Cp4.1LG01g07970 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07970
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane protein, putative
LocationCp4.1LG01 : 5169648 .. 5170079 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCCAAACATGCTAGCACCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACGAGAGAGTTCGCCAAAAGAAGGCTAAGACAAAGACAAAAGGAGGAAAAGATGGTAATGAGTGGTTATAAAGATGAGCTTAGAGGGCTTAGTGATGAAAGATGTATGAGGAATGAAGGAGATGGGTTGGGTTTGAGCTGCTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTACCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

mRNA sequence

ATGGAAGATCCAAACATGCTAGCACCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACGAGAGAGTTCGCCAAAAGAAGGCTAAGACAAAGACAAAAGGAGGAAAAGATGGTAATGAGTGGTTATAAAGATGAGCTTAGAGGGCTTAGTGATGAAAGATGTATGAGGAATGAAGGAGATGGGTTGGGTTTGAGCTGCTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTACCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

Coding sequence (CDS)

ATGGAAGATCCAAACATGCTAGCACCCGACTGCATTGCCATATGTTGTTGCTGTGAGTGCCTGGCGTTGCAGATCACTCTCCTTTTGTTACTCAAGCTTCCATGGAAGCTCATTCGAAAGACGAGAGAGTTCGCCAAAAGAAGGCTAAGACAAAGACAAAAGGAGGAAAAGATGGTAATGAGTGGTTATAAAGATGAGCTTAGAGGGCTTAGTGATGAAAGATGTATGAGGAATGAAGGAGATGGGTTGGGTTTGAGCTGCTGTATGGAAGAGATTGAGAAGGTTATGGAGGATTTGCAGGAGAAGGGAGAGTTTGGTTTTGGAAGCTTTTGGGGAAAGGGGAATTCAATTTCAGGTTCCTGCAGAGCTGAACAACAATTTTACCCTACAACTGTACACTATCAATCAATTCAAGTAATTCCTTGTACATGA

Protein sequence

MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEEKMVMSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSISGSCRAEQQFYPTTVHYQSIQVIPCT
Homology
[Close]
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match: A0A0A0LKX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G116260 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-50
Identity = 106/145 (73.10%), Postives = 117/145 (80.69%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEEKMV- 60
           MED N LA DCI ICCCC+CLALQI LLL LKLPWKL+RKTREFAK+RLR R+KEEKMV 
Sbjct: 1   MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  -MSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSIS 120
              G  +E+RG+S+  CMRNE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ S
Sbjct: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120

Query: 121 GSCRAEQQFYPTTVHYQSIQVIPCT 144
           GSCR +  F PT V YQ IQVIP T
Sbjct: 121 GSCR-DDLFSPTNVQYQLIQVIPST 144

[Close]
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match: A0A0L9TNH6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155300 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-27
Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQ---KEEK 60
           ME+ NMLA DC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++LRQR+    ++K
Sbjct: 1   MEEWNMLAADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKKK 60

Query: 61  MVMSGYKDELRGLSDE------RCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFW 120
           +  + Y+D L  + ++           +G+G G   CM+E+EK+ME+L +KGEFGFGSFW
Sbjct: 61  IESACYEDVLVRIHEQSFRIQGEMTVRDGEGFGCGGCMDEVEKIMEELYQKGEFGFGSFW 120

Query: 121 GKGNSISGSCRAEQQFYPTTVHYQSIQVI 141
           G+      +   +    P  V YQ I ++
Sbjct: 121 GREEPCGFAVPTKIHNDPNLVRYQVIDLL 149

[Close]
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match: V7CHJ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G281600g PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQR----QKEE 60
           ME+ NML  DC+ I CCC+CL LQI + LLLKLPWK+IRKTRE+AK++LRQR    ++ +
Sbjct: 1   MEEWNMLGADCVVISCCCQCLVLQILVFLLLKLPWKVIRKTREYAKKKLRQRKGNDERAK 60

Query: 61  KMVMSG-YKDELRGLSDERCMRNEGDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFWGK 114
             + SG Y+D L  +  E+  R   DG G SC  CMEE+EK+ME+  EKGEFGFGSFWG+
Sbjct: 61  MKIESGCYEDVLVRIDHEQSFR---DGEGFSCGGCMEEVEKMMEEFYEKGEFGFGSFWGR 117

[Close]
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match: W9QNZ2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026566 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-23
Identity = 69/155 (44.52%), Postives = 94/155 (60.65%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEEKMVM 60
           MED N LA DCI I  CC+CL LQI + +LLK+P+KLIRKTR+FAK++L++R++  KMV+
Sbjct: 1   MEDGNALAADCIVISSCCQCLILQIIVFVLLKIPYKLIRKTRDFAKKKLQRRKRRGKMVI 60

Query: 61  S---GYKDELRGLSDERCMRNEGDG--------LGLSCCMEEIEKVMEDLQEKGEFGFGS 120
           +    YK+EL G+  E        G            CCM+E+EKVME+L +KGEF FGS
Sbjct: 61  NMVGKYKNELVGIVGESLKIQATSGRVSADEKKSDCGCCMKEVEKVMEELSQKGEFSFGS 120

Query: 121 FWGK----GNSISGSCRAEQQFYPTTVHYQSIQVI 141
           FW K          SC  + +     V YQ I+++
Sbjct: 121 FWCKEEESAEIFPASCVQKHESDDGFVRYQLIKMV 155

[Close]
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match: M5XZU9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012803mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23
Identity = 62/150 (41.33%), Postives = 97/150 (64.67%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEE---- 60
           MED  M+A DC+ I CCC+CL LQIT+ +L KLP KLI+KTR++  ++L+QR+++E    
Sbjct: 1   MEDCGMVAADCVVISCCCQCLILQITIFILFKLPCKLIKKTRDYTMKKLQQRKRKEIVVE 60

Query: 61  ---KMVMSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGK 120
              ++V+  +KD+   +  E  +R+   G    CCMEE++KV+++L ++GEFGFGSFWG+
Sbjct: 61  SQGEIVLDPFKDDFVSILGE-SIRSIEAGHSCRCCMEEVDKVLQELSQRGEFGFGSFWGR 120

Query: 121 ---GNSISGSCRAEQQFYPTTVHYQSIQVI 141
              G S       + QF    V +Q I+++
Sbjct: 121 REMGCSPIHHSAEDDQFDSRFVQFQLIEMV 149

[Close]
BLAST of Cp4.1LG01g07970 vs. TAIR10
Match: AT3G25597.1 (AT3G25597.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTRE-FAKRRLRQRQKEEKMV 60
           MED N  A DC+ + CCC CL LQI + + L LP KL++ TR+ + K  + +R K   + 
Sbjct: 1   MEDLNAFAADCVVVSCCCNCLVLQIAIFIFLGLPQKLVKNTRKCYTKWGINRRIKRMGLC 60

Query: 61  MSGYKD---ELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGK 114
               ++   +     +   M  E +G G   C+EE+E+V+E+  + GEF FGSFWG+
Sbjct: 61  FECRENTEVDSEWRKESMMMSMEMEGFG---CIEEVEQVLEEFSKNGEFLFGSFWGQ 114

[Close]
BLAST of Cp4.1LG01g07970 vs. TAIR10
Match: AT1G26140.1 (AT1G26140.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = 1 

Query: 2   EDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKR-------RLRQRQK 61
           ED    A DC+ + CCC+CL LQ+++ +  K+P KL +K ++F KR          +  K
Sbjct: 47  EDCGAFAADCVVLSCCCQCLVLQVSVFIFFKIPRKLAKKMKKFVKRICGKTLQPTMEDVK 106

Query: 62  EEKMVMSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFW 112
           EE    +G+  E              +G   S C E+I++++++L     F FGSFW
Sbjct: 107 EEHWSGNGFPFE--------------EGSSRSICFEDIDRMLQELSMNKGFLFGSFW 149

[Close]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match: gi|778668222|ref|XP_011649060.1| (PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 4.2e-50
Identity = 106/145 (73.10%), Postives = 117/145 (80.69%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEEKMV- 60
           MED N LA DCI ICCCC+CLALQI LLL LKLPWKL+RKTREFAK+RLR R+KEEKMV 
Sbjct: 1   MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60

Query: 61  -MSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSIS 120
              G  +E+RG+S+  CMRNE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ S
Sbjct: 61  KEKGCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTSS 120

Query: 121 GSCRAEQQFYPTTVHYQSIQVIPCT 144
           GSCR +  F PT V YQ IQVIP T
Sbjct: 121 GSCR-DDLFSPTNVQYQLIQVIPST 144

[Close]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match: gi|659114694|ref|XP_008457185.1| (PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 6.7e-48
Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQKEEKMV- 60
           MED N LA DCI ICCCC+CLALQI LLLLLKLP KL+RKTREFAK+RL  R+KEEKMV 
Sbjct: 1   MEDTNTLAADCIVICCCCQCLALQIILLLLLKLPCKLVRKTREFAKKRLGMREKEEKMVG 60

Query: 61  --MSGYKDELRGLSDERCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNSI 120
                  +ELRG+S+  CMRNE  GLGLSCCMEEIEKVM+DL EKGEFGFGSFWG GN+ 
Sbjct: 61  KEKGCCGNELRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTR 120

Query: 121 SGSCRAEQQFYPTTVHYQSIQVIPCT 144
           SGSCR ++ F PT V YQ IQVIP T
Sbjct: 121 SGSCR-DELFSPTNVQYQLIQVIPST 145

[Close]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match: gi|920688014|gb|KOM31997.1| (hypothetical protein LR48_Vigan01g155300 [Vigna angularis])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQ---KEEK 60
           ME+ NMLA DC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++LRQR+    ++K
Sbjct: 1   MEEWNMLAADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKKK 60

Query: 61  MVMSGYKDELRGLSDE------RCMRNEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFW 120
           +  + Y+D L  + ++           +G+G G   CM+E+EK+ME+L +KGEFGFGSFW
Sbjct: 61  IESACYEDVLVRIHEQSFRIQGEMTVRDGEGFGCGGCMDEVEKIMEELYQKGEFGFGSFW 120

Query: 121 GKGNSISGSCRAEQQFYPTTVHYQSIQVI 141
           G+      +   +    P  V YQ I ++
Sbjct: 121 GREEPCGFAVPTKIHNDPNLVRYQVIDLL 149

[Close]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match: gi|593786683|ref|XP_007156382.1| (hypothetical protein PHAVU_003G281600g [Phaseolus vulgaris])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQR----QKEE 60
           ME+ NML  DC+ I CCC+CL LQI + LLLKLPWK+IRKTRE+AK++LRQR    ++ +
Sbjct: 1   MEEWNMLGADCVVISCCCQCLVLQILVFLLLKLPWKVIRKTREYAKKKLRQRKGNDERAK 60

Query: 61  KMVMSG-YKDELRGLSDERCMRNEGDGLGLSC--CMEEIEKVMEDLQEKGEFGFGSFWGK 114
             + SG Y+D L  +  E+  R   DG G SC  CMEE+EK+ME+  EKGEFGFGSFWG+
Sbjct: 61  MKIESGCYEDVLVRIDHEQSFR---DGEGFSCGGCMEEVEKMMEEFYEKGEFGFGSFWGR 117

[Close]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match: gi|951003784|ref|XP_014507697.1| (PREDICTED: uncharacterized protein LOC106767343 [Vigna radiata var. radiata])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 1 

Query: 1   MEDPNMLAPDCIAICCCCECLALQITLLLLLKLPWKLIRKTREFAKRRLRQRQ-KEEKM- 60
           ME+ NML  DC+ I CCC+CL LQI + L+LKLPWKLIRKTRE+AK++LRQR+  ++KM 
Sbjct: 1   MEEWNMLGADCVVISCCCQCLLLQILVFLMLKLPWKLIRKTREYAKKKLRQRKGNDDKMK 60

Query: 61  VMSG-YKDELRGLSDERCMR-NEGDGLGLSCCMEEIEKVMEDLQEKGEFGFGSFWGKGNS 120
           + SG Y+D L  +  E  M   +G+G     CM+E+EK+ME+L +KGEFGFGSFWG+   
Sbjct: 61  IESGCYEDVLVRIDHEGEMAVRDGEGFDCGGCMDEVEKMMEELYQKGEFGFGSFWGREEP 120

Query: 121 ISGSCRAEQQFYPTTVHYQSIQVI 141
                  +   +P  V YQ I  +
Sbjct: 121 C-----GKHYNHPNLVRYQVIDFV 139

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKX5_CUCSA2.9e-5073.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G116260 PE=4 SV=1[more]
A0A0L9TNH6_PHAAN7.7e-2745.64Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g155300 PE=4 SV=1[more]
V7CHJ1_PHAVU5.0e-2656.67Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G281600g PE=4 SV=1[more]
W9QNZ2_9ROSA3.0e-2344.52Uncharacterized protein OS=Morus notabilis GN=L484_026566 PE=4 SV=1[more]
M5XZU9_PRUPE4.0e-2341.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012803mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g07970 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25597.12.3e-1437.61 unknown protein[more]
AT1G26140.13.4e-1031.62 unknown protein[more]
BLAST of Cp4.1LG01g07970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668222|ref|XP_011649060.1|4.2e-5073.10PREDICTED: uncharacterized protein LOC105434576 [Cucumis sativus][more]
gi|659114694|ref|XP_008457185.1|6.7e-4871.92PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo][more]
gi|920688014|gb|KOM31997.1|1.1e-2645.64hypothetical protein LR48_Vigan01g155300 [Vigna angularis][more]
gi|593786683|ref|XP_007156382.1|7.2e-2656.67hypothetical protein PHAVU_003G281600g [Phaseolus vulgaris][more]
gi|951003784|ref|XP_014507697.1|9.4e-2649.31PREDICTED: uncharacterized protein LOC106767343 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07970.1Cp4.1LG01g07970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264FAMILY NOT NAMEDcoord: 1..118
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g07970CmaCh04G009680Cucurbita maxima (Rimu)cmacpeB720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07970Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07970Silver-seed gourdcarcpeB0938