CmoCh18G009230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G009230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein Nova-1
Location	Cmo_Chr18 : 10388854 .. 10396947 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAACAACTTACATTTAGAACGATCTGATAAATAAATAAATAGATAAATAAAAAAAGAAATTATAAAATAAAATCATAACTGCATCTTCAACTCGAGCTTCCATTTTGGGTTTGGTGCTGAACGAGTCGAGTTTTTGCGAGCGCTCTGCCACATCCTCTTCTCAAATTCTCAACTGCTCTGCAACGCCTCTCTCTCTCTCTCTAGCCGCCGCCGTGAAGGAGGAGGAAAGAGAATGGAGTCTACGGAGTCTTCATACGTATCGTCTCCTGAGGCTCCTGCGAAGCGATCTCCACCGCCGCCAAAATCTCCTAACTCAGGTATCTGATCTGATTTCAATCTCTATTTTACTCTCATTTCGAAAATTTGATCCCTACTCTCGCTGTTTTGTGTGATTTTTTTTTAATGCTTGGAGCTGTTCTTGTATGCGAGTGTTTTTGTTTCAGATCGGTTTGTTTGTGGAATTATGCAATTTGTGTGTTTATTTTTTTTTTGTCCTACGTTGTTCTTTACCTTTTCTGGTTGGAAATGAAACCCTAGCTTTGTGTGTTATGCTTGATTTATTTGTGACGGCCGAGGAAATGATTAATCGTGCAATTTCGACTTCCAATGGTCTGCACTTGTGCTTCCTTGCCTGCAAAGCTTAGAAAAAGAGAGTGTGGCTCCTGGCAGGTTTTATTTTATTTTATTTTTTTTTTATTTTTTGTGAGGAAGTGTTGCTTTATTGAGATTTATTACAGTTGACCGAATGAATTGGGAAGCCGTTGTCATTTTTTTTGAAGTGCCACTGCCACCGATTCATCCGTATATTGATACAAAAAACGCACTGCATCTCCCGGTGTGTGTCATAATAGTCAAAAGTTCGCTATATTTGGTGATGGACAGCGAGTAGAAACATGAGTAGTCTCATGTTTGTTTCAGAAGAGTATTCAAACTCTTTTTCAACCGTCGGTTCTTCTATAATTTCGTGAAGGCAGCTGGATGTGGAAAGCTTATTTGGTTTAACGAACTTGTTTTTTTACATGTACTTCTAATTTGAATTTCTGAACTCGCCTCAATGAGTATTTGTGCGTTGATTTATTATAATAGGGATTGAAACATAGATAAAACCATTTCTCAGTTCCTTTTCATCAGTAATGTTTATAAAGAATCTTATGTAAAATTTAATGTGAAAATTAAGAACTTATAAGTGAGATTCTATGTTACCATCTAGTATGGTAACGTGTATGTTTCTTTATAAGGCACGATTATGATTTATATCGAAGGCTTTAGCTCTGTCACATCTCAACCTTCTAGATTAATTTATGAATAAGATCTAACTACATTTTCCAATTGATAATGCGTATATGCCTATTCAATTTTGTGGTTAAATATCCAATTTTCTTCCATTTCTGCTTACGGATAGTGTTTCACTCTCATCATAATTGCTATTTTCAGATAATATGGAAAAGGGCACATACATTAGGTTTCTTGTATCAAATGCTGCTGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAACGATTTCCAGTCACAGTCTGGTGCACGAATCCAATTGTCACGGAATCATGAATTTTTCCCTGGAACCACCGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGATCTTGTTCTTGCTAAGTTGTTGAGCGAGGTAATCTCTAAGCAGTTCAAGTTCACTCTTGAATTTAAATGTTCATTATTTGTGACTGATAAAAAATTTTGTTTGCTGGTAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCAAGAACAAAAGTGAGACTAATTGTTCCCCACAGTTCATGTGGAGCTATAATTGGCAAAGGAGGGTCCACGATAAAGTATGATGCTTATTCCATATTTCTTCGATTACCATTTTATTGGTTACTAATTGCTTTATAATTTACTTGCTTAAAATTTCAAATATTATTTTTAATTTGGTCAAATTACTAGTTTAGTCGAACTATCAAAATTGTACTTAATAGGTCCCTGAACTTTTAATTTTAAAAAGGCCTAATATGTAAATGGACTTTCAATTGCATGTCTAATAGGTTCTTGAATTTTTTATAAATGTCAAATCGGTCACAAAATTAGAGATTTAGGGACCTATTAGACACAAAATTGAAAGTTTATGGACCTATTAACCACAGCTTATGGACCTATTAACCACAAAATTGAAATTTTAGGAGCTTATTAAACACATACTAAAATTCAGGACTTATTAGATACAACCTTGAAAATTTATGAACTAAAATTATAATTTAACTTTCTTATTTTAAGGTTTTAAATTTATTTATTTTAAATTTTAGACCAGTGGAAAAATAGCCAAGTGAACATGTTTTTTAATAGCTCCGGAAGATATTTTCTGCCTAAATTTGTATGAAGGTTCACTTTCCTTGCAAAGATTGTTAAACAACTGCTGGCTTGTTTATCTAGGAATTTTTCCCTTCAAATCTGTCTATGTAGGTAATTGTGTAGAATGCAGATTTAGATCCTATTATGCTAGTTCTAGTATACACTTTTATTGGAGGGAGGCATTGTATTCTTTTATAATTCATTAAGTTTACGTTCACATCCAGGAAGAAAATATCACTTGATAGATTAGTGCTGTTTTCTGTTCGAACATGACATAATTTTTAGAACTTCTGGACTGAATTGTACAACCTAGAGAACTGATTCTGTTCAAGTAAGGTCACTGTTTGAATACCACATAATGAATTTGTGGCTGTGATGGAATTATAATATGTTCGGGTTTAGGGACCCATAGATGGTGTCTGTTAGATGTTGATCATTCTAACAGGAAGCAAGTAATGGTATTGTAATGATGTTGTTTAAGGATTTGAGAAACCTTCTATGTGACTGGTGAGTTGGGTAATAAAATGGATTAACTTGTATTTGCATATCATGGTGAGGTGTAAATATTTAAGTATCAGAGAGTTAGTGTTGTGTTTGTGAGGTTTCACAATTATATTATTATCTAAGATTTCCTTTATGTTAAAGAAAAAAGGGAGAGAGGGAGAGAACTCAGGAACAGATGAACTCAACTCCGTTGAGATTTGCGAATAGAATAGAAGTTCAAGGGGTGGAAAATAGTTGTTTTCTCTTAGATGGTTATGAAGCCGCCTTCTGTAAGCATATTGAGTGGCATTCTTTTCCTTCCCTCACATTTTTTTTGAGGAGTATCTGTCCTACACATCAGAATATACGTAAAACAGTTCTTGTTTACTTTAGTCGGGAAAATGAAAAGCCAGAATTATATGAAGAAAACTTTTTGCATCAGATAATTGACTTGTAATGAATTGGTCAGGAGACAATCCGATCCTTGAATTTTTTAGAGCAGGTAATGGTCATTCCATTGGCTTCAGTTTCAGCTTAAATTTTTGCTTAAGTTTTGGCAACTTCTTAATAATTGTTTGCATCTTTGTCTTGTCAAGTGATTTTTTCTTTATCATTTAGCATTCATTCACAATCATGCATTTAAATTTCAAATTTCTTCATGTTTATGAGGGAAGCTTATGATATGTGAACAAAATGTCATTTGATTTTTGATGTGGTAGGCCAACTTGAGCAGCTGCTTAAGTTTTGAGGCTTCTAAAATATCTGATCATCTCTCCTAGAAGAAAAATTCTGCTTACTCCATGTGTGCTGCATCAGAAAATCAGACTTAGATAGTGATAAATGATGATGCTAATTTTAAATGATCCCTCCAAAGATTTTTTTTCTTGACTTGATCTGCTTCATTAATGATTTCCAGTGGTTCTTTGTCTTTGGTGACTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTGATGTTTATTCCATCTTTAAATTATGTCACTAAAACTTGTCACCTGTTATTAGTTTGGTCAAAGTCCAATGCTCTTTTCGTTGTTCCTTGATTTGTTTTGTTTCGTAACTACACCCCTTTGTAATTAATGCAAGTTTTGTTAGTTTCTAGGGACTCCTAATTGAAGGTCTCATTAAAATCTTGTCTACTACTATTAATGGTTATCTACCTAAAAAATACCATCACAATGTATATTTTGGATGCTAACGTACTTTTACCATTATGCAGGTCATTTATTGAGGATTCTCAAGCTGGCATTAAGATATCCCCACAGGATAATAACTATATGGGATCCACTGATAGGCTTGTGACACTGTCTGGTACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTTTCGAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATATCCGAGTATGTCTTTGTTTATCAATTATGTTTCGTGTGATATTATATTATTACTAACAAAAGCTATTAAATGCTCGCATGCATTTTGTGGTTCATCAAATGTTCTTCATCTCATATGGGGCACTTCTTTCTTCTGCTATATGTGATGCTGCTACCTCATCTTGGTTATGAGTTATGACATGAGTAATTTATGTTTTATGGAATCAAACAAGTAGTTGTAGTTCAAGGTCTAAATCACAATTTATGATATGTTAAAAAAAAAAAGCATTACCCTGCCTCTAGAGTGAATAAAATCAATTGATACTGCTAAATGTTATTTTTCTGTTTGTTGCATTGCTTTCCATCGTTTCTTTGCAAACCTTTCCATTTTTTCATTTAGAAGTGTTGAGTTATCTACACTGATTTTGTTTTCTGTAATTGGAAATGTATTTATTGAAATGTCAAATTGTAAAATGTTAACGCAATGTAAATATGGAAATGCAATTCAAGAAGTGAATTTTGGGCTTATACTTTTGAGGAACCTCATTTTTTGAGCTACTAAAGGGAAGATCATGGATGAGTAAATATAAGTAAGAGACACTATCTCCATGGTATGAGGTCATTTGGAAAAAATCAAAAGTAAAGCCTTTAGAGCTTATGCTCGAAGTGGACAATATCATACCATATGGAGGTTCGTTGTCCTAGTGGTACCAAAGACATGTCCTTATCTTAACTTTGTCATGTCAATAGAATCCTCAAGCGTCGAACAAAGAAGTTGTGAGTCTCAAAGGTGTAGTCACAGTGAAGATCCATAATAGAAATCTATTGAACTAGCAATGTGCTTCCAGAGTAATGAGTCGTCTAGATAGTGCTACGGATGGATAAATGACTGTTTAAGGAGAGACTCAACGGTGTACTTTGTTCGAAGGGAGGATTTTGAGGATTGTTGGAGTCCCACGTTGGCTAATTAAGAGAAAGATCATGGGGTATATAAGTAAGGGACACTATCTTTATTGGTACGAGATATTTTGGGAAAGACCAAAAGAAAAGCCATGAGAGCTTCTACTCAAAGTGGACAATATCATACCATTGTGGAGGTTCGTTGTCCTATCTCTTCAGAGTTTGAAGATATGGGTCTAAAAAGAGTAGGGACAGTGGTTGAGGAACTGTTGGATTCATTCACGAACTTGGAGTGCAAAAAACCTCTTAAATTTCTACCCTATAAAAAAGAAAATCTAGATTAGAGCAATCTGGGTCCATATGAGTTGGTTTAAAATACCATTTTGACAATTGTAGTTTGAGGTTCATTTCACTCGACTTTCAGATGTCTAATCTTCGTCCCTGTGTTTTCAATCAGTCTTAAAATTAGTTCCTAATATTCGTCCGTGCTTTCAATAAGTCTTAAGATTATTTCCTACAACTAGTTAACAATCAATCATCAACCTAAAACAAGACCAAAGGATATCCATAAAGATTCCTCCAATTGATACAAGACTCCCACACAATGAGCACATGCCTTTCAGTTGATGTAATTGCTGAAGCTTGTGTGTCAGCTTTTGAACTATGAAGGGAGGTGATTGTAGAGGGTATTGTGTTGTCCCAATAATTAAGGCAACTGATGAGAGTTCCAACTGGAGAAAATATTTATACTTCAAAAACACAAAAGGAGAAGATGAATGAATTGTTTTACCTCACATGTAGATTTTTGCTGTTTTGTTATTTTTCGTACCCATTTAATATTTTACTTGTTTTTGCTACAGCCTCATACAATGCTGTGAACTATGCATCTAACGGAGGAGCTGGAGGGAGGTTCCCAAACAATAAGGTTTGTTCATAAACAGTAGCTTTGCTATCACAATTGTCGCCTAACCGAGACTTCGCTAGACAATAACTGGTTTGGTGCTTTTCTCTCATTGATCTTTCACCATGGAACTATACCATGACAATTTATATCATCATATGGGCTTTTCGAGAGAAAATTTGAGAAATATTTGAATGGTTTCATTTAGATGTTAGATTATATTGTCTGAAACAACGTTGCGAAGCGTAGTATTAGCTATAATATGATCGATATTGATGGAAAAATAACTTAAATCCCATCCAATGCTTCTATTATGTAATGAATTTCTTGCATTTAAGAATTTCCTGATGCCCAAATTTAGCTGAAATGATATTTTTTTGATACTGGGTGTTCTCTTTTAATAACTATTCTCCCCAGCCCTCCTAACTGTTTAAAACAGTAATGCGTGCAACTGCACAAAAGATGGGACTTTTAAGCAATTGCATATTTTCCTTTTTAATAATCTTTTTTTCATCCTTTTCAGCGACTGTACGATACTGTTGACCGAAGAGCTTCTGAAATTGTCCAGGAGGAACGGAGTAACTCTTTGACCATTGGCGTTTCCGATGGCCACATCGGGTTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGTTTTAACACCTCCACCTCAAACACTTACTATTTCCTTTCTGATTACATCCAGTTCATAAACCTTACCTCATTACAGGCCAGTGGAGCCAGAATTAAGATATCAGATCGAGGAGATTTCATGTCGGGAACCACCGACAGGTACGGAGGTTCTTTTCCTATATTTCCCTTCATACTGTAGGTTTGCTTGCAAGTTCTTCATGGAAACGGTTGCATACTTGATTCTTCCATACCTTGCAGGAAAGTAACAATTACGGGTTCACAACGGGCAATCCGCTCTGCTGAGTCGATGATTATGCAGAAAGTAGCATATGCTTCTGAGAGGGTAATGCCATTTCAAATCCATTAAAGATGCTGTGTAAATCCGTTCAATACGGTTCTCTCACGCTGTCTCGAATCGATGCAGGTTCTAGCACAGTGATAGAATGGTGAAAGTTGTGAATGCTTGTAGTCGAAGCAAGGCCGGGAGATTTTTCATTTTTACTACTGAGGGAGAGCATGCCAATAGGCAATGGGCGGAGAAATAG

mRNA sequence

AAAAGGAACAACTTACATTTAGAACGATCTGATAAATAAATAAATAGATAAATAAAAAAAGAAATTATAAAATAAAATCATAACTGCATCTTCAACTCGAGCTTCCATTTTGGGTTTGGTGCTGAACGAGTCGAGTTTTTGCGAGCGCTCTGCCACATCCTCTTCTCAAATTCTCAACTGCTCTGCAACGCCTCTCTCTCTCTCTCTAGCCGCCGCCGTGAAGGAGGAGGAAAGAGAATGGAGTCTACGGAGTCTTCATACGTATCGTCTCCTGAGGCTCCTGCGAAGCGATCTCCACCGCCGCCAAAATCTCCTAACTCAGATAATATGGAAAAGGGCACATACATTAGGTTTCTTGTATCAAATGCTGCTGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAACGATTTCCAGTCACAGTCTGGTGCACGAATCCAATTGTCACGGAATCATGAATTTTTCCCTGGAACCACCGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGATCTTGTTCTTGCTAAGTTGTTGAGCGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCAAGAACAAAAGTGAGACTAATTGTTCCCCACAGTTCATGTGGAGCTATAATTGGCAAAGGAGGGTCCACGATAAAGTCATTTATTGAGGATTCTCAAGCTGGCATTAAGATATCCCCACAGGATAATAACTATATGGGATCCACTGATAGGCTTGTGACACTGTCTGGTACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTTTCGAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATATCCGACCTCATACAATGCTGTGAACTATGCATCTAACGGAGGAGCTGGAGGGAGGTTCCCAAACAATAAGCGACTGTACGATACTGTTGACCGAAGAGCTTCTGAAATTGTCCAGGAGGAACGGAGTAACTCTTTGACCATTGGCGTTTCCGATGGCCACATCGGGTTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCCAGTGGAGCCAGAATTAAGATATCAGATCGAGGAGATTTCATGTCGGGAACCACCGACAGGAAAGTAACAATTACGGGTTCACAACGGGCAATCCGCTCTGCTGAGTCGATGATTATGCAGAAAGTAGCATATGCTTCTGAGAGGCACAGTGATAGAATGGTGAAAGTTGTGAATGCTTGTAGTCGAAGCAAGGCCGGGAGATTTTTCATTTTTACTACTGAGGGAGAGCATGCCAATAGGCAATGGGCGGAGAAATAG

Coding sequence (CDS)

ATGGAGTCTACGGAGTCTTCATACGTATCGTCTCCTGAGGCTCCTGCGAAGCGATCTCCACCGCCGCCAAAATCTCCTAACTCAGATAATATGGAAAAGGGCACATACATTAGGTTTCTTGTATCAAATGCTGCTGCTGGTTCTGTAATTGGGAAAGGTGGTTCAACAATTAACGATTTCCAGTCACAGTCTGGTGCACGAATCCAATTGTCACGGAATCATGAATTTTTCCCTGGAACCACCGATAGGATCATTATGGTATCTGGAACAATAAATGAAATACTGAAGGCCATGGATCTTGTTCTTGCTAAGTTGTTGAGCGAGCTTCATGCTGAAGAAGGAGATGATGTTGAACCAAGAACAAAAGTGAGACTAATTGTTCCCCACAGTTCATGTGGAGCTATAATTGGCAAAGGAGGGTCCACGATAAAGTCATTTATTGAGGATTCTCAAGCTGGCATTAAGATATCCCCACAGGATAATAACTATATGGGATCCACTGATAGGCTTGTGACACTGTCTGGTACCATAGAGGAACAGATGCGAGCTACTGACTTGATTGTTTCGAAGCTATCTGAGGATCCACATTACACCCAGTCAATGAATTATCCATTTTCATATCCGACCTCATACAATGCTGTGAACTATGCATCTAACGGAGGAGCTGGAGGGAGGTTCCCAAACAATAAGCGACTGTACGATACTGTTGACCGAAGAGCTTCTGAAATTGTCCAGGAGGAACGGAGTAACTCTTTGACCATTGGCGTTTCCGATGGCCACATCGGGTTAGTTGTTGGTCGTGGTGGAAGAAACATACTGGAAATTAGTCAGGCCAGTGGAGCCAGAATTAAGATATCAGATCGAGGAGATTTCATGTCGGGAACCACCGACAGGAAAGTAACAATTACGGGTTCACAACGGGCAATCCGCTCTGCTGAGTCGATGATTATGCAGAAAGTAGCATATGCTTCTGAGAGGCACAGTGATAGAATGGTGAAAGTTGTGAATGCTTGTAGTCGAAGCAAGGCCGGGAGATTTTTCATTTTTACTACTGAGGGAGAGCATGCCAATAGGCAATGGGCGGAGAAATAG

Homology

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BLAST of CmoCh18G009230 vs. Swiss-Prot
Match: BTR1_ARATH (Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.0e-113
Identity = 218/329 (66.26%), Postives = 268/329 (81.46%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTES    SPE  AKRSP P  S  +D+ EK T+IRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           Q++SGARIQLSRN EFFPGTTDRIIM+SG+I E++  ++L+L KL SELHAE+G++VEPR
Sbjct: 61  QAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
            ++RL+VP+SSCG IIGKGG+TIKSFIE+S+AGIKISP DN + G +DRLVTLSGT EEQ
Sbjct: 121 RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           MRA DLI++KL+ED HY+Q+++ P+SY   YN+VNYA N G+GG++ N+K          
Sbjct: 181 MRAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPN-GSGGKYQNHK---------- 240

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
                EE S ++TIGV+D HIGLV+GRGGRNI+EI+Q +GARIKISDRGDFMSGTTDRKV
Sbjct: 241 -----EEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKV 300

Query: 301 TITGSQRAIRSAESMIMQKVAYASERHSD 330
           +ITG QRAI+ AE+MI QKV  A+ER +D
Sbjct: 301 SITGPQRAIQQAETMIKQKVDSATERTTD 313

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BLAST of CmoCh18G009230 vs. Swiss-Prot
Match: NOVA1_RAT (RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-26
Identity = 75/213 (35.21%), Postives = 129/213 (60.56%), Query Frame = 1


Query: 11  SPEAPAKRSPPPPKSPNSDNMEKGTY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 70
           S + P +  P    +  ++  E G Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 24  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 83

Query: 71  LSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSEL-----HAEEGDDVEPRT--- 130
           LS++ +F+PGTT+R+ ++ GTI E L A+   +A+ + E+       E    ++P+T   
Sbjct: 84  LSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVN 143

Query: 131 -----KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGT 190
                +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG 
Sbjct: 144 PDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS-QKPDGINLQERVVTVSGE 203

Query: 191 IEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPT 210
            E+  +A +LI+ K+ EDP     +N  ++  T
Sbjct: 204 PEQNRKAVELIIQKIQEDPQSGSCLNISYANVT 234

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BLAST of CmoCh18G009230 vs. Swiss-Prot
Match: NOVA2_HUMAN (RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-26
Identity = 80/215 (37.21%), Postives = 130/215 (60.47%), Query Frame = 1


Query: 12  PEAPAKRSPP---PPK---SPNSDNMEKGTY-IRFLVSNAAAGSVIGKGGSTINDFQSQS 71
           PEAP  R  P   PP+   +  S+  E+G Y ++ L+ + AAGS+IGKGG TI   Q ++
Sbjct: 3   PEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKET 62

Query: 72  GARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSEL-----HAEEGDDVEP 131
           GA I+LS++ +F+PGTT+R+ +V GT  E L A+   +A+ + E+       E  + ++P
Sbjct: 63  GATIKLSKSKDFYPGTTERVCLVQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQP 122

Query: 132 RT--------KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLV 191
           +T        + +LIVP+S+ G IIGKGG+T+K+ +E S A +++S Q    +   +R+V
Sbjct: 123 QTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLS-QKPEGINLQERVV 182

Query: 192 TLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFS 207
           T+SG  E+  +A   IV K+ EDP  +  +N  ++
Sbjct: 183 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYA 215

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BLAST of CmoCh18G009230 vs. Swiss-Prot
Match: NOVA1_MACFA (RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.8e-26
Identity = 78/239 (32.64%), Postives = 137/239 (57.32%), Query Frame = 1


Query: 11  SPEAPAKRSPPPPKSPNSDNMEKGTY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 70
           S + P +  P    +  ++  E G Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 71  LSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSEL-----HAEEGDDVEPRT--- 130
           LS++ +F+PGTT+R+ ++ GT+ E L A+   +A+ + E+       E    ++P+T   
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVN 144

Query: 131 -----KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGT 190
                +V++IVP+S+ G IIGKGG+T+K+ +E S A +++S Q  + +   +R+VT+SG 
Sbjct: 145 PDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLS-QKPDGINLQERVVTVSGE 204

Query: 191 IEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDT 236
            E+  +A +LI+ K+ EDP     +N  ++  T       A++   G  + N   +  T
Sbjct: 205 PEQNRKAVELIIQKIQEDPQSGSCLNISYANVTG----PVANSNPTGSPYANTAEVLPT 257

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BLAST of CmoCh18G009230 vs. Swiss-Prot
Match: NOVA1_MOUSE (RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-22
Identity = 79/262 (30.15%), Postives = 134/262 (51.15%), Query Frame = 1


Query: 11  SPEAPAKRSPPPPKSPNSDNMEKGTY-IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQ 70
           S + P +  P    +  ++  E G Y ++ L+ + AAGS+IGKGG TI   Q ++GA I+
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 71  LSRNHEFFPGTTDRIIMVSGTIN----------EILKAMDLVLAK--------------- 130
           LS++ +F+PGTT+R+ ++ GTI           E ++ M   +AK               
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNP 144

Query: 131 ------LLSELHAEEGDDVEPRT-----KVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAG 190
                 L S     +    +P T     +V++IVP+S+ G IIGKGG+T+K+ +E S A 
Sbjct: 145 DRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAW 204

Query: 191 IKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNA 236
           +++S Q  + +   +R+VT+SG  E+  +A +LI+ K+ EDP     +N  ++  T    
Sbjct: 205 VQLS-QKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTG--- 264

[Close]

BLAST of CmoCh18G009230 vs. TrEMBL
Match: A0A0A0KWP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621940 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 6.9e-157
Identity = 299/327 (91.44%), Postives = 306/327 (93.58%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEK TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+LVLAKLLSELHAEEGDDVEPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASN-GGAGGRFPNNKRLYDTVDRR 240
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NA+NY SN GG GGRF NNK         
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNGGGTGGRFQNNK--------- 240

Query: 241 ASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300
                 EER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK
Sbjct: 241 ------EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300

Query: 301 VTITGSQRAIRSAESMIMQKVAYASER 327
           VTITGSQRAIR+AESMI+QKVAYASER
Sbjct: 301 VTITGSQRAIRAAESMILQKVAYASER 312

[Close]

BLAST of CmoCh18G009230 vs. TrEMBL
Match: A0A061FNH4_THECC (Binding to TOMV RNA 1L (Long form) isoform 1 OS=Theobroma cacao GN=TCM_043373 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 1.1e-133
Identity = 255/329 (77.51%), Postives = 290/329 (88.15%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEA  KRSPPPPKSP S+  EK TYIRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QS+SGARIQLSRNHEFFPGT+DRIIM+SGTI+E+LKAM+L+LAKLL+EL+ E+ DDVEPR
Sbjct: 61  QSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVP+SSCG+IIGKGG+TIKSFIEDSQAGIKISPQDNN+ G  DRLVTL+GT++EQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           MRA DLI+SKLSEDPHY Q+M+ PFSY  +YN+++Y SN GAGG+F N+K          
Sbjct: 181 MRAIDLILSKLSEDPHYLQAMHAPFSYAATYNSMSYPSN-GAGGKFQNHK---------- 240

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
                E+RSNS+TIGV+DGHIGLV+GRGGRNI+EISQ SGARIKISDRGDFMSGTTDRKV
Sbjct: 241 -----EDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFMSGTTDRKV 300

Query: 301 TITGSQRAIRSAESMIMQKVAYASERHSD 330
           TITGSQRAIR AESMIMQKVAYA++R  D
Sbjct: 301 TITGSQRAIRQAESMIMQKVAYATDRVMD 313

[Close]

BLAST of CmoCh18G009230 vs. TrEMBL
Match: D7TM15_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05360 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 9.1e-133
Identity = 256/326 (78.53%), Postives = 284/326 (87.12%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MES ES+YVSSPE P KRS PP +SP SD MEK TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 49  MESPESAYVSSPEVPPKRSSPP-RSPTSDFMEKSTYIRFLVSNAAAGSVIGKGGSTINDF 108

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGT+DRIIM+SG  NEI+KAM+L+LAKLLSE+H E+GD+ +PR
Sbjct: 109 QSQSGARIQLSRNHEFFPGTSDRIIMISGATNEIIKAMELILAKLLSEMHTEDGDEADPR 168

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           +KVRLIVP+SSCG IIGKGGSTIKSFIEDSQA IKISPQDNNY+G TDRLVTL G++EEQ
Sbjct: 169 SKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQASIKISPQDNNYLGLTDRLVTLMGSLEEQ 228

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           MRA DLI+SKL+EDPHYTQ MN PFSY  +YN++NY  N GAGG+F NNK          
Sbjct: 229 MRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPN-GAGGKFQNNK---------- 288

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
                E+RSNS+TIGV+D HIGLVVGRGGRNI++ISQASGARIKISDRGDFMSGTTDRKV
Sbjct: 289 -----EDRSNSVTIGVADEHIGLVVGRGGRNIMDISQASGARIKISDRGDFMSGTTDRKV 348

Query: 301 TITGSQRAIRSAESMIMQKVAYASER 327
           TITGSQRAIR+AESMIMQKVA ASER
Sbjct: 349 TITGSQRAIRAAESMIMQKVASASER 357

[Close]

BLAST of CmoCh18G009230 vs. TrEMBL
Match: A0A061FPQ0_THECC (Binding to TOMV RNA 1L (Long form) isoform 6 OS=Theobroma cacao GN=TCM_043373 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 2.7e-132
Identity = 255/330 (77.27%), Postives = 290/330 (87.88%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEA  KRSPPPPKSP S+  EK TYIRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESSYVSSPEAARKRSPPPPKSPTSETAEKHTYIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QS+SGARIQLSRNHEFFPGT+DRIIM+SGTI+E+LKAM+L+LAKLL+EL+ E+ DDVEPR
Sbjct: 61  QSKSGARIQLSRNHEFFPGTSDRIIMISGTIDEVLKAMELILAKLLNELNIEDNDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVP+SSCG+IIGKGG+TIKSFIEDSQAGIKISPQDNN+ G  DRLVTL+GT++EQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGATIKSFIEDSQAGIKISPQDNNFYGLNDRLVTLTGTLDEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSY-PTSYNAVNYASNGGAGGRFPNNKRLYDTVDRR 240
           MRA DLI+SKLSEDPHY Q+M+ PFSY   +YN+++Y SN GAGG+F N+K         
Sbjct: 181 MRAIDLILSKLSEDPHYLQAMHAPFSYAAATYNSMSYPSN-GAGGKFQNHK--------- 240

Query: 241 ASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300
                 E+RSNS+TIGV+DGHIGLV+GRGGRNI+EISQ SGARIKISDRGDFMSGTTDRK
Sbjct: 241 ------EDRSNSVTIGVADGHIGLVLGRGGRNIMEISQLSGARIKISDRGDFMSGTTDRK 300

Query: 301 VTITGSQRAIRSAESMIMQKVAYASERHSD 330
           VTITGSQRAIR AESMIMQKVAYA++R  D
Sbjct: 301 VTITGSQRAIRQAESMIMQKVAYATDRVMD 314

[Close]

BLAST of CmoCh18G009230 vs. TrEMBL
Match: A0A067L9D4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01571 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.5e-132
Identity = 247/330 (74.85%), Postives = 289/330 (87.58%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAP KRSPPPPKSP S+++E+ TYIRFLVSNAAAGSVIGKGG+TI DF
Sbjct: 1   MESTESSYVSSPEAPRKRSPPPPKSPTSESIERPTYIRFLVSNAAAGSVIGKGGATITDF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRN+EFFPGT+DRIIM+SGT++E+LKA++L+LAKLL+ELH E+GDD++P+
Sbjct: 61  QSQSGARIQLSRNYEFFPGTSDRIIMISGTLDEVLKAVELILAKLLNELHTEDGDDIDPK 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVP+SSCG+IIGKGGS IKSFIE+SQAGIKISPQDNN+ G  DRLVTL+GT+EEQ
Sbjct: 121 TKVRLIVPNSSCGSIIGKGGSIIKSFIEESQAGIKISPQDNNFYGLNDRLVTLNGTLEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNG-GAGGRFPNNKRLYDTVDRR 240
           MRA DLI+SKL EDPHY+Q+M+ PFSY  +YN++NY  NG G GG+F N+K         
Sbjct: 181 MRAIDLILSKLVEDPHYSQTMHAPFSYAVAYNSMNYGPNGAGPGGKFQNSK--------- 240

Query: 241 ASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300
                 E+R+NS+TIG++D HIGLVVGRGGRNI+EISQ SGARIKISDRGDFMSGT DRK
Sbjct: 241 ------EDRTNSVTIGIADEHIGLVVGRGGRNIMEISQVSGARIKISDRGDFMSGTNDRK 300

Query: 301 VTITGSQRAIRSAESMIMQKVAYASERHSD 330
           +TITGSQRAIR+AE MI QKVAYASER  D
Sbjct: 301 ITITGSQRAIRAAEGMIRQKVAYASERGGD 315

[Close]

BLAST of CmoCh18G009230 vs. TAIR10
Match: AT5G04430.2 (AT5G04430.2 binding to TOMV RNA 1L (long form))

HSP 1 Score: 399.1 bits (1024), Expect = 3.0e-111
Identity = 218/350 (62.29%), Postives = 268/350 (76.57%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTES    SPE  AKRSP P  S  +D+ EK T+IRFLVSNAAAGSVIGKGGSTI +F
Sbjct: 1   MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           Q++SGARIQLSRN EFFPGTTDRIIM+SG+I E++  ++L+L KL SELHAE+G++VEPR
Sbjct: 61  QAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
            ++RL+VP+SSCG IIGKGG+TIKSFIE+S+AGIKISP DN + G +DRLVTLSGT EEQ
Sbjct: 121 RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSY---------------------PTSYNAVNYASN 240
           MRA DLI++KL+ED HY+Q+++ P+SY                        YN+VNYA N
Sbjct: 181 MRAIDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYALPSVATAGYNSVNYAPN 240

Query: 241 GGAGGRFPNNKRLYDTVDRRASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQAS 300
            G+GG++ N+K               EE S ++TIGV+D HIGLV+GRGGRNI+EI+Q +
Sbjct: 241 -GSGGKYQNHK---------------EEASTTVTIGVADEHIGLVLGRGGRNIMEITQMT 300

Query: 301 GARIKISDRGDFMSGTTDRKVTITGSQRAIRSAESMIMQKVAYASERHSD 330
           GARIKISDRGDFMSGTTDRKV+ITG QRAI+ AE+MI QKV  A+ER +D
Sbjct: 301 GARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKVDSATERTTD 334

[Close]

BLAST of CmoCh18G009230 vs. TAIR10
Match: AT1G33680.1 (AT1G33680.1 KH domain-containing protein)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-14
Identity = 62/194 (31.96%), Postives = 96/194 (49.48%), Query Frame = 1


Query: 33  KGTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTIN 92
           + T  R  V ++  G++IGKGG  +   Q  SGA+IQ+ R+ E  P +  R + + GT++
Sbjct: 230 QSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVS 289

Query: 93  EILKAMDLVLAKLLSELHAEEGDDVEPR---TKVRLIVPHSSCGAIIGKGGSTIKSFIED 152
            I KA  L+ A +++E+ A     +  R    ++ + VP    G IIG+GG TIK+    
Sbjct: 290 CIEKAEKLINA-VIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNMQTK 349

Query: 153 SQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPT 212
           S+A I++ PQ N    S +R V +SG   +   AT LI   + +D         P  Y  
Sbjct: 350 SRARIQLIPQ-NEGDASKERTVRISGDKRQIDIATALIKDVMYQD-------GRPSPYSG 409

Query: 213 SYNAVNYASNGGAG 224
            +N   Y   G  G
Sbjct: 410 GFNQQAYQPRGPGG 414

[Close]

BLAST of CmoCh18G009230 vs. TAIR10
Match: AT4G10070.1 (AT4G10070.1 KH domain-containing protein)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-13
Identity = 67/227 (29.52%), Postives = 102/227 (44.93%), Query Frame = 1


Query: 24  KSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDR 83
           KS    +  + T  R  V ++  G +IGKGG TI   Q  SGA+IQ+ R+ E  P +  R
Sbjct: 165 KSQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALR 224

Query: 84  IIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR-----------TKVRLIVPHSSC 143
            + + G++  I  A  L+ A +++E  A     +  R            ++ + VP+   
Sbjct: 225 PVEIIGSVACIESAEKLISA-VIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKV 284

Query: 144 GAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQMRATDLIVSKLS 203
           G IIG+GG TIK+    S A  ++ PQ     G  +R V +SG   +   ATD+I   ++
Sbjct: 285 GLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIATDMIKDVMN 344

Query: 204 EDPHYTQSMNYPFSYPTSYNAVNYASNGGA-----GGRFPNNKRLYD 235
           ++         P SY   YN   Y   G       G R P+    YD
Sbjct: 345 QNAR-------PSSYSGGYNQPAYRPQGPGGPPQWGSRGPHAPHPYD 383

[Close]

BLAST of CmoCh18G009230 vs. TAIR10
Match: AT5G15270.2 (AT5G15270.2 RNA-binding KH domain-containing protein)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11
Identity = 78/327 (23.85%), Postives = 144/327 (44.04%), Query Frame = 1


Query: 35  TYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGTINE- 94
           T  R+L      GSVIG+GG  +   ++ + ++I++    E  PG  +R+I +    +E 
Sbjct: 50  TVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIG---EAIPGCDERVITIYSPSDET 109

Query: 95  ----------------ILKAMDLVLAKLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIG 154
                           + +  D V+A    +  +E+  + E +   +L+VP    G I+G
Sbjct: 110 NAFGDGEKVLSPAQDALFRIHDRVVA---DDARSEDSPEGEKQVTAKLLVPSDQIGCILG 169

Query: 155 KGGSTIKSFIEDSQAGIKISPQDNNYMG--STDRLVTLSGTIEEQMRATDLIVSKLSEDP 214
           +GG  +++   ++ A I+I    N  +   ++D L+ +SG +    +A   I S+L E+P
Sbjct: 170 RGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENP 229

Query: 215 HYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRASE----IVQEERSNS 274
             +Q++    S    Y A +  S+ G G R      L  +  R A +    + Q  R++ 
Sbjct: 230 SRSQNL---LSSSGGYPAGSLMSHAG-GPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDP 289

Query: 275 ------LTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGS 332
                 + +     +I  V+G+GG  I ++ Q + A IK+       S T      IT S
Sbjct: 290 PATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDS-----SRTEGNDCLITIS 349

[Close]

BLAST of CmoCh18G009230 vs. TAIR10
Match: AT5G46190.1 (AT5G46190.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-11
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 1


Query: 37  IRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLS---RNHEFFPGTTDRIIMVSGTIN- 96
           I+ + S++  G VIGKGG TI   +  SG+ I+++    NH+      D +I V+ T + 
Sbjct: 319 IKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHD-----DDCVITVTATESP 378

Query: 97  EILKAMDLVLAKLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQA 156
           + LK+M +    LL E   +E +D   + K++L+V     G IIGK GS I    + ++A
Sbjct: 379 DDLKSMAVEAVLLLQEKINDEDED---KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKA 438

Query: 157 GIKISPQDN--NYMGSTDRLVTLSGTIEEQMRATDLIVSKLSED---PHYTQSMNYP 205
            I IS  +N        D LV +SG +     A   IV +L +D      T S N P
Sbjct: 439 DIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRNQP 487

[Close]

BLAST of CmoCh18G009230 vs. NCBI nr
Match: gi|449449385|ref|XP_004142445.1| (PREDICTED: RNA-binding protein Nova-2 isoform X1 [Cucumis sativus])

HSP 1 Score: 577.4 bits (1487), Expect = 1.8e-161
Identity = 306/327 (93.58%), Postives = 314/327 (96.02%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEK TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+LVLAKLLSELHAEEGDDVEPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASN-GGAGGRFPNNKRLYDTVDRR 240
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NA+NY SN GG GGRF NNK      D R
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNGGGTGGRFQNNK-----PDTR 240

Query: 241 ASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300
           +SEIVQEER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK
Sbjct: 241 SSEIVQEERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300

Query: 301 VTITGSQRAIRSAESMIMQKVAYASER 327
           VTITGSQRAIR+AESMI+QKVAYASER
Sbjct: 301 VTITGSQRAIRAAESMILQKVAYASER 322

[Close]

BLAST of CmoCh18G009230 vs. NCBI nr
Match: gi|659091924|ref|XP_008446807.1| (PREDICTED: RNA-binding protein Nova-2 [Cucumis melo])

HSP 1 Score: 566.6 bits (1459), Expect = 3.1e-158
Identity = 299/326 (91.72%), Postives = 306/326 (93.87%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAPAKRSPPPPKSPNSDNM+K TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMDKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+LVLAKLLSELHAEEGDDVEPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNA+NY SNGG GGRF NNK          
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAMNYGSNGGTGGRFQNNK---------- 240

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
                EER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV
Sbjct: 241 -----EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300

Query: 301 TITGSQRAIRSAESMIMQKVAYASER 327
           TITGSQRAIR+AESMI+QKVAYASER
Sbjct: 301 TITGSQRAIRAAESMILQKVAYASER 311

[Close]

BLAST of CmoCh18G009230 vs. NCBI nr
Match: gi|778706457|ref|XP_011655857.1| (PREDICTED: RNA-binding protein Nova-2 isoform X2 [Cucumis sativus])

HSP 1 Score: 561.6 bits (1446), Expect = 9.9e-157
Identity = 299/327 (91.44%), Postives = 306/327 (93.58%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEK TYIRFLVSNAAAGSVIGKGGSTINDF
Sbjct: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKATYIRFLVSNAAAGSVIGKGGSTINDF 60

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSG+INEILKAM+LVLAKLLSELHAEEGDDVEPR
Sbjct: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEILKAMELVLAKLLSELHAEEGDDVEPR 120

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYM STDRLVTLSGTIEEQ
Sbjct: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMASTDRLVTLSGTIEEQ 180

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASN-GGAGGRFPNNKRLYDTVDRR 240
           MRATDLIVSKLSEDPHYTQSMNYPFSYPTS+NA+NY SN GG GGRF NNK         
Sbjct: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSNGGGTGGRFQNNK--------- 240

Query: 241 ASEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300
                 EER+NSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK
Sbjct: 241 ------EERNNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRK 300

Query: 301 VTITGSQRAIRSAESMIMQKVAYASER 327
           VTITGSQRAIR+AESMI+QKVAYASER
Sbjct: 301 VTITGSQRAIRAAESMILQKVAYASER 312

[Close]

BLAST of CmoCh18G009230 vs. NCBI nr
Match: gi|1009119988|ref|XP_015876679.1| (PREDICTED: protein BTR1 isoform X5 [Ziziphus jujuba])

HSP 1 Score: 511.5 bits (1316), Expect = 1.2e-141
Identity = 270/329 (82.07%), Postives = 291/329 (88.45%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAP KRSPPPPKSP SD+MEK TY++FLVSNAAAGSVIGKGG+TI DF
Sbjct: 18  MESTESSYVSSPEAPRKRSPPPPKSPTSDSMEKPTYLKFLVSNAAAGSVIGKGGATITDF 77

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEI+KAMDL+LAKLLSELH EE DD E R
Sbjct: 78  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEIIKAMDLILAKLLSELHTEESDDAELR 137

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVP+SSCG IIGKGGSTIKSFIEDSQAGIKISPQDNNY G  DRLVTL+GT+EEQ
Sbjct: 138 TKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQAGIKISPQDNNYFGLNDRLVTLTGTLEEQ 197

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           +RA DLI+SKL+EDPHY QSMN PFSYP  YNA++Y  N GAGG+F N K          
Sbjct: 198 LRAIDLIISKLAEDPHYVQSMNAPFSYPAPYNAMSYGPN-GAGGKFQNTK---------- 257

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
               QE+R+NS+TIGV+DGHIGLVVGRGGRNI+EISQASGARIKISDRGDFMSGTTDRKV
Sbjct: 258 ----QEDRNNSVTIGVADGHIGLVVGRGGRNIMEISQASGARIKISDRGDFMSGTTDRKV 317

Query: 301 TITGSQRAIRSAESMIMQKVAYASERHSD 330
           TITGSQRAIR+AESMIMQKVAYASER  D
Sbjct: 318 TITGSQRAIRAAESMIMQKVAYASERVMD 331

[Close]

BLAST of CmoCh18G009230 vs. NCBI nr
Match: gi|1009119990|ref|XP_015876680.1| (PREDICTED: protein BTR1 isoform X6 [Ziziphus jujuba])

HSP 1 Score: 508.8 bits (1309), Expect = 7.6e-141
Identity = 269/329 (81.76%), Postives = 290/329 (88.15%), Query Frame = 1


Query: 1   MESTESSYVSSPEAPAKRSPPPPKSPNSDNMEKGTYIRFLVSNAAAGSVIGKGGSTINDF 60
           MESTESSYVSSPEAP KRSPPPPKSP SD+MEK TY++FLVSNAAAGSVIGKGG+TI DF
Sbjct: 18  MESTESSYVSSPEAPRKRSPPPPKSPTSDSMEKPTYLKFLVSNAAAGSVIGKGGATITDF 77

Query: 61  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEILKAMDLVLAKLLSELHAEEGDDVEPR 120
           QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEI+KAMDL+LAKLLSELH EE DD E R
Sbjct: 78  QSQSGARIQLSRNHEFFPGTTDRIIMVSGTINEIIKAMDLILAKLLSELHTEESDDAELR 137

Query: 121 TKVRLIVPHSSCGAIIGKGGSTIKSFIEDSQAGIKISPQDNNYMGSTDRLVTLSGTIEEQ 180
           TKVRLIVP+SSCG IIGKGGSTIKSFIEDSQAGIKISPQDNNY G  DRLVTL+GT+EEQ
Sbjct: 138 TKVRLIVPNSSCGGIIGKGGSTIKSFIEDSQAGIKISPQDNNYFGLNDRLVTLTGTLEEQ 197

Query: 181 MRATDLIVSKLSEDPHYTQSMNYPFSYPTSYNAVNYASNGGAGGRFPNNKRLYDTVDRRA 240
           +RA DLI+SKL+EDPHY QSMN PFSYP  YNA++Y  N GAGG+F N K          
Sbjct: 198 LRAIDLIISKLAEDPHYVQSMNAPFSYPAPYNAMSYGPN-GAGGKFQNTK---------- 257

Query: 241 SEIVQEERSNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKV 300
                E+R+NS+TIGV+DGHIGLVVGRGGRNI+EISQASGARIKISDRGDFMSGTTDRKV
Sbjct: 258 -----EDRNNSVTIGVADGHIGLVVGRGGRNIMEISQASGARIKISDRGDFMSGTTDRKV 317

Query: 301 TITGSQRAIRSAESMIMQKVAYASERHSD 330
           TITGSQRAIR+AESMIMQKVAYASER  D
Sbjct: 318 TITGSQRAIRAAESMIMQKVAYASERVMD 330

The following BLAST results are available for this feature:

BLAST of CmoCh18G009230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTR1_ARATH	1.0e-113	66.26	Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1	[more]
NOVA1_RAT	1.6e-26	35.21	RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1	[more]
NOVA2_HUMAN	2.2e-26	37.21	RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1	[more]
NOVA1_MACFA	4.8e-26	32.64	RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1	[more]
NOVA1_MOUSE	1.4e-22	30.15	RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2	[more]

BLAST of CmoCh18G009230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWP6_CUCSA	6.9e-157	91.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G621940 PE=4 SV=1	[more]
A0A061FNH4_THECC	1.1e-133	77.51	Binding to TOMV RNA 1L (Long form) isoform 1 OS=Theobroma cacao GN=TCM_043373 PE...	[more]
D7TM15_VITVI	9.1e-133	78.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05360 PE=4 SV=...	[more]
A0A061FPQ0_THECC	2.7e-132	77.27	Binding to TOMV RNA 1L (Long form) isoform 6 OS=Theobroma cacao GN=TCM_043373 PE...	[more]
A0A067L9D4_JATCU	3.5e-132	74.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01571 PE=4 SV=1	[more]

BLAST of CmoCh18G009230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04430.2	3.0e-111	62.29	binding to TOMV RNA 1L (long form)	[more]
AT1G33680.1	4.5e-14	31.96	KH domain-containing protein	[more]
AT4G10070.1	2.9e-13	29.52	KH domain-containing protein	[more]
AT5G15270.2	3.5e-11	23.85	RNA-binding KH domain-containing protein	[more]
AT5G46190.1	6.0e-11	32.77	RNA-binding KH domain-containing protein	[more]

BLAST of CmoCh18G009230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449385\|ref\|XP_004142445.1\|	1.8e-161	93.58	PREDICTED: RNA-binding protein Nova-2 isoform X1 [Cucumis sativus]	[more]
gi\|659091924\|ref\|XP_008446807.1\|	3.1e-158	91.72	PREDICTED: RNA-binding protein Nova-2 [Cucumis melo]	[more]
gi\|778706457\|ref\|XP_011655857.1\|	9.9e-157	91.44	PREDICTED: RNA-binding protein Nova-2 isoform X2 [Cucumis sativus]	[more]
gi\|1009119988\|ref\|XP_015876679.1\|	1.2e-141	82.07	PREDICTED: protein BTR1 isoform X5 [Ziziphus jujuba]	[more]
gi\|1009119990\|ref\|XP_015876680.1\|	7.6e-141	81.76	PREDICTED: protein BTR1 isoform X6 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046719	regulation by virus of viral protein levels in host cell
biological_process	GO:0008380	RNA splicing
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G009230.1	CmoCh18G009230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 119..192 score: 5.3E-11coord: 248..321 score: 2.1E-13coord: 33..106 score: 1.3
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 251..321 score: 2.4E-18coord: 120..195 score: 1.4E-19coord: 36..107 score: 3.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 37..102 score: 9.8E-14coord: 123..188 score: 1.9E-12coord: 253..318 score: 1.1
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 120..187 score: 15.556coord: 249..316 score: 17.359coord: 34..101 score: 16
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 251..323 score: 2.73E-16coord: 35..108 score: 2.19E-17coord: 122..196 score: 5.99
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 13..331 score: 1.4E
None	No IPR available	PANTHER	PTHR10288:SF142	PASILLA, ISOFORM D	coord: 13..331 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G009230	Cucsa.308810	Cucumber (Gy14) v1	cgycmoB0847
CmoCh18G009230	CmaCh18G009220	Cucurbita maxima (Rimu)	cmacmoB406
CmoCh18G009230	CmaCh04G013970	Cucurbita maxima (Rimu)	cmacmoB706
CmoCh18G009230	Cla020523	Watermelon (97103) v1	cmowmB365
CmoCh18G009230	Csa5G621940	Cucumber (Chinese Long) v2	cmocuB406
CmoCh18G009230	MELO3C012385	Melon (DHL92) v3.5.1	cmomeB344
CmoCh18G009230	ClCG05G021420	Watermelon (Charleston Gray)	cmowcgB358
CmoCh18G009230	CSPI05G26670	Wild cucumber (PI 183967)	cmocpiB411
CmoCh18G009230	Lsi04G001140	Bottle gourd (USVL1VR-Ls)	cmolsiB364
CmoCh18G009230	Cp4.1LG09g03910	Cucurbita pepo (Zucchini)	cmocpeB376
CmoCh18G009230	Cp4.1LG01g14480	Cucurbita pepo (Zucchini)	cmocpeB392
CmoCh18G009230	MELO3C012385.2	Melon (DHL92) v3.6.1	cmomedB395
CmoCh18G009230	CsaV3_5G035820	Cucumber (Chinese Long) v3	cmocucB0487
CmoCh18G009230	Cla97C05G103140	Watermelon (97103) v2	cmowmbB403
CmoCh18G009230	Bhi07G000680	Wax gourd	cmowgoB0540
CmoCh18G009230	CsGy5G026100	Cucumber (Gy14) v2	cgybcmoB603
CmoCh18G009230	Carg01930	Silver-seed gourd	carcmoB1135
CmoCh18G009230	Carg20720	Silver-seed gourd	carcmoB0654

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G009230	CmoCh04G014710	Cucurbita moschata (Rifu)	cmocmoB336

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G009230	Wax gourd	cmowgoB0511
CmoCh18G009230	Cucurbita moschata (Rifu)	cmocmoB345
CmoCh18G009230	Watermelon (Charleston Gray)	cmowcgB369
CmoCh18G009230	Watermelon (97103) v1	cmowmB357
CmoCh18G009230	Cucurbita pepo (Zucchini)	cmocpeB401
CmoCh18G009230	Bottle gourd (USVL1VR-Ls)	cmolsiB381
CmoCh18G009230	Cucumber (Gy14) v2	cgybcmoB192
CmoCh18G009230	Cucumber (Gy14) v2	cgybcmoB752
CmoCh18G009230	Melon (DHL92) v3.6.1	cmomedB419
CmoCh18G009230	Silver-seed gourd	carcmoB0938