGCGCCCCCAAAATATCCTTATTATTAAAAAAGAAAAAGAAGAAAAAGAAAAAAATTGCATTTTTTTAGACAAATCCAATAAAATAATTAAATAGACAAAAATAAAAAGGAAAAATATAACTGCATATTCAACCTGAGCTTCCATTTTGGCTTTGGTGTTGAACGAGTCGAGTTTTTGCGAGCGCTCTGCCACACCTTCTTCCCCATTTATCAACTACTCTGCAACTCTATCTCTCTTTCTATCTAGCCGCCGCCGCCGCCGCCGCCGTGAAGGAGGAGGAAGGAGAATGGAGTCCACCGAGTCCTCATACGTCTCGTCTCCGGAGGCACCTACGAAACGATCTCCACCGCCGCCAAAATCTCCGAACTCAGGTATCTGATCTGATTTTAATCGCTCTTTTACTGTCATTTTCAACATTTTGATTCCTACTCTCACTGTTTTGTAAGAATTGTGTATGCTTGGAGCTGTTCTTGTATGCGAGTGTTTTTGTTTCAGATCGGTTTGTTTGACGAATGTTGCAATTGCGTCTCTCTCTCTCTCTTTGTTCAACCTTCTTGTTTTTCTCATTATTTTTTGAATTTAAACCCTTGCCTTAAGTGTTTTGTTTGATTTATTTGTGCGGTCGGAGGGAATGAGAAATCGTGCAATTTCGACCTCCAATGGCCTGGACACTCCTGCTTCTTTGCCTGGAAAGCTTAGAAGAAGAGAGTCTGACTTCTGGTAGGGCTTTTTTGTTTTTGGTGTGGGGGAAGGATTAGTCTATTGAGATTTATCACAGTTGACCGAATGAATTGGGGAGCAGTTGTCATTTTCTTGAAGTGCCATTGCCACCGGTTCATCCGTCGATTGACAACAAGCGCACTGCGTCTCCTGGTGTATGTCATAATAGTCGAAAGTTCGCTATCTTTGGTGATTGGACAGCAAGTTGAAAAAGGATAAGTTTCATTTGTTCAAGCAGAGTATTTAAACTGTCTTTTAACCATTTGTTCTTCTATAATTTCATGAAGGCAGCTGAACGTTGAATGCTCTTTGGACATGACGAACTTGTTTTTCCCGTGTATTTCCATTTTAATTCCTGAAATTGCCTCAATGAGAATCTGTATGACGATTTCTTCTAATAATAGGGATAGGATGTAGATAAAACCTTTCCTCAATTCTTCTTTATCATTGATGTTTATCATTTTTTCTTTTGTGAAAACGCAGTAAATAGTCTTATGTAAAATTTGATGTGAAAGCAAGGATTCATAAGACGTTCTATATTTACCACCTACACAGGAATATGCACGATTCTTTACAATGTATAATTATGATTTATATCAAAGGCTTTAGCTCTGTCACATTCTCAACATTGTAGATTAATTTATTAATAGGATCTACATACATTTCTAATTGTTGGTGCATATATGCCGTACATTTTGCGGATATCAAGATTACTTCCTTTTCTGCTTATGAATGTTGTCTCAGTCATCCTAATTGTTATTGTCAGATAATATGGAAAAGGCTACATATATTAGGTTTCTGGTATCAAACGCTGCAGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAATGATTTCCAGTCACAATCTGGTGCACGAATCCAGTTGTCACGAAATCATGAATTTTTCCCTGGAACCACTGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGAACTCGTTCTTGCCAAGTTGTTGAGTGAGGTAACCACTATGTAGTACAAGTTCACTCTAGAATTTAAATGTTCACTGTTTATGATTGATTAAAATTGTGTTTTCTTGTAGCTTCACGCTGAAGAAGTAGATGATGCTGAACCGAGAACAAAAGTGAGATTAATCGTTCCCCATAGTTCATGTGGTGCTATAATTGGCAAAGGAGGATCCACTATAAAGTACGATGATTATTCCTTATTTTTCTAACCCATGGTTACTAATTGCTTTATAATTTACTAGCTTAAACGGTTTATTATTAATTATAATTCGGTTAAATTATTAGTTTAGCCCAAATTGTAAAAGTGCCTAATTGATACTTGATCTTTTAATTATGTGTTTAATTATGTGTCTAATAGGTCCATACATTTTCAACTTTGTGTCTATTAGGTTTGTGAATTTTAACAAAATATTAAAATAGGTCCAGGACCTATTAGACACAAAAAGAAAAGTTTATGGATCTATTAAACGCAAAATTGAAGTTTAGACTTTTTAAAATTTAGGGATCTATTAGACACAATCTATGATTTTAAGGTTTTAAGTATATTTATTTATTCAACTTACAGATCAGAAAAATAGTTGCTAAGTGAACATTTTTTTTATAGTTCCTTGAAGGTATTTTCTATTCAAATTTGCATGAGGGTTCACTTTCCTTGCACAGATTGTTAAACAACTGCTGGCTTGTTTATCTAGGAACTTTTCCCTTCAACTCTATGTCTATATAGGTAATTGTGTAGAATGCAGATTTAGATCCTATTATGCTAGTTCTTGTTTATGCTTTTATTGAAGGAGGTACACATTCTCGTCATAATCCGTTACTTTCAAGTTTCTCAGTCATGTCCAGGAAGAAAGTACCAATTGATAGCGCTGTTTTCTATTTGAACTCCACTTAATTACTGTTAAACATGGTTCAATCTAATACAGAACAGATTCTATGCTAGTAAGGTCACTCCTTTTTTTTTTCTTCTTTTCTTTTTTAAGAAACAAAATTGTATTAAGAGAAAAAGAAAGGAAAATACATCCTAGGGGCAGGGGGTTGAGTGAAATTCCTCCCACAAAAAAGCTAAAAGAAAGAGCTTTCCAACAGTTAAAAGTTGTAGAAGGATTGTAATTTCAAAAATAATTCTTGTGACTAAAACAAAAACTCTACCAAGAAATAGTAAGCTATATACTTCAACAAGAAAGTCTCAAAGAGGATGACGTATCTTCAAAGATCGTCTGATTTCTCTCCAGCCAATATTTGCCTTTTTGGACGCTTCCACCTCAAGAAACTTCAAGGAGCCAACCATCAATAGTCTTTGACAAGTAGCCACACACACACCAAATATGTTCGCTAGGGAATTCCACCCATTGACAGCAAAGGAGTGGAGAAACCAATGGTCTAAGTTCTCTCTTCATTCCTAAGACAGAGGCAACGAATTGAGGAAAACTGAGCCCAACTTTGACTGTTTCTTTAAAGCCAATCTTGAGTATTCTAACCTCTATGGGCTAAAGACCACATATTGAATTTGTTGTTGTGACAGAGCTCTAATGTGTTAAGTTTTATCAACCCATAAATGGTGTATGTTAGATGATAATTCCTCACAGGAAGCAAGTAATGGTATTGTAACAGTGTTGTTTAAGGATTTCAATCTTGCACGTGACTTTTGATTTGGACGACAAAATGGATTGCCTTAGGTTTTCATATCATGGTTAAGGAGTAAATGTTTGAGTATCAGACTCATTGTTGTGTTCGTGAGGTTAAAAAAAAAACAAAAAAATAGGAGAGAGAGTCTGCCCATAGATAGATGATCTCAACTTGTTGAGATTTAAGTATGGAATAGAAGGTTAAAGGATGGAAATAATTGTTGCCTCTAAGATGGTTATGCTGTCTTGTCTAAGCATATTGAGTGGCATTCCTTTCGTTTCATACACACATTGATTTAATGAGTGTACCTTTCCTACACCTACAGGATATGCATAAAACAGTTGTAGTTTATCTCAGTCAGGTAATTGAAGATTCCAGAACTATATGAAGAAAATTTGTTGCGTTGGATAAATGACTCGTAAATGAATAGGAAAAAGAAAAGGGAAAAGAAGAAACATAAGGGACAGAGTTTCCATAATCAGAGGAATTTGAAATTTACATAAATCATGCTTTATTACTCTGCTTCTTTTCTTGGCTAGAAGATGACCTAATCCTTGACTTTTTAAGAGCATCAAATAATCGTTCCATTGGCTTCTGATTCAGTTTAAAATTGTTGCCAAAGATTTGGTAATTTCTCAATAATTTTTTTCATCTTAACCATCCAAGTGTTAAAATAGCCATCTTAATAATAAAAGACTCAAAGGGAATGAGTTCAATTTATGGTGGCCACATTCTTACGAATTTATTATTTTAATATCCTACTATTATCTTTCCAACCAAATGTTATAGGATCAAATCGTTATCATGTGAGAATGTATGTTCTTGCCAAACCAAACACCCATGGATATAATTTATTTTTGTTTGCATCTTTGACTTCTTCTCTATCATTTTTCATTTGTGCACAATCATTTATTTGAATTCCAACTTTATCATTTGATTTTTATGTGAACATAGTATCATTTGATCTTTGGAGTGACAGGCCAACTTTATCAGCTGCTTAAGTTTTGAGATCTTTAAAATGTCTGATCATCAGAATTTCCAGAAGAAAAACTTCTGCTTATTTCGTGTGCACTACATCAGAAAATAAGACTGACAGTGACAGTTCCGATTATGATTCAACTTATCATTCCAAAGATTTTTTTCTCAACTTGATTTGCATTAATGATTTCTAGTGGTTAGTAGTATTTGGTTTTAAAACTTGTCAGCTGGTATTATTATTATTTCTTTTTTACATGAAACAGAACTTGTCGGCTGTTACTGCTTTGGCCAAATTCCAATTATCTTTTTGGTGTTTCTTGATTTGTCTTGTAACTATACCTCCTTTGTAATTAACGCAAGTTTGGTTAGTTCCTTGGAAACTCCCAATGGAGGTTAATAGTTAGGTTATGTCTTTAGGTAACTTTCCATCTAATCGACAAAAAATCAGTCTGATTGAAAACTTGTATTCTGTCACTTATGGTTGCCTACCTTAAAAACACCCATAAAAGTGTGTTTTTGGGCACTAACGCACCAGTACCATTATGCAGGACATTTATTGAGGACTCTCAAGCTGGCATTAAGATATCACCACAAGATAATAACTATATGGGATCCACTGATAGGCTGGTGACGCTGTCTGGAACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCAAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATACCCGAGTATGTCTTTATTTAGCTTTTCTATTTCATTGTGGTATTATATTTTTCCGAACAAAAACTATTAAATGCTCACTTGCATTTTGTGGTTCACAAAATGTCCATCTTTTTTGGGGCACTTTCTTTCATCTGCTATATGTGATGCTGTTGTCTTATCTTTGTTATGACACGAGTAATTTATGTTTTTATGCAAATCAAACAGGTAGTGTAGTTGAAGGTTTAAATCACAACTGAAGAAAAATATTTATACTTAAGAAAAAGAAGGACAAGATGAATAACTAGTTTTCCCGCATGTAAATTCTTGCTGTTTTCGTTATTTTCCTTAGCCATTTAATCTTTTACTTGCTTTTGCTACAGCATCATACAATGCTATGAACAATGCTATGAACTCCGGATCCAACGGAGGAACTGGAGGGAGGTTTCAAAACAACAAGGTTTGTGATACCATGGCAATTTATATCGTTATTATGAGATTTTCCAGAAAGTAATTGAGAAATAATTAACGATGGTTTTATGTGGATGATAGATTATATTGTCTGAACAACATTCCCATGCCATGCGTAGTATTAACTAATATAGTTGATGTTGACGATAAAATGACTTAAATCTCATCAATGTGAGGCTTCTGTTATTTTATGACTTTCTTACATTCAAGAATTTCCTGATGCCAAAATTAGGCAGTAAATATGTTCCTTTGATACTGGATTTCTTTATCAATGAGCAAACATTCACTGCGACAAAAGGCTAAATTGCAGAACAATGTGGATTAGCTGTTCAACTTTCAGTAGGGTAAACAGAAGCGAAGTAATGAAGAAAAAGAAAAGAGTGAAAACAGGATAGCAAGTAAATGAAACCATTTATCATGGTGCAGAACTCAATTGAGCTTCATGAAAAAACCGTAGATAGCCTTCCTGTATTATGCTCTGAAAGAGAAATTTTATGCATTTTCTGTTTTTTGTTGCTGTTTAATCCATCTGTTTGTTGCTGTTTAATCCGTCCTTTCGTTGCTGTTTAATCTGTCTTTTTGTTGCTGTTTAATCTGTCTTTTTGTTGCTGTTAATCCGTCCCTGTAGATAAGTGGAATCTAGATACTGGTTTTCTCTTTTTAACAACTATGTTTCTCTCTATCCCCCCAACTAACTGCTGAAAAAGTGTTTACAATGCATGCAACTGCATGAAATGAGGACTTTATGCAATTGCACATATATATTTCTTATACTTCTCTGTGACTTTATGATATTGCTGACAGAAGATCTTTTGAAATTGTCTAGGAGGAACGGAATAACTCCTTGACTATTGGTGTTTCAGATGGCCACATCGGATTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGTTTGTGTAAACCCCTCCACCTCCAACGCGTCCTATTTCCTTTCCGTGCAAGGTTGATAGTATTCAAGTCACAAATGTTACTCCATGTATTACTTTTTTACATTCAAAAGCGTTTCTTATTACAGGCTAGTGGTGCCAGAATTAAGATATCTGATAGGGGAGATTTCATGTCCGGAACCACTGACAGGTACAGAGGTTCTTTTGATATATTTACTCCCTTTATACTGTTGGTCTGTAAGTTCTTCATGGTAACAGTTGTATACTTGATCTGGAAAAGAAATGGGAAAATTTTAGGGAAATATGCAACTGTTACCATGAAGTCAAAGGACTCCAGTGAAGCAAAATAAAACGTAATGGATAATTATAAAAGTCTTTACATGCAGAGAACCAAAGAGAGGCATGATATGTAAAGATTCTTGTAATTATCCATTAGGTTTTATCTTGTTTGATTGGAGCCTTTCTTAGACCAGCCGACTCTTTTAGGATGTTTCTTTTTATTAAATTACAAGTTTAGTTCGTGCAATTTGAGGTCTTTTGTCTGTTCGAAACAAATACAAGTCAAAACTTAATTTCATTTTATGTCTAATAGAACCCTTTTCAATTATATGTCTAGTACATATGTGAATTTTAAATAGTTTGTAAATTTGGAATATTAGAGACTAAATTGGTACAAATCTCAAAGTTCAAGAACTAAAATTTTAATCGAACACATGCATACTTGATTGGTCCACAATTTGCAGGAAAGTAACGATTACTGGGTCACAAAGAGCAATCCGCGCTGCTGAATCGATGATTCTGCAGAAAGTAGCATATGCTTCTGAGAGGGTAATGCCTTTCAAATCCATTAACGATGCTTTGTACAGTTCTCTTACGATCTATAGCATTTTTTTCGTTATCGAATCGATGCAGGTTCTAGCACAGTGATAGAGTGGCGAAAGCTCTGAATGTTTGTAGAAGCAAGGCCGGGAGGTTTTCAGTTTTACCATTGAGGGAGAGCATGGCAATGGCAATGGAAATGAGAGGAAAAATAGAGTTAAGATTTCCTGGTACGTTGAGAGAGATACGCCATAATTTGATTGATGAGCCAAATAGAAAGATTAGCAGTGTCAAAGTTGTTTATACAATTGTAGCTTTGAATTTATTTTATATTTATGTTTTGAGCTTTATCTCTATTATATTGTTTGAACCTGCCTTCTCTTCACAACAGATTGTAGCTTCTTAG

mRNA sequence

ATGGATCTTAAACCACTTTTCGAGTCGAGTTTTTGCGAGCGCTCTGCCACACCTTCTTCCCCATTTATCAACTACTCTGCAACTCTATCTCTCTTTCTATCTAGCCGCCGCCGCCGCCGCCGCCGTGAAGGAGGAGGAAGGAGAATGGAGTCCACCGAGTCCTCATACGTCTCGTCTCCGGAGGCACCTACGAAACGATCTCCACCGCCGCCAAAATCTCCGAACTCAGATAATATGGAAAAGGCTACATATATTAGGTTTCTGGTATCAAACGCTGCAGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAATGATTTCCAGTCACAATCTGGTGCACGAATCCAGTTGTCACGAAATCATGAATTTTTCCCTGGAACCACTGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGAACTCGTTCTTGCCAAGTTGTTGAGTGAGCTTCACGCTGAAGAAGTAGATGATGCTGAACCGAGAACAAAAGTGAGATTAATCGTTCCCCATAGTTCATGTGGTGCTATAATTGGCAAAGGAGGATCCACTATAAAGACATTTATTGAGGACTCTCAAGCTGGCATTAAGATATCACCACAAGATAATAACTATATGGGATCCACTGATAGGCTGGTGACGCTGTCTGGAACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCAAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATACCCGACATCATACAATGCTATGAACAATGCTATGAACTCCGGATCCAACGGAGGAACTGGAGGGAGGTTTCAAAACAACAAGGAGGAACGGAATAACTCCTTGACTATTGGTGTTTCAGATGGCCACATCGGATTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGTGCCAGAATTAAGATATCTGATAGGGGAGATTTCATGTCCGGAACCACTGACAGGAAAGTAACGATTACTGGGTCACAAAGAGCAATCCGCGCTGCTGAATCGATGATTCTGCAGAAAGTAGCATATGCTTCTGAGAGGCACAGTGATAGAGTGGCGAAAGCTCTGAATGTTTGTAGAAGCAAGGCCGGGAGGTTTTCAGTTTTACCATTGAGGGAGAGCATGGCAATGGCAATGGAAATGAGAGGAAAAATAGAGTTAAGATTTCCTGGTACGTTGAGAGAGATACGCCATAATTTGATTGATGAGCCAAATAGAAAGATTAGCAGTGTCAAAGTTGTTTATACAATTGTAGCTTTGAATTTATTTTATATTTATGTTTTGAGCTTTATCTCTATTATATTGTTTGAACCTGCCTTCTCTTCACAACAGATTGTAGCTTCTTAG

Coding sequence (CDS)

ATGGATCTTAAACCACTTTTCGAGTCGAGTTTTTGCGAGCGCTCTGCCACACCTTCTTCCCCATTTATCAACTACTCTGCAACTCTATCTCTCTTTCTATCTAGCCGCCGCCGCCGCCGCCGCCGTGAAGGAGGAGGAAGGAGAATGGAGTCCACCGAGTCCTCATACGTCTCGTCTCCGGAGGCACCTACGAAACGATCTCCACCGCCGCCAAAATCTCCGAACTCAGATAATATGGAAAAGGCTACATATATTAGGTTTCTGGTATCAAACGCTGCAGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAATGATTTCCAGTCACAATCTGGTGCACGAATCCAGTTGTCACGAAATCATGAATTTTTCCCTGGAACCACTGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGAACTCGTTCTTGCCAAGTTGTTGAGTGAGCTTCACGCTGAAGAAGTAGATGATGCTGAACCGAGAACAAAAGTGAGATTAATCGTTCCCCATAGTTCATGTGGTGCTATAATTGGCAAAGGAGGATCCACTATAAAGACATTTATTGAGGACTCTCAAGCTGGCATTAAGATATCACCACAAGATAATAACTATATGGGATCCACTGATAGGCTGGTGACGCTGTCTGGAACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTCTCAAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATACCCGACATCATACAATGCTATGAACAATGCTATGAACTCCGGATCCAACGGAGGAACTGGAGGGAGGTTTCAAAACAACAAGGAGGAACGGAATAACTCCTTGACTATTGGTGTTTCAGATGGCCACATCGGATTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCTAGTGGTGCCAGAATTAAGATATCTGATAGGGGAGATTTCATGTCCGGAACCACTGACAGGAAAGTAACGATTACTGGGTCACAAAGAGCAATCCGCGCTGCTGAATCGATGATTCTGCAGAAAGTAGCATATGCTTCTGAGAGGCACAGTGATAGAGTGGCGAAAGCTCTGAATGTTTGTAGAAGCAAGGCCGGGAGGTTTTCAGTTTTACCATTGAGGGAGAGCATGGCAATGGCAATGGAAATGAGAGGAAAAATAGAGTTAAGATTTCCTGGTACGTTGAGAGAGATACGCCATAATTTGATTGATGAGCCAAATAGAAAGATTAGCAGTGTCAAAGTTGTTTATACAATTGTAGCTTTGAATTTATTTTATATTTATGTTTTGAGCTTTATCTCTATTATATTGTTTGAACCTGCCTTCTCTTCACAACAGATTGTAGCTTCTTAG

Protein sequence

MDLKPLFESSFCERSATPSSPFINYSATLSLFLSSRRRRRRREGGGRRMESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRAAESMILQKVAYASERHSDRVAKALNVCRSKAGRFSVLPLRESMAMAMEMRGKIELRFPGTLREIRHNLIDEPNRKISSVKVVYTIVALNLFYIYVLSFISIILFEPAFSSQQIVAS

Homology

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BLAST of CmaCh04G013970 vs. Swiss-Prot
Match: BTR1_ARATH (Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.9e-112
Identity = 213/318 (66.98%), Postives = 265/318 (83.33%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTES    SPE   KRSP P  S  +D+ EK T+IRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           Q++SGARIQLSRN EFFPGTTDRIIM+SG+I E++  +EL+L KL SELHAE+ ++ EPR
Sbjct: 61  QAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
            ++RL+VP+SSCG IIGKGG+TIK+FIE+S+AGIKISP DN + G +DRLVTLSGT EEQ
Sbjct: 121 RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRA DLI++KL+ED HY+Q+++ P+SY   YN++N A N     G+GG++QN+KEE + +
Sbjct: 181 MRAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPN-----GSGGKYQNHKEEASTT 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           +TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV+ITG QRAI+ 
Sbjct: 241 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQ 300

Query: 349 AESMILQKVAYASERHSD 367
           AE+MI QKV  A+ER +D
Sbjct: 301 AETMIKQKVDSATERTTD 313

[Close]

BLAST of CmaCh04G013970 vs. Swiss-Prot
Match: NOVA1_MACFA (RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-26
Identity = 77/224 (34.38%), Postives = 131/224 (58.48%), Query Frame = 1


Query: 59  SPEAPTKRSPPPPKSPNSDNMEKATY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 118
           S + P +  P    +  ++  E   Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 119 LSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--- 178
           LS++ +F+PGTT+R+ ++ GT+ E L A+   +A+ + E+       E V   +P+T   
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVN 144

Query: 179 -----KVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGT 238
                +V++IVP+S+ G IIGKGG+T+K  +E S A +++S Q  + +   +R+VT+SG 
Sbjct: 145 PDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS-QKPDGINLQERVVTVSGE 204

Query: 239 IEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNS 269
            E+  +A +LI+ K+ EDP     +N  ++  T   A +N   S
Sbjct: 205 PEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGS 246

[Close]

BLAST of CmaCh04G013970 vs. Swiss-Prot
Match: NOVA1_RAT (RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-26
Identity = 77/220 (35.00%), Postives = 130/220 (59.09%), Query Frame = 1


Query: 59  SPEAPTKRSPPPPKSPNSDNMEKATY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 118
           S + P +  P    +  ++  E   Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 24  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 83

Query: 119 LSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEPRT--- 178
           LS++ +F+PGTT+R+ ++ GTI E L A+   +A+ + E+       E V   +P+T   
Sbjct: 84  LSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVN 143

Query: 179 -----KVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGT 238
                +V++IVP+S+ G IIGKGG+T+K  +E S A +++S Q  + +   +R+VT+SG 
Sbjct: 144 PDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS-QKPDGINLQERVVTVSGE 203

Query: 239 IEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNN 265
            E+  +A +LI+ K+ EDP     +N  ++  T   A +N
Sbjct: 204 PEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSN 241

[Close]

BLAST of CmaCh04G013970 vs. Swiss-Prot
Match: NOVA2_HUMAN (RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-25
Identity = 85/231 (36.80%), Postives = 134/231 (58.01%), Query Frame = 1


Query: 60  PEAPTKRSPP---PPK---SPNSDNMEKATY-IRFLVSNAAAGSVIGKGGSTINDFQSQS 119
           PEAP  R  P   PP+   +  S+  E+  Y ++ L+ + AAGS+IGKGG TI   Q ++
Sbjct: 3   PEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKET 62

Query: 120 GARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSEL-----HAEEVDDAEP 179
           GA I+LS++ +F+PGTT+R+ +V GT  E L A+   +A+ + E+       E V+  +P
Sbjct: 63  GATIKLSKSKDFYPGTTERVCLVQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQP 122

Query: 180 RT--------KVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLV 239
           +T        + +LIVP+S+ G IIGKGG+T+K  +E S A +++S Q    +   +R+V
Sbjct: 123 QTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLS-QKPEGINLQERVV 182

Query: 240 TLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGS 271
           T+SG  E+  +A   IV K+ EDP  +  +N   SY      + N+  +GS
Sbjct: 183 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLN--ISYANVAGPVANSNPTGS 229

[Close]

BLAST of CmaCh04G013970 vs. Swiss-Prot
Match: NOVA1_MOUSE (RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 5.4e-22
Identity = 77/247 (31.17%), Postives = 129/247 (52.23%), Query Frame = 1


Query: 59  SPEAPTKRSPPPPKSPNSDNMEKATY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 118
           S + P +  P    +  ++  E   Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 119 LSRNHEFFPGTTDRIIMVSGTIN----------EILKAMELVLAK--------------- 178
           LS++ +F+PGTT+R+ ++ GTI           E ++ M   +AK               
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNP 144

Query: 179 ------LLSELHAEEVDDAEPRT-----KVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAG 238
                 L S     +   ++P T     +V++IVP+S+ G IIGKGG+T+K  +E S A 
Sbjct: 145 DRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAW 204

Query: 239 IKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNA 269
           +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP     +N  ++  T   A
Sbjct: 205 VQLS-QKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVA 264

[Close]

BLAST of CmaCh04G013970 vs. TrEMBL
Match: A0A0A0KWP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621940 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 1.2e-158
Identity = 301/315 (95.56%), Postives = 304/315 (96.51%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEAP KRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAMELVLAKLLSELHAEE DD EPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NAMN   N    GGTGGRFQNNKEERNNS
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNG---GGTGGRFQNNKEERNNS 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Sbjct: 241 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 300

Query: 349 AESMILQKVAYASER 364
           AESMILQKVAYASER
Sbjct: 301 AESMILQKVAYASER 312

[Close]

BLAST of CmaCh04G013970 vs. TrEMBL
Match: D7TM15_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05360 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 2.3e-133
Identity = 255/315 (80.95%), Postives = 284/315 (90.16%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MES ES+YVSSPE P KRS PP +SP SD MEK+TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 49  MESPESAYVSSPEVPPKRSSPP-RSPTSDFMEKSTYIRFLVSNAAAGSVIGKGGSTINDF 108

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRNHEFFPGT+DRIIM+SG  NEI+KAMEL+LAKLLSE+H E+ D+A+PR
Sbjct: 109 QSQSGARIQLSRNHEFFPGTSDRIIMISGATNEIIKAMELILAKLLSEMHTEDGDEADPR 168

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           +KVRLIVP+SSCG IIGKGGSTIK+FIEDSQA IKISPQDNNY+G TDRLVTL G++EEQ
Sbjct: 169 SKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQASIKISPQDNNYLGLTDRLVTLMGSLEEQ 228

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRA DLI+SKL+EDPHYTQ MN PFSY  +YN+MN   N     G GG+FQNNKE+R+NS
Sbjct: 229 MRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPN-----GAGGKFQNNKEDRSNS 288

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           +TIGV+D HIGLVVGRGGRNI++ISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Sbjct: 289 VTIGVADEHIGLVVGRGGRNIMDISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348

Query: 349 AESMILQKVAYASER 364
           AESMI+QKVA ASER
Sbjct: 349 AESMIMQKVASASER 357

[Close]

BLAST of CmaCh04G013970 vs. TrEMBL
Match: A0A061FNH4_THECC (Binding to TOMV RNA 1L (Long form) isoform 1 OS=Theobroma cacao GN=TCM_043373 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 4.0e-133
Identity = 251/318 (78.93%), Postives = 287/318 (90.25%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEA  KRSPPPPKSP S+  EK TYIRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QS+SGARIQLSRNHEFFPGT+DRIIM+SGTI+E+LKAMEL+LAKLL+EL+ E+ DD EPR
Sbjct: 61  QSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVP+SSCG+IIGKGG+TIK+FIEDSQAGIKISPQDNN+ G  DRLVTL+GT++EQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRA DLI+SKLSEDPHY Q+M+ PFSY  +YN+M+   N     G GG+FQN+KE+R+NS
Sbjct: 181 MRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPSN-----GAGGKFQNHKEDRSNS 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           +TIGV+DGHIGLV+GRGGRNI+EISQ SGARIKISDRGDFMSGTTDRKVTITGSQRAIR 
Sbjct: 241 VTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFMSGTTDRKVTITGSQRAIRQ 300

Query: 349 AESMILQKVAYASERHSD 367
           AESMI+QKVAYA++R  D
Sbjct: 301 AESMIMQKVAYATDRVMD 313

[Close]

BLAST of CmaCh04G013970 vs. TrEMBL
Match: A0A067L9D4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01571 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 3.4e-132
Identity = 247/318 (77.67%), Postives = 285/318 (89.62%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEAP KRSPPPPKSP S+++E+ TYIRFLVSNAAAGSVIGKGG+TI DF
Sbjct: 1   MESTESSYVSSPEAPRKRSPPPPKSPTSESIERPTYIRFLVSNAAAGSVIGKGGATITDF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRN+EFFPGT+DRIIM+SGT++E+LKA+EL+LAKLL+ELH E+ DD +P+
Sbjct: 61  QSQSGARIQLSRNYEFFPGTSDRIIMISGTLDEVLKAVELILAKLLNELHTEDGDDIDPK 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVP+SSCG+IIGKGGS IK+FIE+SQAGIKISPQDNN+ G  DRLVTL+GT+EEQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGSIIKSFIEESQAGIKISPQDNNFYGLNDRLVTLNGTLEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRA DLI+SKL EDPHY+Q+M+ PFSY  +YN+MN   N     G GG+FQN+KE+R NS
Sbjct: 181 MRAIDLILSKLVEDPHYSQTMHAPFSYAVAYNSMNYGPNGA---GPGGKFQNSKEDRTNS 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           +TIG++D HIGLVVGRGGRNI+EISQ SGARIKISDRGDFMSGT DRK+TITGSQRAIRA
Sbjct: 241 VTIGIADEHIGLVVGRGGRNIMEISQVSGARIKISDRGDFMSGTNDRKITITGSQRAIRA 300

Query: 349 AESMILQKVAYASERHSD 367
           AE MI QKVAYASER  D
Sbjct: 301 AEGMIRQKVAYASERGGD 315

[Close]

BLAST of CmaCh04G013970 vs. TrEMBL
Match: A0A061FPQ0_THECC (Binding to TOMV RNA 1L (Long form) isoform 6 OS=Theobroma cacao GN=TCM_043373 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 9.9e-132
Identity = 251/319 (78.68%), Postives = 287/319 (89.97%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEA  KRSPPPPKSP S+  EK TYIRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QS+SGARIQLSRNHEFFPGT+DRIIM+SGTI+E+LKAMEL+LAKLL+EL+ E+ DD EPR
Sbjct: 61  QSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVP+SSCG+IIGKGG+TIK+FIEDSQAGIKISPQDNN+ G  DRLVTL+GT++EQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSY-PTSYNAMNNAMNSGSNGGTGGRFQNNKEERNN 288
           MRA DLI+SKLSEDPHY Q+M+ PFSY   +YN+M+   N     G GG+FQN+KE+R+N
Sbjct: 181 MRAIDLILSKLSEDPHYLQAMHAPFSYAAATYNSMSYPSN-----GAGGKFQNHKEDRSN 240

Query: 289 SLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIR 348
           S+TIGV+DGHIGLV+GRGGRNI+EISQ SGARIKISDRGDFMSGTTDRKVTITGSQRAIR
Sbjct: 241 SVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFMSGTTDRKVTITGSQRAIR 300

Query: 349 AAESMILQKVAYASERHSD 367
            AESMI+QKVAYA++R  D
Sbjct: 301 QAESMIMQKVAYATDRVMD 314

[Close]

BLAST of CmaCh04G013970 vs. TAIR10
Match: AT5G04430.2 (AT5G04430.2 binding to TOMV RNA 1L (long form))

HSP 1 Score: 394.4 bits (1012), Expect = 9.5e-110
Identity = 213/335 (63.58%), Postives = 266/335 (79.40%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTES    SPE   KRSP P  S  +D+ EK T+IRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           Q++SGARIQLSRN EFFPGTTDRIIM+SG+I E++  +EL+L KL SELHAE+ ++ EPR
Sbjct: 61  QAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
            ++RL+VP+SSCG IIGKGG+TIK+FIE+S+AGIKISP DN + G +DRLVTLSGT EEQ
Sbjct: 121 RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSY-----------------PTSYNAMNNAMNSGSN 288
           MRA DLI++KL+ED HY+Q+++ P+SY                 P+   A  N++N   N
Sbjct: 181 MRAIDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYALPSVATAGYNSVNYAPN 240

Query: 289 GGTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSG 348
            G+GG++QN+KEE + ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSG
Sbjct: 241 -GSGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSG 300

Query: 349 TTDRKVTITGSQRAIRAAESMILQKVAYASERHSD 367
           TTDRKV+ITG QRAI+ AE+MI QKV  A+ER +D
Sbjct: 301 TTDRKVSITGPQRAIQQAETMIKQKVDSATERTTD 334

[Close]

BLAST of CmaCh04G013970 vs. TAIR10
Match: AT1G33680.1 (AT1G33680.1 KH domain-containing protein)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-14
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = 1


Query: 81  KATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTIN 140
           ++T  R  V ++  G++IGKGG  +   Q  SGA+IQ+ R+ E  P +  R + + GT++
Sbjct: 230 QSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVS 289

Query: 141 EILKAMELVLAKLLSELHAEEVDDAEPR---TKVRLIVPHSSCGAIIGKGGSTIKTFIED 200
            I KA +L+ A +++E+ A  V     R    ++ + VP    G IIG+GG TIK     
Sbjct: 290 CIEKAEKLINA-VIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNMQTK 349

Query: 201 SQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED 243
           S+A I++ PQ N    S +R V +SG   +   AT LI   + +D
Sbjct: 350 SRARIQLIPQ-NEGDASKERTVRISGDKRQIDIATALIKDVMYQD 392

[Close]

BLAST of CmaCh04G013970 vs. TAIR10
Match: AT4G10070.1 (AT4G10070.1 KH domain-containing protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-12
Identity = 59/200 (29.50%), Postives = 97/200 (48.50%), Query Frame = 1


Query: 72  KSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDR 131
           KS    +  ++T  R  V ++  G +IGKGG TI   Q  SGA+IQ+ R+ E  P +  R
Sbjct: 165 KSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALR 224

Query: 132 IIMVSGTINEILKAMELVLAKLLSELHA----EEVDDAEPRT-------KVRLIVPHSSC 191
            + + G++   +++ E +++ +++E  A      V    P T       ++ + VP+   
Sbjct: 225 PVEIIGSV-ACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKV 284

Query: 192 GAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLS 251
           G IIG+GG TIK     S A  ++ PQ     G  +R V +SG   +   ATD+I   ++
Sbjct: 285 GLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIATDMIKDVMN 344

Query: 252 EDPHYTQSMNYPFSYPTSYN 261
           ++         P SY   YN
Sbjct: 345 QNAR-------PSSYSGGYN 356

[Close]

BLAST of CmaCh04G013970 vs. TAIR10
Match: AT3G04610.1 (AT3G04610.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 53/167 (31.74%), Postives = 82/167 (49.10%), Query Frame = 1


Query: 83  TYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSG----- 142
           T  R LV     GS+IG+ G  I     ++ ARI++       PGTT+R +MVSG     
Sbjct: 187 TVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGP---PGTTERAVMVSGKEEPE 246

Query: 143 -TINEILKAMELVLAKLLSELHAEEVDDAEPRTKV--RLIVPHSSCGAIIGKGGSTIKTF 202
            ++   +  +  V  +++  L  E    A P +KV  RL+VP S  G++IGK G T+K  
Sbjct: 247 SSLPPSMDGLLRVHMRIVDGLDGE-ASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAI 306

Query: 203 IEDSQAGIKISPQDN--NYMGSTDRLVTLSGTIEEQMRATDLIVSKL 240
            E S   +++   ++   +    DR+V + G      RA +LI S L
Sbjct: 307 QEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349

[Close]

BLAST of CmaCh04G013970 vs. TAIR10
Match: AT5G46190.1 (AT5G46190.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-10
Identity = 90/368 (24.46%), Postives = 153/368 (41.58%), Query Frame = 1


Query: 72  KSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDR 131
           K  N D++      R L  +   GSVIGK G  IN  + ++ ARI++    + FPG ++R
Sbjct: 35  KIDNKDDL--VVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVV---DPFPGCSER 94

Query: 132 IIMVSGTINE------------------------ILKAMELVLAKLLSELHAEEVDDAEP 191
           +I +  +++E                        +LK  + ++A L +     ++D  + 
Sbjct: 95  VITIFCSVSEKKDIVDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDF 154

Query: 192 RTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGST-----DRLVTLS 251
           R + RL+VP S C  +IGK GS IK     ++A +K+  +D +    T     D +V +S
Sbjct: 155 R-ECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMIS 214

Query: 252 GTIEEQMRATDLI------VSKLSEDPHYTQSMNYPFS---------YPTS--YNAMNNA 311
           G  E   +A   +      VS   + P  T     P S         YP +  Y + ++ 
Sbjct: 215 GETESVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQDSI 274

Query: 312 MNSGSNGGT--GGRFQNNKEERNNSLTIG-------------------------VSDGHI 367
              G+N  +  G   Q   E   N + +                           S   I
Sbjct: 275 FQHGANVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKI 334

[Close]

BLAST of CmaCh04G013970 vs. NCBI nr
Match: gi|659091924|ref|XP_008446807.1| (PREDICTED: RNA-binding protein Nova-2 [Cucumis melo])

HSP 1 Score: 571.2 bits (1471), Expect = 1.6e-159
Identity = 303/315 (96.19%), Postives = 306/315 (97.14%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEAP KRSPPPPKSPNSDNM+KATYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMDKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAMELVLAKLLSELHAEE DD EPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTSY    NAMN GSNGGTGGRFQNNKEERNNS
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSY----NAMNYGSNGGTGGRFQNNKEERNNS 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Sbjct: 241 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 300

Query: 349 AESMILQKVAYASER 364
           AESMILQKVAYASER
Sbjct: 301 AESMILQKVAYASER 311

[Close]

BLAST of CmaCh04G013970 vs. NCBI nr
Match: gi|778706457|ref|XP_011655857.1| (PREDICTED: RNA-binding protein Nova-2 isoform X2 [Cucumis sativus])

HSP 1 Score: 567.8 bits (1462), Expect = 1.8e-158
Identity = 301/315 (95.56%), Postives = 304/315 (96.51%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEAP KRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAMELVLAKLLSELHAEE DD EPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNKEERNNS 288
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NAMN   N    GGTGGRFQNNKEERNNS
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNG---GGTGGRFQNNKEERNNS 240

Query: 289 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 348
           LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA
Sbjct: 241 LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRAIRA 300

Query: 349 AESMILQKVAYASER 364
           AESMILQKVAYASER
Sbjct: 301 AESMILQKVAYASER 312

[Close]

BLAST of CmaCh04G013970 vs. NCBI nr
Match: gi|449449385|ref|XP_004142445.1| (PREDICTED: RNA-binding protein Nova-2 isoform X1 [Cucumis sativus])

HSP 1 Score: 559.7 bits (1441), Expect = 4.8e-156
Identity = 301/325 (92.62%), Postives = 304/325 (93.54%), Query Frame = 1


Query: 49  MESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 108
           MESTESSYVSSPEAP KRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 109 QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAKLLSELHAEEVDDAEPR 168
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAMELVLAKLLSELHAEE DD EPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 169 TKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 228
           TKVRLIVPHSSCGAIIGKGGSTIK+FIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 229 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNGGTGGRFQNNK------ 288
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NAMN   N G   GTGGRFQNNK      
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNGG---GTGGRFQNNKPDTRSS 240

Query: 289 ----EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVT 348
               EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVT
Sbjct: 241 EIVQEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVT 300

Query: 349 ITGSQRAIRAAESMILQKVAYASER 364
           ITGSQRAIRAAESMILQKVAYASER
Sbjct: 301 ITGSQRAIRAAESMILQKVAYASER 322

[Close]

BLAST of CmaCh04G013970 vs. NCBI nr
Match: gi|1009119990|ref|XP_015876680.1| (PREDICTED: protein BTR1 isoform X6 [Ziziphus jujuba])

HSP 1 Score: 516.2 bits (1328), Expect = 6.1e-143
Identity = 273/334 (81.74%), Postives = 296/334 (88.62%), Query Frame = 1


Query: 37  RRRRRREGGGR----RMESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNA 96
           +    +EGGG      MESTESSYVSSPEAP KRSPPPPKSP SD+MEK TY++FLVSNA
Sbjct: 2   KEEENKEGGGEGERGEMESTESSYVSSPEAPRKRSPPPPKSPTSDSMEKPTYLKFLVSNA 61

Query: 97  AAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAK 156
           AAGSVIGKGG+TI DFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEI+KAM+L+LAK
Sbjct: 62  AAGSVIGKGGATITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEIIKAMDLILAK 121

Query: 157 LLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYM 216
           LLSELH EE DDAE RTKVRLIVP+SSCG IIGKGGSTIK+FIEDSQAGIKISPQDNNY 
Sbjct: 122 LLSELHTEESDDAELRTKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQAGIKISPQDNNYF 181

Query: 217 GSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNG 276
           G  DRLVTL+GT+EEQ+RA DLI+SKL+EDPHY QSMN PFSYP  YNAM+   N     
Sbjct: 182 GLNDRLVTLTGTLEEQLRAIDLIISKLAEDPHYVQSMNAPFSYPAPYNAMSYGPN----- 241

Query: 277 GTGGRFQNNKEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGT 336
           G GG+FQN KE+RNNS+TIGV+DGHIGLVVGRGGRNI+EISQASGARIKISDRGDFMSGT
Sbjct: 242 GAGGKFQNTKEDRNNSVTIGVADGHIGLVVGRGGRNIMEISQASGARIKISDRGDFMSGT 301

Query: 337 TDRKVTITGSQRAIRAAESMILQKVAYASERHSD 367
           TDRKVTITGSQRAIRAAESMI+QKVAYASER  D
Sbjct: 302 TDRKVTITGSQRAIRAAESMIMQKVAYASERVMD 330

[Close]

BLAST of CmaCh04G013970 vs. NCBI nr
Match: gi|1009119988|ref|XP_015876679.1| (PREDICTED: protein BTR1 isoform X5 [Ziziphus jujuba])

HSP 1 Score: 511.5 bits (1316), Expect = 1.5e-141
Identity = 273/335 (81.49%), Postives = 296/335 (88.36%), Query Frame = 1


Query: 37  RRRRRREGGGR----RMESTESSYVSSPEAPTKRSPPPPKSPNSDNMEKATYIRFLVSNA 96
           +    +EGGG      MESTESSYVSSPEAP KRSPPPPKSP SD+MEK TY++FLVSNA
Sbjct: 2   KEEENKEGGGEGERGEMESTESSYVSSPEAPRKRSPPPPKSPTSDSMEKPTYLKFLVSNA 61

Query: 97  AAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMELVLAK 156
           AAGSVIGKGG+TI DFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEI+KAM+L+LAK
Sbjct: 62  AAGSVIGKGGATITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEIIKAMDLILAK 121

Query: 157 LLSELHAEEVDDAEPRTKVRLIVPHSSCGAIIGKGGSTIKTFIEDSQAGIKISPQDNNYM 216
           LLSELH EE DDAE RTKVRLIVP+SSCG IIGKGGSTIK+FIEDSQAGIKISPQDNNY 
Sbjct: 122 LLSELHTEESDDAELRTKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQAGIKISPQDNNYF 181

Query: 217 GSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNNAMNSGSNG 276
           G  DRLVTL+GT+EEQ+RA DLI+SKL+EDPHY QSMN PFSYP  YNAM+   N     
Sbjct: 182 GLNDRLVTLTGTLEEQLRAIDLIISKLAEDPHYVQSMNAPFSYPAPYNAMSYGPN----- 241

Query: 277 GTGGRFQNNK-EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSG 336
           G GG+FQN K E+RNNS+TIGV+DGHIGLVVGRGGRNI+EISQASGARIKISDRGDFMSG
Sbjct: 242 GAGGKFQNTKQEDRNNSVTIGVADGHIGLVVGRGGRNIMEISQASGARIKISDRGDFMSG 301

Query: 337 TTDRKVTITGSQRAIRAAESMILQKVAYASERHSD 367
           TTDRKVTITGSQRAIRAAESMI+QKVAYASER  D
Sbjct: 302 TTDRKVTITGSQRAIRAAESMIMQKVAYASERVMD 331

The following BLAST results are available for this feature:

BLAST of CmaCh04G013970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTR1_ARATH	1.9e-112	66.98	Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1	[more]
NOVA1_MACFA	4.7e-26	34.38	RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1	[more]
NOVA1_RAT	4.7e-26	35.00	RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1	[more]
NOVA2_HUMAN	1.4e-25	36.80	RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1	[more]
NOVA1_MOUSE	5.4e-22	31.17	RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2	[more]

BLAST of CmaCh04G013970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWP6_CUCSA	1.2e-158	95.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621940 PE=4 SV=1	[more]
D7TM15_VITVI	2.3e-133	80.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05360 PE=4 SV=...	[more]
A0A061FNH4_THECC	4.0e-133	78.93	Binding to TOMV RNA 1L (Long form) isoform 1 OS=Theobroma cacao GN=TCM_043373 PE...	[more]
A0A067L9D4_JATCU	3.4e-132	77.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01571 PE=4 SV=1	[more]
A0A061FPQ0_THECC	9.9e-132	78.68	Binding to TOMV RNA 1L (Long form) isoform 6 OS=Theobroma cacao GN=TCM_043373 PE...	[more]

BLAST of CmaCh04G013970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04430.2	9.5e-110	63.58	binding to TOMV RNA 1L (long form)	[more]
AT1G33680.1	2.6e-14	34.55	KH domain-containing protein	[more]
AT4G10070.1	2.4e-12	29.50	KH domain-containing protein	[more]
AT3G04610.1	1.0e-10	31.74	RNA-binding KH domain-containing protein	[more]
AT5G46190.1	1.3e-10	24.46	RNA-binding KH domain-containing protein	[more]

BLAST of CmaCh04G013970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091924\|ref\|XP_008446807.1\|	1.6e-159	96.19	PREDICTED: RNA-binding protein Nova-2 [Cucumis melo]	[more]
gi\|778706457\|ref\|XP_011655857.1\|	1.8e-158	95.56	PREDICTED: RNA-binding protein Nova-2 isoform X2 [Cucumis sativus]	[more]
gi\|449449385\|ref\|XP_004142445.1\|	4.8e-156	92.62	PREDICTED: RNA-binding protein Nova-2 isoform X1 [Cucumis sativus]	[more]
gi\|1009119990\|ref\|XP_015876680.1\|	6.1e-143	81.74	PREDICTED: protein BTR1 isoform X6 [Ziziphus jujuba]	[more]
gi\|1009119988\|ref\|XP_015876679.1\|	1.5e-141	81.49	PREDICTED: protein BTR1 isoform X5 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046719	regulation by virus of viral protein levels in host cell
biological_process	GO:0008380	RNA splicing
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013970.1	CmaCh04G013970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 81..154 score: 1.1E-11coord: 285..358 score: 5.3E-14coord: 167..240 score: 8.6
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 84..155 score: 1.7E-19coord: 168..243 score: 1.6E-19coord: 289..361 score: 1.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 171..236 score: 5.2E-12coord: 85..150 score: 1.3E-13coord: 290..354 score: 8.9
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 168..235 score: 15.493coord: 82..149 score: 16.353coord: 286..353 score: 17
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 288..360 score: 2.34E-16coord: 83..156 score: 2.92E-17coord: 170..244 score: 1.33
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 43..429 score: 8.2E
None	No IPR available	PANTHER	PTHR10288:SF142	PASILLA, ISOFORM D	coord: 43..429 score: 8.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013970	Cucsa.308810	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013970	Cla020523	Watermelon (97103) v1	cmawmB699
CmaCh04G013970	Csa5G621940	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013970	MELO3C012385	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013970	ClCG05G021420	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G013970	CSPI05G26670	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013970	CmoCh04G014710	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013970	CmoCh18G009230	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013970	Lsi04G001140	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013970	Cp4.1LG09g03910	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G013970	Cp4.1LG01g14480	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013970	MELO3C012385.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G013970	CsaV3_5G035820	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013970	Cla97C05G103140	Watermelon (97103) v2	cmawmbB758
CmaCh04G013970	Bhi07G000680	Wax gourd	cmawgoB0903
CmaCh04G013970	CsGy5G026100	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G013970	Carg01930	Silver-seed gourd	carcmaB1170
CmaCh04G013970	Carg20720	Silver-seed gourd	carcmaB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G013970	CmaCh18G009220	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013970	Cucurbita pepo (Zucchini)	cmacpeB734
CmaCh04G013970	Bottle gourd (USVL1VR-Ls)	cmalsiB706
CmaCh04G013970	Silver-seed gourd	carcmaB0966
CmaCh04G013970	Watermelon (97103) v2	cmawmbB787
CmaCh04G013970	Wax gourd	cmawgoB0873
CmaCh04G013970	Cucurbita maxima (Rimu)	cmacmaB332
CmaCh04G013970	Cucurbita maxima (Rimu)	cmacmaB536
CmaCh04G013970	Cucurbita moschata (Rifu)	cmacmoB740
CmaCh04G013970	Melon (DHL92) v3.5.1	cmameB684
CmaCh04G013970	Watermelon (Charleston Gray)	cmawcgB679
CmaCh04G013970	Watermelon (97103) v1	cmawmB667