CmaCh04G009210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G009210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCma_Chr04 : 4756072 .. 4756344 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCGCAAAACCAAAAAGTACCAGCAGAGGCCCAAGATATCAAGGGAGCAATTGAGGCTAATCTTCAGAAACCACGATGACAACGGCGACGGCCGCCTCAGCTCCACCGAGCTCACCCAAGCCTTCCACTACATCGGCGCCCTTTTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTTCACCGATTCTGACAGAGACGGGTTCATCGATGAGAAGGATTTCGAACAGCTCATCGATTATGCAGAGAAACGCCAATACACCGTGATTTAA

mRNA sequence

ATGTCTCGCAAAACCAAAAAGTACCAGCAGAGGCCCAAGATATCAAGGGAGCAATTGAGGCTAATCTTCAGAAACCACGATGACAACGGCGACGGCCGCCTCAGCTCCACCGAGCTCACCCAAGCCTTCCACTACATCGGCGCCCTTTTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTTCACCGATTCTGACAGAGACGGGTTCATCGATGAGAAGGATTTCGAACAGCTCATCGATTATGCAGAGAAACGCCAATACACCGTGATTTAA

Coding sequence (CDS)

ATGTCTCGCAAAACCAAAAAGTACCAGCAGAGGCCCAAGATATCAAGGGAGCAATTGAGGCTAATCTTCAGAAACCACGATGACAACGGCGACGGCCGCCTCAGCTCCACCGAGCTCACCCAAGCCTTCCACTACATCGGCGCCCTTTTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTTCACCGATTCTGACAGAGACGGGTTCATCGATGAGAAGGATTTCGAACAGCTCATCGATTATGCAGAGAAACGCCAATACACCGTGATTTAA

Protein sequence

MSRKTKKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFIDEKDFEQLIDYAEKRQYTVI
Homology
[Close]
BLAST of CmaCh04G009210 vs. TrEMBL
Match: A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 1  MSRKTKKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALL 60
          MSRK+K Y  R K+SREQL LIFRNHD + DGRLS+TELT+AF YIGA LP++RA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 FTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
            DSDRDGFI EKDFE L++YAE+RQYT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of CmaCh04G009210 vs. TrEMBL
Match: A5AWP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023174 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.9e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1 

Query: 6  KKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSD 65
          K    +  +  +QL+ IF+ HD NGDG+L+  EL QAF ++GAL+P +RA  AL   D+D
Sbjct: 7  KTIPSKSPLPEQQLKKIFKQHDTNGDGQLNKAELKQAFQHLGALIPGWRAHRALHHADTD 66

Query: 66 RDGFIDEKDFEQLIDYAEKRQYTV 90
           DG I EK+ + L++YA K  YT+
Sbjct: 67 GDGCISEKEMKDLVEYAAKFGYTI 90

[Close]
BLAST of CmaCh04G009210 vs. TrEMBL
Match: A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 13 KISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFIDE 72
          K+ +E+++ +FR HD NGDGRLS  EL++AF   GA  P +RA   L   D D DGFI E
Sbjct: 14 KLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISE 73

Query: 73 KDFEQLIDYAEKRQYTVI 91
          ++ ++++DYA K +Y ++
Sbjct: 74 QELDKVVDYAIKCKYNLL 91

[Close]
BLAST of CmaCh04G009210 vs. TrEMBL
Match: A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.8e-12
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 11 RPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFI 70
          R ++SRE ++ IFR HD +GDGRLS  E+ +AF   G++LP ++A + +   D + DGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 DEKDFEQLIDYAEKRQY 88
          +E++ ++L+DYA+K Q+
Sbjct: 67 EEEELDKLVDYAQKFQH 83

[Close]
BLAST of CmaCh04G009210 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-11
Identity = 32/84 (38.10%), Postives = 58/84 (69.05%), Query Frame = 1 

Query: 1   MSRKTKKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALL 60
           ++R   +      +SRE+++ IF+ HD+N DG L+  ELT+AF ++G++ P ++AC+ ++
Sbjct: 83  ITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMV 142

Query: 61  FTDSDRDGFIDEKDFEQLIDYAEK 85
           + D++ DG I E + ++LIDYA K
Sbjct: 143 YADANEDGLISEAELDKLIDYASK 166

[Close]
BLAST of CmaCh04G009210 vs. TAIR10
Match: AT1G76650.1 (AT1G76650.1 calmodulin-like 38)

HSP 1 Score: 47.4 bits (111), Expect = 5.5e-06
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1 

Query: 18  QLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFIDEKDFEQ 77
           +L  +F   D N DGR+S  EL ++F  +G  L    A  A+  +D+D DG +D ++F Q
Sbjct: 43  ELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQ 102

Query: 78  LIDYAEKRQ 87
           LI   ++ +
Sbjct: 103 LIKVDDEEE 111

[Close]
BLAST of CmaCh04G009210 vs. NCBI nr
Match: gi|700200027|gb|KGN55185.1| (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-28
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 1  MSRKTKKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALL 60
          MSRK+K Y  R K+SREQL LIFRNHD + DGRLS+TELT+AF YIGA LP++RA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 FTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
            DSDRDGFI EKDFE L++YAE+RQYT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]
BLAST of CmaCh04G009210 vs. NCBI nr
Match: gi|147866710|emb|CAN78405.1| (hypothetical protein VITISV_023174 [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1 

Query: 6  KKYQQRPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSD 65
          K    +  +  +QL+ IF+ HD NGDG+L+  EL QAF ++GAL+P +RA  AL   D+D
Sbjct: 7  KTIPSKSPLPEQQLKKIFKQHDTNGDGQLNKAELKQAFQHLGALIPGWRAHRALHHADTD 66

Query: 66 RDGFIDEKDFEQLIDYAEKRQYTV 90
           DG I EK+ + L++YA K  YT+
Sbjct: 67 GDGCISEKEMKDLVEYAAKFGYTI 90

[Close]
BLAST of CmaCh04G009210 vs. NCBI nr
Match: gi|700207396|gb|KGN62515.1| (hypothetical protein Csa_2G358860 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1 

Query: 13 KISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFIDE 72
          K+ +E+++ +FR HD NGDGRLS  EL++AF   GA  P +RA   L   D D DGFI E
Sbjct: 14 KLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGFISE 73

Query: 73 KDFEQLIDYAEKRQYTVI 91
          ++ ++++DYA K +Y ++
Sbjct: 74 QELDKVVDYAIKCKYNLL 91

[Close]
BLAST of CmaCh04G009210 vs. NCBI nr
Match: gi|449470198|ref|XP_004152805.1| (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 11  RPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFI 70
           R ++SRE ++ IFR HD +GDGRLS  E+ +AF   G++LP ++A + +   D + DGFI
Sbjct: 88  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 147

Query: 71  DEKDFEQLIDYAEKRQY 88
           +E++ ++L+DYA+K Q+
Sbjct: 148 EEEELDKLVDYAQKFQH 164

[Close]
BLAST of CmaCh04G009210 vs. NCBI nr
Match: gi|700207397|gb|KGN62516.1| (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 34/77 (44.16%), Postives = 56/77 (72.73%), Query Frame = 1 

Query: 11 RPKISREQLRLIFRNHDDNGDGRLSSTELTQAFHYIGALLPSFRACHALLFTDSDRDGFI 70
          R ++SRE ++ IFR HD +GDGRLS  E+ +AF   G++LP ++A + +   D + DGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 DEKDFEQLIDYAEKRQY 88
          +E++ ++L+DYA+K Q+
Sbjct: 67 EEEELDKLVDYAQKFQH 83

The following BLAST results are available for this feature:
BLAST of CmaCh04G009210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR6_CUCSA1.2e-2872.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639730 PE=4 SV=1[more]
A5AWP8_VITVI8.9e-1345.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023174 PE=4 SV=1[more]
A0A0A0LKW4_CUCSA1.5e-1244.87Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358860 PE=4 SV=1[more]
A0A0A0LRC1_CUCSA5.8e-1244.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA2.2e-1138.10Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
BLAST of CmaCh04G009210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76650.15.5e-0634.78 calmodulin-like 38[more]
BLAST of CmaCh04G009210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200027|gb|KGN55185.1|1.7e-2872.22hypothetical protein Csa_4G639730 [Cucumis sativus][more]
gi|147866710|emb|CAN78405.1|1.3e-1245.24hypothetical protein VITISV_023174 [Vitis vinifera][more]
gi|700207396|gb|KGN62515.1|2.2e-1244.87hypothetical protein Csa_2G358860 [Cucumis sativus][more]
gi|449470198|ref|XP_004152805.1|8.3e-1244.16PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
gi|700207397|gb|KGN62516.1|8.3e-1244.16hypothetical protein Csa_2G358870 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009210.1CmaCh04G009210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 63..78
score:
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 19..44
score: 2.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 14..49
score: 12.589coord: 63..85
score: 7
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 6..82
score: 1.3
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 7..80
score: 1.91
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 27..39
score: -coord: 63..75
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 15..82
score: 4.6
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 15..82
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G009210CmoCh04G009900Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G009210Carg00038Silver-seed gourdcarcmaB0948
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G009210Cucurbita maxima (Rimu)cmacmaB064
CmaCh04G009210Cucurbita maxima (Rimu)cmacmaB350
CmaCh04G009210Cucumber (Gy14) v1cgycmaB0122
CmaCh04G009210Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G009210Wild cucumber (PI 183967)cmacpiB710
CmaCh04G009210Cucumber (Chinese Long) v2cmacuB702
CmaCh04G009210Melon (DHL92) v3.5.1cmameB689
CmaCh04G009210Watermelon (Charleston Gray)cmawcgB614
CmaCh04G009210Watermelon (97103) v1cmawmB659
CmaCh04G009210Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G009210Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G009210Bottle gourd (USVL1VR-Ls)cmalsiB685
CmaCh04G009210Bottle gourd (USVL1VR-Ls)cmalsiB691
CmaCh04G009210Cucumber (Gy14) v2cgybcmaB416
CmaCh04G009210Melon (DHL92) v3.6.1cmamedB778
CmaCh04G009210Silver-seed gourdcarcmaB0301
CmaCh04G009210Cucumber (Chinese Long) v3cmacucB0837
CmaCh04G009210Watermelon (97103) v2cmawmbB718
CmaCh04G009210Wax gourdcmawgoB0826