CmaCh04G012770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant/F8L15-130 protein
LocationCma_Chr04 : 6520952 .. 6523024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATCTTATTGGCAGTGTATGTTAGTTCTTATTGCCTTAGAATGATTTTCCCTATCAATTATTATTTTCCTTGAGCTGCTTAACCTTTATAATGATCATCTTCTATTTTCCCCCATTCTCTTGCATCCATGAACGACTTTTAACTTGTAGCCTATATTACTTACATTACAAGTAAACATGCAGGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTGTAGGTTCTTCATACACCTTTGAACCTAATTGATTTATACTTCGTTAAAGTGCCTTACCTTAATTATTTGAAGTCAATAACATGTTTCTTTTCACCTCTTACGCAAATACAAATTAATTCTTCAGTTATTTTCTTTACTTGTGTATTGGAAAGAGGGAAGGTCTTGGCCAGTTTTTCAATACTTCTACGTATGATATTTTGTCTTGTGGGGCTAATATTTACATGATGAACGTACTGCATAACTACTTAATTATCTTGTTAGCTTTATATGGTTGAAAGTAGGCACCCTAGTTTGGAGGTACTCTGGATCACAGGCTCAGACTATTGTAAAACTGAAATTTGGTCAATGTTAAAAACGCTTCCTTTTATTTTGCGCAAAGGAAAAACACGTTCAATTGCAAATTGATTTGGTTTATTCGAAGGCTGTTTAAATATCCTAGAAACATTATATTCTCTCCATTTTTTTGGCTGATTCCCAAAAGATAGGGACTGCAAAACCAACCCGGTTAGGTGGTCAGTCTCTAACACCTTTTCTTAATGACTTAATGGAACCAAATCTATGGCTGCTGCGTGAATTGCAAAATTTTTGGATTAAATTTTTTCATTGAATTGTTACTCAAACTCAAACAACAAAAAATTGCAGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGTACGACTCTTGAAATTAACTGTGTTCCATTATTCGACGTTAATTTGCATGCTTCTCTGCATGGAATTCAAACAAGTTGTGATAATTTATGGCAGGGTTGACCTAGGTACGTCTGATTATTTCGCCATTGATGTACTATTGAACTGCTGGACTGTTCTGAGCTCATAGTAGGTACTCATCCTATCTAATTGAGGAACTTGTTATTTTTTACTTTGACATGCAGATATTTAGCTATCCAATAAGTCATCTTTGGAGGACGTCGAATGAGCAATTGGGAAGAAGGGGTGATAAGCCCCGAGAATGGTACGAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCGATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGACTAGTAGGAAGATTTTAGGCTTAGATCAGGTAGTTTGAGAATTTGCATTCAGAAAATCAAAAAATGGCCCACACGCTTTCCTTTAAGAAAGGTAATAACAATTAGACATGAGAATCGTGGAGGGAGGATTGAACCAAAAAAAGTAGCCCAGCAAGTAATGTCTTAGCTAAGTTAAGTTGTGAAAATCTTCGTTCTTATGCCCACCTCAATTTGTTAGGGAAAAAAAATGTCCCACAGCCATAGTTAAAATATATATATCATCCATAGGGAGGTTAAAGGCTTAAATTCTCATCCATATGTTTCATTAAATTAAAATGTCTTACCGGAAAAGAGAAAGAACCCAAGGTTAAAGGTAATTGGCCTTCCTCTGTTGGATCAAGGATTTCTATGTTGTAAAATTGGGACTTTCATTCTAAAACAAAAACGATTAGAGGCCCTCATGGTCATGAGAATCCTTGAACAGGACGGTCTGTGAATTTTATTGCTAGTTTTTTAGTATAATAAATGGGATAAAGAGGATTTAAACATATGCATCATGCTTATCACTCCATTATATTATTCTTCTGGCCCCCAGCCCCAAAAAAGTTGTTTCAGTACAGGTCAGGGTATCAAATAGCAAAACATATTATAAGTAGATTTAATTATTGTATTGATTTAGTCCCC

mRNA sequence

ATGTTGATCTTATTGGCAGTGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGGTTGACCTAGATATTTAGCTATCCAATAAGTCATCTTTGGAGGACGTCGAATGAGCAATTGGGAAGAAGGGGTGATAAGCCCCGAGAATGGTACGAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCGATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGACTAGTAGGAAGATTTTAGGCTTAGATCAGGTAGTTTGAGAATTTGCATTCAGAAAATCAAAAAATGGCCCACACGCTTTCCTTTAAGAAAGGTAATAACAATTAGACATGAGAATCGTGGAGGGAGGATTGAACCAAAAAAAGTAGCCCAGCAAGTAATGTCTTAGCTAAGTTAAGTTGTGAAAATCTTCGTTCTTATGCCCACCTCAATTTGTTAGGGAAAAAAAATGTCCCACAGCCATAGTTAAAATATATATATCATCCATAGGGAGGTTAAAGGCTTAAATTCTCATCCATATGTTTCATTAAATTAAAATGTCTTACCGGAAAAGAGAAAGAACCCAAGGTTAAAGGTAATTGGCCTTCCTCTGTTGGATCAAGGATTTCTATGTTGTAAAATTGGGACTTTCATTCTAAAACAAAAACGATTAGAGGCCCTCATGGTCATGAGAATCCTTGAACAGGACGGTCTGTGAATTTTATTGCTAGTTTTTTAGTATAATAAATGGGATAAAGAGGATTTAAACATATGCATCATGCTTATCACTCCATTATATTATTCTTCTGGCCCCCAGCCCCAAAAAAGTTGTTTCAGTACAGGTCAGGGTATCAAATAGCAAAACATATTATAAGTAGATTTAATTATTGTATTGATTTAGTCCCC

Coding sequence (CDS)

ATGTTGATCTTATTGGCAGTGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGGTTGACCTAGATATTTAG

Protein sequence

MLILLAVLTSRGMSLVDWRTFNSSNFWRIQPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDLDI
Homology
[Close]
BLAST of CmaCh04G012770 vs. TrEMBL
Match: A0A0D2RQU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G214600 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-10
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI----PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN   +Q  +A     PLY+ADKGF VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 FNSSN---LQVGNASMEYDPLYDADKGFNVMPSSFHDISDVEFQDNWGRVWVDL 262

[Close]
BLAST of CmaCh04G012770 vs. TrEMBL
Match: A0A0B0NUC6_GOSAR (Structural maintenance of chromosomes 4-like protein OS=Gossypium arboreum GN=F383_04192 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-10
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI----PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN   +Q  +A     PLY+ADKGF VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 FNSSN---LQVGNASMEYDPLYDADKGFNVMPSSFHDISDVEFQDNWGRVWVDL 262

[Close]
BLAST of CmaCh04G012770 vs. TrEMBL
Match: B9HUZ6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s26180g PE=4 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-10
Identity = 35/51 (68.63%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI-PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           PLY+ADKGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 217 FNSSNLQLANSSMEYDPLYDADKGFKVMPSSFHDISDVEFQDNWGRVWVDL 267

[Close]
BLAST of CmaCh04G012770 vs. TrEMBL
Match: A0A068V8Y6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018256001 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-10
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI-PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           PLY+ADKGF+VM  SFHDISDVEFQDNWG +WVDL
Sbjct: 156 FNSSNLQLANSSMEYDPLYDADKGFKVMPSSFHDISDVEFQDNWGRIWVDL 206

[Close]
BLAST of CmaCh04G012770 vs. TrEMBL
Match: A0A151RI45_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_036360 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-10
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI-PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           PLY+ADKGF+VM  SFHDISD+EFQDNWG VWVDL
Sbjct: 186 FNSSNLQLANSSMEYDPLYDADKGFKVMPSSFHDISDIEFQDNWGRVWVDL 236

[Close]
BLAST of CmaCh04G012770 vs. TAIR10
Match: AT5G08400.1 (AT5G08400.1 Protein of unknown function (DUF3531))

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-12
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 

Query: 36  PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           PLY+A+KGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 245 PLYDAEKGFKVMPSSFHDISDVEFQDNWGRVWVDL 279

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: gi|449458716|ref|XP_004147093.1| (PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI-PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 206 FNSSNLQLANSSMEYNPVYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 256

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: gi|659090247|ref|XP_008445913.1| (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI-PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 206 FNSSNLQLANSSMEYNPVYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 256

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: gi|720060625|ref|XP_010274923.1| (PREDICTED: uncharacterized protein LOC104610134 [Nelumbo nucifera])

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 21  FNSSNFWRIQP-WSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN       +   PLY+ADKGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 220 FNSSNLQLANSSFEYNPLYDADKGFKVMPSSFHDISDVEFQDNWGRVWVDL 270

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: gi|823160087|ref|XP_012479884.1| (PREDICTED: uncharacterized protein LOC105795007 [Gossypium raimondii])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI----PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN   +Q  +A     PLY+ADKGF VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 FNSSN---LQVGNASMEYDPLYDADKGFNVMPSSFHDISDVEFQDNWGRVWVDL 262

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: gi|728836789|gb|KHG16232.1| (Structural maintenance of chromosomes 4 -like protein [Gossypium arboreum])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-10
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 21  FNSSNFWRIQPWSAI----PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN   +Q  +A     PLY+ADKGF VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 FNSSN---LQVGNASMEYDPLYDADKGFNVMPSSFHDISDVEFQDNWGRVWVDL 262

The following BLAST results are available for this feature:
BLAST of CmaCh04G012770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2RQU8_GOSRA4.3e-1068.52Uncharacterized protein OS=Gossypium raimondii GN=B456_005G214600 PE=4 SV=1[more]
A0A0B0NUC6_GOSAR4.3e-1068.52Structural maintenance of chromosomes 4-like protein OS=Gossypium arboreum GN=F3... [more]
B9HUZ6_POPTR5.6e-1068.63Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s26180g PE=4 SV=2[more]
A0A068V8Y6_COFCA7.4e-1066.67Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018256001 PE=4 SV=1[more]
A0A151RI45_CAJCA7.4e-1066.67Uncharacterized protein OS=Cajanus cajan GN=KK1_036360 PE=4 SV=1[more]
BLAST of CmaCh04G012770 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08400.11.8e-1282.86 Protein of unknown function (DUF3531)[more]
BLAST of CmaCh04G012770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458716|ref|XP_004147093.1|3.6e-1068.63PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus][more]
gi|659090247|ref|XP_008445913.1|3.6e-1068.63PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo][more]
gi|720060625|ref|XP_010274923.1|4.7e-1068.63PREDICTED: uncharacterized protein LOC104610134 [Nelumbo nucifera][more]
gi|823160087|ref|XP_012479884.1|6.2e-1068.52PREDICTED: uncharacterized protein LOC105795007 [Gossypium raimondii][more]
gi|728836789|gb|KHG16232.1|6.2e-1068.52Structural maintenance of chromosomes 4 -like protein [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021920DUF3531
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012770.1CmaCh04G012770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021920Protein of unknown function DUF3531PFAMPF12049DUF3531coord: 35..70
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G012770Cla022886Watermelon (97103) v1cmawmB728
CmaCh04G012770ClCG11G012820Watermelon (Charleston Gray)cmawcgB621
CmaCh04G012770CmoCh04G013470Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012770Bhi07G000941Wax gourdcmawgoB0892
CmaCh04G012770Carg02039Silver-seed gourdcarcmaB1170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012770Wild cucumber (PI 183967)cmacpiB733
CmaCh04G012770Cucumber (Chinese Long) v2cmacuB726
CmaCh04G012770Melon (DHL92) v3.5.1cmameB633
CmaCh04G012770Melon (DHL92) v3.5.1cmameB652
CmaCh04G012770Cucurbita pepo (Zucchini)cmacpeB697
CmaCh04G012770Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G012770Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012770Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G012770Cucumber (Gy14) v2cgybcmaB650
CmaCh04G012770Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012770Silver-seed gourdcarcmaB1014
CmaCh04G012770Silver-seed gourdcarcmaB1015
CmaCh04G012770Cucumber (Chinese Long) v3cmacucB0863
CmaCh04G012770Watermelon (97103) v2cmawmbB725
CmaCh04G012770Cucurbita maxima (Rimu)cmacmaB407
CmaCh04G012770Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G012770Cucumber (Gy14) v1cgycmaB0779
CmaCh04G012770Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G012770Cucurbita moschata (Rifu)cmacmoB713