Carg02039 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02039
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Structural maintenance of chromosomes-like protein, putative (DUF3531)
Location	Cucurbita_argyrosperma_scaffold_003 : 1852924 .. 1856265 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGGTATATCGGTCTAGCATATATTCATCTTCTTCATTTGATTTTTTGATTATCGATTTGTTGTAATTATACTTGCTCATTCACTACGTCATTTCTTGTTTGCACTTGTCTTATTGTGTCAGTTTTTAGAACGTATTGTTCAGATTTTTTTTCACTTCGGTTTGAGAGACGAGAAACCTTAACAAAATGCTTGAAACTAGAGTGTAGCATATTCGCAATTTAGGATTTAGTGTTTCCTTGATATATTCTTAATTCGTCGGTATGACGTCTGAGAAGATAAGATTCGCCTTATTATTTTCTCTCATTAACAAGCATCGAGTAGGATTGTCGTCATGTATCTTGTTGATATAGTTGATTATGGTGCATACTGTCGTGCATGGATGTGTCATATCATGGAAACTTGAAAAGTGCTAGGTAGCATTCTTAACTCAAGAAGGAGCAATTTCTGGATGATTGACGGAACTATTTTATTAGTTGTCGTTTCATAAGCCGCTCATTTCACTTCTATTTAAGTATTGTCTCTTCAAAACATTTTGCTGAAGATCTCATATGACTAGTAATTCGTACAGAACTATCTTGTAAATAAACTTATTTCACATCTATTGTCAAGCCCAAGCCGTTAACTTCTTATTAGAGTATTAAAACCTGTTGAGTCTCATGCAGTGAACATTGATTGCGTTCCCGTAGAACTGATGAACGGAATAAGCTTCTTTCTGTGAGGCATTAACCAGAAGAGTAAAAACTTCTAAAACTTTTCATGCAATTCCTGTTAAATAATGGTGTTTCCTTTTCTTCGTACATAATTACATCCTCCAATTTGATTGGGGCAGGTTGAAGAGAGTTCGGAGGAAGGTTAGAGATTTCCAAAAAACAGGTTTCATCCTTGTTAGAGAGTAATCTATTTAACAAATAGCCCCTTGTTTACTGTCCTTTTTTGTCCCCACTGGTATAACCTTATTTCTGGTGCCAACGTCAAAGCTTAAGCCTCCATCATAAAAGAAAAAATTTTATCCCCATTTCCAATTCCATTTTTCCAGCCTTCGACCACTACTCTTTAAATTGATTTCATTCTTCTCAACTTCTCAGGTTTCAAATTTGTTTTGAAGCAAACGTTTAAGGCCCAAAAGGTTTCGGGTCCTGGGTTCTATTAGTCCAGCAAGTTCTCTTTTAAAGCAGCTGTATCTCAAGTAAATACGTTTTTCTTATGGCTTCCACACATGATAGAATTTAGTTCCAACTTTGGGTTTCCCAAATGTGCAAGTCATCAATTTTTTGATTGTATTCTTTTACATTCTTTTGATACGTTGAAGAATGATCGCATATTGTTACTGCTTTACGGGCAATACCATGGTTATAGATGCTTTTCTTGTCTTCTGAGCTAATTTGGGGATGGGAATATGCATTCTGATTGTTTATTTATATGCTCATGAGTGTACTAGTTAACTAGATGACGTATATTGATGGAGGTTGGTCATAATTTACGGGCAATACCATGGTTAAGTTTTTTTTTTTTTTTTCCTTTTTTTTGGGGGTAAATTTGGTAGTAGTCCAGTGCAGAACTGCACTATCCCAGGACACAGTAATATTGGAGTTCTGCTATACATTTGTTGACATCTTTGAGCATCCTGGTCCTCGTTTCTTGATTAGCTGATTTTTAAATTTAACCATTGTTTTTTATGCACTTACATTTCATGCCTGTTCGCTGCATGTCTTGGAAATTGTTCAGTCATCCTAATGAAACATGAGGAAGAGTAAACCCCGTAGTCACATATTACTAAGCTGCTAATTAAGAGAAAATTGTTCATATTATCATCAATGTGGTGACAAATTGTTCATTAACTTTTCAGACGTTTGAACATTACCATTTTAAGTTACTGACCATCCTTTTGCCTCTGTTTTTCCGTACAGCTTCAATCCTCTTGGTTCCTACATATGTTTGAGCTGATTGGATCACCATCCGATTGAGATGTTGATCTTATTGGCAGTGTATGTTAGTTCTTATTGCCTTAGAATGATTTTCCCTGTCAATTATTATTTTCCTTGAGCTGCTTAAACTTTATAATGATCATCTTCTATTTTCCCCCATTCTCTTGCATCCATGAAGGACTTTTAACTTGTAGCCTATATTACTTACATTACAAGTAAACATGTAGGTTATCCAGTCCTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTGTAGGTTCTTCATACATCTTTGAACCTAATTGATTTATACTTCGTTAGAGTGCCTTACCTTAATTATTTGAAGTCAATAACATGTTTTTTTTTTTCACCTCTTACGCAAATACAAATTAATTCTTCAGTTATTTTCTTTACTTGTGTATTGATATTTTGTCTTGTGGGGATAATATTTACATGATGAACGTACTGCATAACTACTAAATTATCTTGTTAGCTTTATATGGTTGAAAGTAGGCACCCTAGTTTGGAGGTACTCTGGATCACAGGCTCAGACTATTGTAAAACTGAACTTTGGTCAATGTTAAAAACGCTTACTTTTATTTTGGGCAAAGGAAAAACACGTTCAATTGCAAATTGATTTGGTTTATTCGAAGGCTGTTTAAATATCCTACAAACGTTATATTCTCTGCATTTTTTTGGCTGATTCCCAAAAGATAGGGACGGCAAAACCAACCCGGTTAGGTGGTCAGTCTCTAACACCTTTTCTTAATGACTTAATGGGACCAAATCTATGGCTGCTGCGTGAATTGCAAAATTTTTGGATTAAATTTTTTCATTGAATTGTTACTCAAACTCAAACAACAAATAATTGCAGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGGTTTGGTAAGACTTCTTGAAATTAACTGTGTTCCATTATTCGACGTTAATTTGTATGCTTCTCTGCATGGAATTCAAACAAGTTGTGATAATTTATGGCAGGGTTGACCTAGGTACGTCTGATTATTTCGCCATTGATGCACTATTGAACTGCTGGACTGTTCTGAGCTCATAGTAGGTACTCATCCTATCTAATTGAGGAACTTGTTATTTTTTACTTTGACATGCAGATATTTAGCCATCCAATAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAG

mRNA sequence

ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGATATTTAGCCATCCAATAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAG

Coding sequence (CDS)

ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGATATTTAGCCATCCAATAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAG

Protein sequence

MPAKTRRNFALFLAIASAIRGNEEQDKGFEVMPPSFHDISDVEFQDNWGRIFSHPISHLWRTSYERLGRRDGKPREWYKYFKIFLL

Homology

[Close]

BLAST of Carg02039 vs. NCBI nr
Match: XP_012833090.1 (PREDICTED: uncharacterized protein LOC105953963 [Erythranthe guttata] >EYU40934.1 hypothetical protein MIMGU_mgv1a010311mg [Erythranthe guttata])

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           ++DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 231 DEDKGFKVMPSSFHDISDVEFQDNWGRVW 259

[Close]

BLAST of Carg02039 vs. NCBI nr
Match: XP_013450693.1 (uncharacterized protein LOC25495080 [Medicago truncatula] >KEH24720.1 plant/F8L15-130 protein [Medicago truncatula])

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 216 DSDKGFKVMPSSFHDISDVEFQDNWGRVW 244

[Close]

BLAST of Carg02039 vs. NCBI nr
Match: KEH24721.1 (plant/F8L15-130 protein [Medicago truncatula])

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 216 DSDKGFKVMPSSFHDISDVEFQDNWGRVW 244

[Close]

BLAST of Carg02039 vs. NCBI nr
Match: CDP16398.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 175 DADKGFKVMPSSFHDISDVEFQDNWGRIW 203

[Close]

BLAST of Carg02039 vs. NCBI nr
Match: XP_019450058.1 (PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW07611.1 hypothetical protein TanjilG_31170 [Lupinus angustifolius])

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 202 DADKGFKVMPSSFHDISDVEFQDNWGRIW 230

[Close]

BLAST of Carg02039 vs. TAIR10
Match: AT5G08400.1 (Protein of unknown function (DUF3531))

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + +KGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 248 DAEKGFKVMPSSFHDISDVEFQDNWGRVW 276

[Close]

BLAST of Carg02039 vs. TrEMBL
Match: tr|A0A022RLP1|A0A022RLP1_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a010311mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           ++DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 231 DEDKGFKVMPSSFHDISDVEFQDNWGRVW 259

[Close]

BLAST of Carg02039 vs. TrEMBL
Match: tr|A0A072UG11|A0A072UG11_MEDTR (Plant/F8L15-130 protein OS=Medicago truncatula OX=3880 GN=25495080 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 216 DSDKGFKVMPSSFHDISDVEFQDNWGRVW 244

[Close]

BLAST of Carg02039 vs. TrEMBL
Match: tr|A0A072U5T5|A0A072U5T5_MEDTR (Plant/F8L15-130 protein OS=Medicago truncatula OX=3880 GN=25495080 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 216 DSDKGFKVMPSSFHDISDVEFQDNWGRVW 244

[Close]

BLAST of Carg02039 vs. TrEMBL
Match: tr|B7FL25|B7FL25_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 216 DSDKGFKVMPSSFHDISDVEFQDNWGRVW 244

[Close]

BLAST of Carg02039 vs. TrEMBL
Match: tr|A0A068V8Y6|A0A068V8Y6_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018256001 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 24  EQDKGFEVMPPSFHDISDVEFQDNWGRIF 53
           + DKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 175 DADKGFKVMPSSFHDISDVEFQDNWGRIW 203

The following BLAST results are available for this feature:

BLAST of Carg02039 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_012833090.1	1.6e-05	79.31	PREDICTED: uncharacterized protein LOC105953963 [Erythranthe guttata] >EYU40934....	[more]
XP_013450693.1	2.8e-05	79.31	uncharacterized protein LOC25495080 [Medicago truncatula] >KEH24720.1 plant/F8L1...	[more]
KEH24721.1	2.8e-05	79.31	plant/F8L15-130 protein [Medicago truncatula]	[more]
CDP16398.1	2.8e-05	82.76	unnamed protein product [Coffea canephora]	[more]
XP_019450058.1	2.8e-05	82.76	PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW0761...	[more]

BLAST of Carg02039 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08400.1	1.9e-08	75.86	Protein of unknown function (DUF3531)	[more]

BLAST of Carg02039 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02039 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A022RLP1\|A0A022RLP1_ERYGU	1.1e-05	79.31	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a010311mg PE...	[more]
tr\|A0A072UG11\|A0A072UG11_MEDTR	1.9e-05	79.31	Plant/F8L15-130 protein OS=Medicago truncatula OX=3880 GN=25495080 PE=4 SV=1	[more]
tr\|A0A072U5T5\|A0A072U5T5_MEDTR	1.9e-05	79.31	Plant/F8L15-130 protein OS=Medicago truncatula OX=3880 GN=25495080 PE=4 SV=1	[more]
tr\|B7FL25\|B7FL25_MEDTR	1.9e-05	79.31	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
tr\|A0A068V8Y6\|A0A068V8Y6_COFCA	1.9e-05	82.76	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018256001 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02039-RA	Carg02039-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02039	CmaCh04G012770	Cucurbita maxima (Rimu)	carcmaB1170
Carg02039	CmoCh04G013470	Cucurbita moschata (Rifu)	carcmoB1138
Carg02039	Cp4.1LG01g10080	Cucurbita pepo (Zucchini)	carcpeB1177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02039	Silver-seed gourd	carcarB591
Carg02039	Silver-seed gourd	carcarB592
Carg02039	Cucumber (Gy14) v2	carcgybB0834
Carg02039	Cucumber (Gy14) v1	carcgyB0964
Carg02039	Cucurbita maxima (Rimu)	carcmaB1166
Carg02039	Cucurbita maxima (Rimu)	carcmaB1167
Carg02039	Cucurbita moschata (Rifu)	carcmoB1134
Carg02039	Cucurbita moschata (Rifu)	carcmoB1135
Carg02039	Cucurbita pepo (Zucchini)	carcpeB1169
Carg02039	Cucurbita pepo (Zucchini)	carcpeB1172
Carg02039	Wild cucumber (PI 183967)	carcpiB0881
Carg02039	Cucumber (Chinese Long) v2	carcuB0861
Carg02039	Cucumber (Chinese Long) v3	carcucB0885
Carg02039	Bottle gourd (USVL1VR-Ls)	carlsiB765
Carg02039	Melon (DHL92) v3.5.1	carmeB0832
Carg02039	Melon (DHL92) v3.6.1	carmedB0844
Carg02039	Watermelon (Charleston Gray)	carwcgB0810
Carg02039	Watermelon (97103) v1	carwmB0845
Carg02039	Watermelon (97103) v2	carwmbB0873
Carg02039	Wax gourd	carwgoB0984