Carg00038 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00038
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand family protein, putative
Location	Cucurbita_argyrosperma_scaffold_001 : 139288 .. 139560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGCAAAACCAAAATGTACCATCAGAGGCCCAAGATATCAAGACAGCAATTAAGGGTAATCTTCAGAAACCACGACCGAGATGGTGACGGCCGCCTGAGCTCCGCCGAGCTGACCAAAGCCTTCCACTACATCGGTGCCCTTCTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTACACCGATTCTGACAGAGACGGATTCATCGATGAGAAGGATTTCGAACAGCTCATTGATTATGCCGAGAAACGCCAATACACCGTCATTTAA

mRNA sequence

ATGCCTCGCAAAACCAAAATGTACCATCAGAGGCCCAAGATATCAAGACAGCAATTAAGGGTAATCTTCAGAAACCACGACCGAGATGGTGACGGCCGCCTGAGCTCCGCCGAGCTGACCAAAGCCTTCCACTACATCGGTGCCCTTCTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTACACCGATTCTGACAGAGACGGATTCATCGATGAGAAGGATTTCGAACAGCTCATTGATTATGCCGAGAAACGCCAATACACCGTCATTTAA

Coding sequence (CDS)

ATGCCTCGCAAAACCAAAATGTACCATCAGAGGCCCAAGATATCAAGACAGCAATTAAGGGTAATCTTCAGAAACCACGACCGAGATGGTGACGGCCGCCTGAGCTCCGCCGAGCTGACCAAAGCCTTCCACTACATCGGTGCCCTTCTGCCATCATTCAGAGCTTGCCACGCTCTTCTTTACACCGATTCTGACAGAGACGGATTCATCGATGAGAAGGATTTCGAACAGCTCATTGATTATGCCGAGAAACGCCAATACACCGTCATTTAA

Protein sequence

MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI

Homology

[Close]

BLAST of Carg00038 vs. NCBI nr
Match: KGN55185.1 (hypothetical protein Csa_4G639730 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALL 60
          M RK+K Y+ R K+SR+QL +IFRNHD D DGRLS+ ELT+AF YIGA LP++RA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 YTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
          + DSDRDGFI EKDFE L++YAE+RQYT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Carg00038 vs. NCBI nr
Match: POF10332.1 (calcium-binding allergen ole e 8 [Quercus suber])

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MPRKTKMYHQRPKI-SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHAL 60
          M RK  +Y     + ++ QL  +F++HD DGDG+LS  EL KAF Y+G+   S+R   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 LYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
            TD++ DG+IDEK+ E+L+DY  +RQYT++
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]

BLAST of Carg00038 vs. NCBI nr
Match: XP_022951880.1 (calmodulin-like [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 8.5e-13
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 13  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDE 72
           ++SR ++R IF  HD DGDG L+ +ELTKAF +IG++LP ++A + L Y D+D DG I E
Sbjct: 78  RLSRSEIRDIFLEHDIDGDGYLNVSELTKAFSFIGSMLPLYKAHYGLNYADADGDGRISE 137

Query: 73  KDFEQLIDYAEK 85
           ++ E+L+DYAE+
Sbjct: 138 EELEKLVDYAER 149

[Close]

BLAST of Carg00038 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 11  RPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFI 70
           R ++SR+ ++ IFR HD DGDGRLS  E+ KAF   G++LP ++A + + + D + DGFI
Sbjct: 88  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 147

Query: 71  DEKDFEQLIDYAEKRQY 88
           +E++ ++L+DYA+K Q+
Sbjct: 148 EEEELDKLVDYAQKFQH 164

[Close]

BLAST of Carg00038 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 11 RPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFI 70
          R ++SR+ ++ IFR HD DGDGRLS  E+ KAF   G++LP ++A + + + D + DGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 DEKDFEQLIDYAEKRQY 88
          +E++ ++L+DYA+K Q+
Sbjct: 67 EEEELDKLVDYAQKFQH 83

[Close]

BLAST of Carg00038 vs. TAIR10
Match: AT1G76650.1 (calmodulin-like 38)

HSP 1 Score: 47.8 bits (112), Expect = 4.2e-06
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 17  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFE 76
           ++L  +F   D + DGR+S  EL K+F  +G  L    A  A+  +D+D DG +D ++F 
Sbjct: 42  RELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFS 101

Query: 77  QLIDYAEKRQ 87
           QLI   ++ +
Sbjct: 102 QLIKVDDEEE 111

[Close]

BLAST of Carg00038 vs. TAIR10
Match: AT3G50770.1 (calmodulin-like 41)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 15  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKD 74
           S+++LR +F + D DGDG++S+ EL   F  +G  +    A  A+   D+D DG +  +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  FEQLI 80
           F  L+
Sbjct: 121 FVGLM 125

[Close]

BLAST of Carg00038 vs. TAIR10
Match: AT2G43290.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.8e-04
Identity = 19/66 (28.79%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 13  KISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDE 72
           +I   +L+ +F+  D++GDGR++  EL  +   +G  +P       +   D++ DG +D 
Sbjct: 60  RIDPSELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDI 119

Query: 73  KDFEQL 79
            +FE L
Sbjct: 120 DEFESL 125

[Close]

BLAST of Carg00038 vs. TAIR10
Match: AT3G51920.1 (calmodulin 9)

HSP 1 Score: 42.0 bits (97), Expect = 2.3e-04
Identity = 21/62 (33.87%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 18  QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQ 77
           +L  +FR  DRDGDG +S  EL +    +G  + +  A H +   D D DGF+   +F +
Sbjct: 85  ELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFSK 144

Query: 78  LI 80
           ++
Sbjct: 145 MM 146

[Close]

BLAST of Carg00038 vs. TAIR10
Match: AT1G76640.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 22/63 (34.92%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 17 QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFE 76
          + L  +F   D + DGR+S+ EL K+F  +G  +    A  A+  +D D DG +D  +F 
Sbjct: 21 RDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFA 80

Query: 77 QLI 80
           LI
Sbjct: 81 LLI 83

[Close]

BLAST of Carg00038 vs. Swiss-Prot
Match: sp|Q9SRE6|CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.6e-05
Identity = 24/70 (34.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 17  QQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFE 76
           ++L  +F   D + DGR+S  EL K+F  +G  L    A  A+  +D+D DG +D ++F 
Sbjct: 42  RELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFS 101

Query: 77  QLIDYAEKRQ 87
           QLI   ++ +
Sbjct: 102 QLIKVDDEEE 111

[Close]

BLAST of Carg00038 vs. Swiss-Prot
Match: sp|Q0DJV6|CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-05
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 18 QLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDF 76
          +L  +FR +D +GDG++S+ EL      +GA L        +   DSDRDGF+D  +F
Sbjct: 5  ELEQVFRRYDANGDGKISAEELASVLRALGAPLGPGEVRRMMDEMDSDRDGFVDLSEF 62

[Close]

BLAST of Carg00038 vs. Swiss-Prot
Match: sp|Q8L3R2|CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 15  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKD 74
           S+++LR +F + D DGDG++S+ EL   F  +G  +    A  A+   D+D DG +  +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  FEQLI 80
           F  L+
Sbjct: 121 FVGLM 125

[Close]

BLAST of Carg00038 vs. Swiss-Prot
Match: sp|Q39419|POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 9  HQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDG 68
          H + K  R++   IF+  D +GDG++S+AEL +A   +G++ P     H +   D+D DG
Sbjct: 5  HPQDKAERER---IFKRFDANGDGKISAAELGEALKTLGSITPD-EVKHMMAEIDTDGDG 64

Query: 69 FIDEKDF 76
          FI  ++F
Sbjct: 65 FISFQEF 67

[Close]

BLAST of Carg00038 vs. Swiss-Prot
Match: sp|Q8VWY6|POLC1_TOBAC (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-04
Identity = 22/56 (39.29%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 22 IFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKDFEQ 78
          IF+  D +GDG++SSAEL +    +G+ + S    H +   D+D DGFI  ++FE+
Sbjct: 14 IFKRFDLNGDGKISSAELGETLKMLGS-VTSEEVQHMMAELDTDGDGFISYEEFEE 68

[Close]

BLAST of Carg00038 vs. TrEMBL
Match: tr|A0A0A0KZR6|A0A0A0KZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MPRKTKMYHQRPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALL 60
          M RK+K Y+ R K+SR+QL +IFRNHD D DGRLS+ ELT+AF YIGA LP++RA HALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 YTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
          + DSDRDGFI EKDFE L++YAE+RQYT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Carg00038 vs. TrEMBL
Match: tr|A0A2P4LY04|A0A2P4LY04_QUESU (Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MPRKTKMYHQRPKI-SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHAL 60
          M RK  +Y     + ++ QL  +F++HD DGDG+LS  EL KAF Y+G+   S+R   AL
Sbjct: 1  MGRKGTVYKPTSVLYTKDQLMNVFKSHDADGDGKLSREELKKAFKYLGSRWCSYRTEQAL 60

Query: 61 LYTDSDRDGFIDEKDFEQLIDYAEKRQYTVI 91
            TD++ DG+IDEK+ E+L+DY  +RQYT++
Sbjct: 61 RCTDTNDDGYIDEKELEKLVDYTLERQYTIV 91

[Close]

BLAST of Carg00038 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 11 RPKISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFI 70
          R ++SR+ ++ IFR HD DGDGRLS  E+ KAF   G++LP ++A + + + D + DGFI
Sbjct: 7  RLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDGFI 66

Query: 71 DEKDFEQLIDYAEKRQY 88
          +E++ ++L+DYA+K Q+
Sbjct: 67 EEEELDKLVDYAQKFQH 83

[Close]

BLAST of Carg00038 vs. TrEMBL
Match: tr|A0A2P5F8Q2|A0A2P5F8Q2_9ROSA (Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_099130 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 15  SRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEKD 74
           S  QL+ +F++ D +GDGRLS  EL  AF  +G+  P +RAC AL   D +RDGF+DE +
Sbjct: 35  SEVQLKGVFKSSDANGDGRLSRQELRNAFASLGSFAPGWRACRALRRADKNRDGFVDEDE 94

Query: 75  FEQLIDYAEKRQYTV 90
            + L+ YA KR YT+
Sbjct: 95  LDYLVKYAAKRGYTI 109

[Close]

BLAST of Carg00038 vs. TrEMBL
Match: tr|A0A0A0KMQ1|A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 14  ISRQQLRVIFRNHDRDGDGRLSSAELTKAFHYIGALLPSFRACHALLYTDSDRDGFIDEK 73
           +SR++++ IF+ HD + DG L+  ELTKAF ++G++ P ++AC+ ++Y D++ DG I E 
Sbjct: 96  LSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEA 155

Query: 74  DFEQLIDYAEK 85
           + ++LIDYA K
Sbjct: 156 ELDKLIDYASK 166

The following BLAST results are available for this feature:

BLAST of Carg00038 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55185.1	2.1e-27	68.89	hypothetical protein Csa_4G639730 [Cucumis sativus]	[more]
POF10332.1	2.9e-13	46.15	calcium-binding allergen ole e 8 [Quercus suber]	[more]
XP_022951880.1	8.5e-13	51.39	calmodulin-like [Cucurbita moschata]	[more]
XP_004152805.1	1.9e-12	45.45	PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus]	[more]
KGN62516.1	1.9e-12	45.45	hypothetical protein Csa_2G358870 [Cucumis sativus]	[more]

BLAST of Carg00038 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76650.1	4.2e-06	34.29	calmodulin-like 38	[more]
AT3G50770.1	1.6e-05	35.38	calmodulin-like 41	[more]
AT2G43290.1	1.8e-04	28.79	Calcium-binding EF-hand family protein	[more]
AT3G51920.1	2.3e-04	33.87	calmodulin 9	[more]
AT1G76640.1	3.0e-04	34.92	Calcium-binding EF-hand family protein	[more]

BLAST of Carg00038 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SRE6\|CML38_ARATH	7.6e-05	34.29	Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=2 SV=1	[more]
sp\|Q0DJV6\|CML18_ORYSJ	9.9e-05	37.93	Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q8L3R2\|CML41_ARATH	2.9e-04	35.38	Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ...	[more]
sp\|Q39419\|POLC4_BETPN	2.9e-04	35.82	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
sp\|Q8VWY6\|POLC1_TOBAC	6.4e-04	39.29	Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1	[more]

BLAST of Carg00038 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZR6\|A0A0A0KZR6_CUCSA	1.4e-27	68.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1	[more]
tr\|A0A2P4LY04\|A0A2P4LY04_QUESU	1.9e-13	46.15	Calcium-binding allergen ole e 8 OS=Quercus suber OX=58331 GN=CFP56_50060 PE=4 S...	[more]
tr\|A0A0A0LRC1\|A0A0A0LRC1_CUCSA	1.3e-12	45.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1	[more]
tr\|A0A2P5F8Q2\|A0A2P5F8Q2_9ROSA	6.2e-12	48.00	Parvalbumin OS=Trema orientalis OX=63057 GN=TorRG33x02_099130 PE=4 SV=1	[more]
tr\|A0A0A0KMQ1\|A0A0A0KMQ1_CUCSA	1.1e-11	43.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00038-RA	Carg00038-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 19..44 e-value: 7.8E-6 score: 25.3
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 14..49 score: 13.398
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 63..85 score: 7.874
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 3..88 e-value: 2.0E-11 score: 45.7
None	No IPR available	PANTHER	PTHR44455	FAMILY NOT NAMED	coord: 10..85
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 27..39
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 63..75
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 6..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00038	CmaCh04G009210	Cucurbita maxima (Rimu)	carcmaB0948
Carg00038	CmoCh04G009900	Cucurbita moschata (Rifu)	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00038	Silver-seed gourd	carcarB255
Carg00038	Cucumber (Gy14) v2	carcgybB0659
Carg00038	Cucumber (Gy14) v1	carcgyB0740
Carg00038	Cucurbita maxima (Rimu)	carcmaB0946
Carg00038	Cucurbita moschata (Rifu)	carcmoB0920
Carg00038	Cucurbita pepo (Zucchini)	carcpeB0937
Carg00038	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00038	Wild cucumber (PI 183967)	carcpiB0696
Carg00038	Cucumber (Chinese Long) v2	carcuB0684
Carg00038	Cucumber (Chinese Long) v3	carcucB0698
Carg00038	Bottle gourd (USVL1VR-Ls)	carlsiB613
Carg00038	Bottle gourd (USVL1VR-Ls)	carlsiB616
Carg00038	Melon (DHL92) v3.5.1	carmeB0670
Carg00038	Melon (DHL92) v3.6.1	carmedB0683
Carg00038	Watermelon (Charleston Gray)	carwcgB0641
Carg00038	Watermelon (97103) v2	carwmbB0686
Carg00038	Watermelon (97103) v2	carwmbB0698
Carg00038	Wax gourd	carwgoB0779