CmaCh04G009680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G009680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransmembrane protein, putative
LocationCma_Chr04 : 4959554 .. 4959994 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCCAAACATGCTAGCAGCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACAAGAGAGTTCGCCAAAAGAAGGCCAAGACAAAGACAAAAGGAGGTAAAGATGGTAGAGAGAGTAATGAGTGGTTATAAAGATGAGCTTAGAGGAATTAGTAATGAAAGATGTATGAAGAATGAAAGAGATGGGTTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTATCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

mRNA sequence

ATGGAAGATCCAAACATGCTAGCAGCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACAAGAGAGTTCGCCAAAAGAAGGCCAAGACAAAGACAAAAGGAGGTAAAGATGGTAGAGAGAGTAATGAGTGGTTATAAAGATGAGCTTAGAGGAATTAGTAATGAAAGATGTATGAAGAATGAAAGAGATGGGTTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTATCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

Coding sequence (CDS)

ATGGAAGATCCAAACATGCTAGCAGCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACAAGAGAGTTCGCCAAAAGAAGGCCAAGACAAAGACAAAAGGAGGTAAAGATGGTAGAGAGAGTAATGAGTGGTTATAAAGATGAGCTTAGAGGAATTAGTAATGAAAGATGTATGAAGAATGAAAGAGATGGGTTGGGTTTGAGTTGTTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTATCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

Protein sequence

MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVERVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSISGSCRAEQQFYPTTVHYQSIQVIPCT
Homology
[Close]
BLAST of CmaCh04G009680 vs. TrEMBL
Match: A0A0A0LKX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G116260 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-50
Identity = 106/146 (72.60%), Postives = 117/146 (80.14%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           MED N LAADCI ICCCC+CLALQI LLL LKLPWKL+RKTREFAK+R R R+KE KMV 
Sbjct: 1   MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  RVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSI 120
           +   G  +E+RGISN  CM+NE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ 
Sbjct: 61  KE-KGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120

Query: 121 SGSCRAEQQFYPTTVHYQSIQVIPCT 147
           SGSCR +  F PT V YQ IQVIP T
Sbjct: 121 SGSCR-DDLFSPTNVQYQLIQVIPST 144

[Close]
BLAST of CmaCh04G009680 vs. TrEMBL
Match: V7CHJ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G281600g PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-26
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQ-KEVKMV 60
           ME+ NML ADC+ I CCC+CL LQI + LLLKLPWK+IRKTRE+AK++ RQR+  + +  
Sbjct: 1   MEEWNMLGADCVVISCCCQCLVLQILVFLLLKLPWKVIRKTREYAKKKLRQRKGNDERAK 60

Query: 61  ERVMSG-YKDELRGISNERCMKNERDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFWGK 117
            ++ SG Y+D L  I +E+     RDG G SC  CMEE+EK+ME+  EKGEFGFGSFWG+
Sbjct: 61  MKIESGCYEDVLVRIDHEQSF---RDGEGFSCGGCMEEVEKMMEEFYEKGEFGFGSFWGR 117

[Close]
BLAST of CmaCh04G009680 vs. TrEMBL
Match: A0A0L9TNH6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155300 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-26
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           ME+ NMLAADC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++ RQR+      +
Sbjct: 1   MEEWNMLAADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKKK 60

Query: 61  RVMSGYKDELRGISNE----RCMKNERDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFW 120
              + Y+D L  I  +    +     RDG G  C  CM+E+EK+ME+L +KGEFGFGSFW
Sbjct: 61  IESACYEDVLVRIHEQSFRIQGEMTVRDGEGFGCGGCMDEVEKIMEELYQKGEFGFGSFW 120

Query: 121 GKGNSISGSCRAEQQFYPTTVHYQSIQVI 144
           G+      +   +    P  V YQ I ++
Sbjct: 121 GREEPCGFAVPTKIHNDPNLVRYQVIDLL 149

[Close]
BLAST of CmaCh04G009680 vs. TrEMBL
Match: W9QNZ2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026566 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 70/155 (45.16%), Postives = 94/155 (60.65%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           MED N LAADCI I  CC+CL LQI + +LLK+P+KLIRKTR+FAK++ ++R++  KMV 
Sbjct: 1   MEDGNALAADCIVISSCCQCLILQIIVFVLLKIPYKLIRKTRDFAKKKLQRRKRRGKMVI 60

Query: 61  RVMSGYKDELRGISNERCMKNERDG--------LGLSCCMEEIEKVMEDLQEKGEFGFGS 120
            ++  YK+EL GI  E        G            CCM+E+EKVME+L +KGEF FGS
Sbjct: 61  NMVGKYKNELVGIVGESLKIQATSGRVSADEKKSDCGCCMKEVEKVMEELSQKGEFSFGS 120

Query: 121 FWGK----GNSISGSCRAEQQFYPTTVHYQSIQVI 144
           FW K          SC  + +     V YQ I+++
Sbjct: 121 FWCKEEESAEIFPASCVQKHESDDGFVRYQLIKMV 155

[Close]
BLAST of CmaCh04G009680 vs. TrEMBL
Match: A0A151SDC0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025308 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-23
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQ----KEV 60
           MED NML ADC+ I CCC+CL LQI + +LLKLP KL++KTR++AK++ RQR+    +E+
Sbjct: 1   MEDWNMLGADCVVISCCCQCLMLQILVFVLLKLPCKLVKKTRDYAKKKLRQRKGNTHREM 60

Query: 61  KMVERVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGK 120
              E V+   +++  GI  E  +    DG G S CM+E+EKVME+  EKGEF FGSFWG+
Sbjct: 61  GSCEDVLVRIREQSLGIQAEVAL---TDGAGHS-CMDEVEKVMEEFYEKGEFAFGSFWGR 120

Query: 121 GNSISGSCRAEQQFYPTTVHYQSIQVI 144
                     +   +   V YQ I ++
Sbjct: 121 KGPWGVPTNVDHYDHVNFVQYQIIDLV 143

[Close]
BLAST of CmaCh04G009680 vs. TAIR10
Match: AT3G25597.1 (AT3G25597.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTRE-FAKRRPRQRQKEVKMV 60
           MED N  AADC+ + CCC CL LQI + + L LP KL++ TR+ + K    +R K + + 
Sbjct: 1   MEDLNAFAADCVVVSCCCNCLVLQIAIFIFLGLPQKLVKNTRKCYTKWGINRRIKRMGLC 60

Query: 61  ERVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGK 117
                  + +         M  E +G G   C+EE+E+V+E+  + GEF FGSFWG+
Sbjct: 61  FECRENTEVDSEWRKESMMMSMEMEGFG---CIEEVEQVLEEFSKNGEFLFGSFWGQ 114

[Close]
BLAST of CmaCh04G009680 vs. TAIR10
Match: AT1G26140.1 (AT1G26140.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 1 

Query: 2   EDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVER 61
           ED    AADC+ + CCC+CL LQ+++ +  K+P KL +K ++F KR         K ++ 
Sbjct: 47  EDCGAFAADCVVLSCCCQCLVLQVSVFIFFKIPRKLAKKMKKFVKRICG------KTLQP 106

Query: 62  VMSGYKDEL---RGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFW 115
            M   K+E     G   E       +G   S C E+I++++++L     F FGSFW
Sbjct: 107 TMEDVKEEHWSGNGFPFE-------EGSSRSICFEDIDRMLQELSMNKGFLFGSFW 149

[Close]
BLAST of CmaCh04G009680 vs. NCBI nr
Match: gi|778668222|ref|XP_011649060.1| (PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 7.3e-50
Identity = 106/146 (72.60%), Postives = 117/146 (80.14%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           MED N LAADCI ICCCC+CLALQI LLL LKLPWKL+RKTREFAK+R R R+KE KMV 
Sbjct: 1   MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  RVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSI 120
           +   G  +E+RGISN  CM+NE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ 
Sbjct: 61  KE-KGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120

Query: 121 SGSCRAEQQFYPTTVHYQSIQVIPCT 147
           SGSCR +  F PT V YQ IQVIP T
Sbjct: 121 SGSCR-DDLFSPTNVQYQLIQVIPST 144

[Close]
BLAST of CmaCh04G009680 vs. NCBI nr
Match: gi|659114694|ref|XP_008457185.1| (PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 6.2e-49
Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           MED N LAADCI ICCCC+CLALQI LLLLLKLP KL+RKTREFAK+R   R+KE KMV 
Sbjct: 1   MEDTNTLAADCIVICCCCQCLALQIILLLLLKLPCKLVRKTREFAKKRLGMREKEEKMVG 60

Query: 61  RVMSGYKDELRGISNERCMKNERDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSI 120
           +      +ELRGISN  CM+NE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ 
Sbjct: 61  KEKGCCGNELRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTR 120

Query: 121 SGSCRAEQQFYPTTVHYQSIQVIPCT 147
           SGSCR ++ F PT V YQ IQVIP T
Sbjct: 121 SGSCR-DELFSPTNVQYQLIQVIPST 145

[Close]
BLAST of CmaCh04G009680 vs. NCBI nr
Match: gi|593786683|ref|XP_007156382.1| (hypothetical protein PHAVU_003G281600g [Phaseolus vulgaris])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQ-KEVKMV 60
           ME+ NML ADC+ I CCC+CL LQI + LLLKLPWK+IRKTRE+AK++ RQR+  + +  
Sbjct: 1   MEEWNMLGADCVVISCCCQCLVLQILVFLLLKLPWKVIRKTREYAKKKLRQRKGNDERAK 60

Query: 61  ERVMSG-YKDELRGISNERCMKNERDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFWGK 117
            ++ SG Y+D L  I +E+     RDG G SC  CMEE+EK+ME+  EKGEFGFGSFWG+
Sbjct: 61  MKIESGCYEDVLVRIDHEQSF---RDGEGFSCGGCMEEVEKMMEEFYEKGEFGFGSFWGR 117

[Close]
BLAST of CmaCh04G009680 vs. NCBI nr
Match: gi|951003784|ref|XP_014507697.1| (PREDICTED: uncharacterized protein LOC106767343 [Vigna radiata var. radiata])

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-26
Identity = 71/145 (48.97%), Postives = 93/145 (64.14%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           ME+ NML ADC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++ RQR+     ++
Sbjct: 1   MEEWNMLGADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKMK 60

Query: 61  RVMSGYKDELRGISNERCMKNERDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFWGKGN 120
                Y+D L  I +E  M   RDG G  C  CM+E+EK+ME+L +KGEFGFGSFWG+  
Sbjct: 61  IESGCYEDVLVRIDHEGEMA-VRDGEGFDCGGCMDEVEKMMEELYQKGEFGFGSFWGREE 120

Query: 121 SISGSCRAEQQFYPTTVHYQSIQVI 144
                   +   +P  V YQ I  +
Sbjct: 121 PC-----GKHYNHPNLVRYQVIDFV 139

[Close]
BLAST of CmaCh04G009680 vs. NCBI nr
Match: gi|920688014|gb|KOM31997.1| (hypothetical protein LR48_Vigan01g155300 [Vigna angularis])

HSP 1 Score: 125.2 bits (313), Expect = 9.6e-26
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 1 

Query: 1   MEDPNMLAADCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRPRQRQKEVKMVE 60
           ME+ NMLAADC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++ RQR+      +
Sbjct: 1   MEEWNMLAADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKKK 60

Query: 61  RVMSGYKDELRGISNE----RCMKNERDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFW 120
              + Y+D L  I  +    +     RDG G  C  CM+E+EK+ME+L +KGEFGFGSFW
Sbjct: 61  IESACYEDVLVRIHEQSFRIQGEMTVRDGEGFGCGGCMDEVEKIMEELYQKGEFGFGSFW 120

Query: 121 GKGNSISGSCRAEQQFYPTTVHYQSIQVI 144
           G+      +   +    P  V YQ I ++
Sbjct: 121 GREEPCGFAVPTKIHNDPNLVRYQVIDLL 149

The following BLAST results are available for this feature:
BLAST of CmaCh04G009680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKX5_CUCSA5.1e-5072.60Uncharacterized protein OS=Cucumis sativus GN=Csa_2G116260 PE=4 SV=1[more]
V7CHJ1_PHAVU2.3e-2657.50Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G281600g PE=4 SV=1[more]
A0A0L9TNH6_PHAAN6.7e-2646.98Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155300 PE=4 SV=1[more]
W9QNZ2_9ROSA1.3e-2445.16Uncharacterized protein OS=Morus notabilis GN=L484_026566 PE=4 SV=1[more]
A0A151SDC0_CAJCA5.3e-2344.90Uncharacterized protein OS=Cajanus cajan GN=KK1_025308 PE=4 SV=1[more]
BLAST of CmaCh04G009680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25597.11.6e-1538.46 unknown protein[more]
AT1G26140.11.2e-1033.62 unknown protein[more]
BLAST of CmaCh04G009680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668222|ref|XP_011649060.1|7.3e-5072.60PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus][more]
gi|659114694|ref|XP_008457185.1|6.2e-4971.92PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo][more]
gi|593786683|ref|XP_007156382.1|3.3e-2657.50hypothetical protein PHAVU_003G281600g [Phaseolus vulgaris][more]
gi|951003784|ref|XP_014507697.1|5.6e-2648.97PREDICTED: uncharacterized protein LOC106767343 [Vigna radiata var. radiata][more]
gi|920688014|gb|KOM31997.1|9.6e-2646.98hypothetical protein LR48_Vigan01g155300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009680.1CmaCh04G009680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264FAMILY NOT NAMEDcoord: 1..121
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G009680CmoCh15G015010Cucurbita moschata (Rifu)cmacmoB699
CmaCh04G009680Cp4.1LG01g07970Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G009680Carg00084Silver-seed gourdcarcmaB0948
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G009680CmaCh15G014230Cucurbita maxima (Rimu)cmacmaB331
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G009680Watermelon (97103) v2cmawmbB780
CmaCh04G009680Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G009680Cucurbita moschata (Rifu)cmacmoB728