CmaCh04G006780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G006780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionF-box SKIP8-like protein
LocationCma_Chr04 : 3456198 .. 3459325 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGCCGCTGCTGCCACCATTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTAACTTCTTCGACCTGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGACGCCGATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAACAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTACCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGTATAGGTTAGGTTTATTCTTCTTTTGTATGGTTTTCGTCTGAACTGCTGGAGTTGCGGTAATTTTTTTTTTCCTTCTGGAACCGAGGTAGAAACACGACGGGATTTCAGAATTGTGTACTTGGCAATTTGTTAAGAACTCTTGTTACCATCGTCTCGTCTACATTCATTCAATTACTTCAGCGTCTTCTAGTAATTCTGGGGGGAAACGAATTGGCTGTATTTTTATCATCGTTCCAGTTTATGGCTTGTGATCACAGTTCTTGGATTGACAGGAGCTACCTCTGTTCTTTGTTTGTGTACTGTTCTGGATGCTTAAATCTATTTCTCTGGGGCTAAAAGAACTTTTTCCATTAAATCTTCTAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAGCATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTACTTTCCTCATTGTCTCTCTCTCTCTATATAAATTTTGCTATATTTTTTGCCATGAAATCTGACAACACGTCTGACATTTGTTTATTTCAAGACTTGGGAGCTCGCATATATGACCCCTTTTTGTTGTCTCACTCGTCAGATCTTTACATATTTTAAGCATTTTTTTATTAAGAAGAAGGTGATATACAAGGGATTATCAGAAATGACATGAGCCAAATTTGGGTGCTAATGGCTATCTGATTACTGTCATGAGCCAAATTTTTGAAAAATCAAAAAATAGTTTTTAAAAACTTGTTTTGCCTTTTATAATTTTGGCTAAGAATTCAAACATTTTTTTTTTTTTAAGAAATGTGAAAACCATAGTAAAGAAATTGCAAGGGAACAAACAAAATTTTCAAAAACAGAAATCTAAAATTAAAATTGTTATTAAATGGCCAAGTTTTTAGTAGTTTTGTTCTATAGAGCATTTGAGGACAATAATTTATTATCAATGTTGAGGCCGGCAATAGACCTTAACCTCGTGTCTCATTGTCACTTGATAAAGCAATTTTATGAGACTTCGGATAAAGGGCCAATATGTGCGTAGGTTGCCTCAACTATTTGTGGTAGACCGGTGCTGCATTATGGGCTTTGTTCTTTTTGAATCTTGCTGTATCTAAATGTTTCTTGTGGGAAAGATTTTGCCATGTGCATGGTTAACTACATTACATGATTAATGCTGCGTTTATTTACTTGGCCTTCTAGGACAAAAGCAAATGTGTTACGTTAGTGTGAAGCTATGAGGAATAAGGATGTAGAATATATCCATTAATTTGTATTAATCTTCTAACTTCAACTTAGACTAGATGATATATTATTATACATTGACTTGCATAAACTTCGGCATGTCAATTGGTAGACCTGTTGACATGGGTTAACCCCACATCAATTTCATAACGCAGCTTCAGCACAAGGAACTGATAAGGTGGAACTTTCCTGATAATTTCGCAAGTAACCTTTGCGATCAACAAAGACACACTAATTTTAGGGGTGAACTATGTTGAAGGGATTGATTATTGAACCTGTCACGTTGCTATGTCTAGATGGTATGATATAAACAATTTATTGTGAAAGGCTATGTATGTATGTTATTTTATGCAATTACTCTATGAATTCCTATTATATGTTGAGTTAAAGCTTTCAAATAAATTCATATAATCTAGTACTTAACATGTTGGGGTTTTCCTTTTAACAGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAAGAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGATGTGGAAGAACAAATGGTTCATGGGTAACAGAGCAAAGATAGAAGAGAAGAAAACCATGAAAATATAGAATTACTAGGTCAAAGATAGGTGATGTCTGGTAGCAGAAGCAAGATTACTTCTTAACAGCACCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAATGTTCTGGTCCCTAATTCTTTTGTTGGTTCAGAGGTTTCAGGAATGGAATTCAATCCTGGGAATGAGGTATATGATGAGTTTTAGAAGTATTTTTGGTTGGTTTGGTTCATGCTCAAATGGCTGCTGCATGTGTTTAAACCAATGAAGGATCATCCCCATTATCTGTACTTTAATTTCTTGATCGATTGACTGCTACACTTCGACAGGTAGATGACTTGTTCAATAACTTATGTGTAAAGAAGAAAGGATAAGCAACTTTGGATGAGACTCTATTGCAAATGTGTAAGATTTTCTATTCAGAAACGCCCAATGTTAAAGCATGATGGGGGGTAATGCCTGTTGGTTAAATGGGGTTTTGCATCAAATCTACTTTTTTTTTGGTTAAATTAGAAATGCCCCCTATGTTTCGAT

mRNA sequence

ATGGAGATTGCCGCTGCTGCCACCATTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTAACTTCTTCGACCTGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGACGCCGATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAACAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTACCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAGCATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAAGAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGATGTGGAAGAACAAATGGTTCATGGGTAACAGAGCAAAGATAGAAGAGAAGAAAACCATGAAAATATAGAATTACTAGGTCAAAGATAGGTGATGTCTGGTAGCAGAAGCAAGATTACTTCTTAACAGCACCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAATGTTCTGGTCCCTAATTCTTTTGTTGGTTCAGAGGTTTCAGGAATGGAATTCAATCCTGGGAATGAGGTATATGATGAGTTTTAGAAGTATTTTTGGTTGGTTTGGTTCATGCTCAAATGGCTGCTGCATGTGTTTAAACCAATGAAGGATCATCCCCATTATCTGTACTTTAATTTCTTGATCGATTGACTGCTACACTTCGACAGGTAGATGACTTGTTCAATAACTTATGTGTAAAGAAGAAAGGATAAGCAACTTTGGATGAGACTCTATTGCAAATGTGTAAGATTTTCTATTCAGAAACGCCCAATGTTAAAGCATGATGGGGGGTAATGCCTGTTGGTTAAATGGGGTTTTGCATCAAATCTACTTTTTTTTTGGTTAAATTAGAAATGCCCCCTATGTTTCGAT

Coding sequence (CDS)

ATGGAGATTGCCGCTGCTGCCACCATTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTAACTTCTTCGACCTGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGACGCCGATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAACAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTACCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAGCATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAAGAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGATGTGGAAGAACAAATGGTTCATGGGTAA

Protein sequence

MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGDVEEQMVHG
Homology
[Close]
BLAST of CmaCh04G006780 vs. Swiss-Prot
Match: SKIP8_ARATH (F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 4.8e-91
Identity = 153/211 (72.51%), Postives = 182/211 (86.26%), Query Frame = 1 

Query: 102 TPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 161
           T   V + + G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH
Sbjct: 23  TTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 82

Query: 162 KDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHA 221
           KDF+LEQD +TP+NGWK YYA TR I+++N +F +IIR+R+LQAM+  WLN+DYVKCIHA
Sbjct: 83  KDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHA 142

Query: 222 SGEFFSGYNAVIQSWQVAFNWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN 281
           SGE FSGYN VIQSWQ+ FNWE+G +FQV  VR R+LTDMAWV+MK Y+++D GPF +TN
Sbjct: 143 SGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITN 202

Query: 282 VYEYHNGRWYMVHHHSSVMLIVGDVEEQMVH 313
           V+E+HNGRW+MVHHHSSVMLI  D ++ +VH
Sbjct: 203 VFEFHNGRWHMVHHHSSVMLI--DDQQVVVH 231

[Close]
BLAST of CmaCh04G006780 vs. Swiss-Prot
Match: FB335_ARATH (Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-34
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 115 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPI 174
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++F+ E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 175 NGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGY 230
           NGWKA++A T+ +M +N +F SI+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]
BLAST of CmaCh04G006780 vs. TrEMBL
Match: A0A0A0KX34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052690 PE=4 SV=1)

HSP 1 Score: 584.3 bits (1505), Expect = 8.6e-164
Identity = 283/313 (90.42%), Postives = 302/313 (96.49%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCN 60
           MEI ++ATIAL SQPFPIAAIVTFLCFLLA+F AVRLVSVP+IRRTK LQSE +GTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLV 120
           CTCSLNGGVVI GLDPRAE+TSST T+MPYLNGR VEVLEK P+VVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240
           YAATRTIMNINAQF +IIR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVM 300
           NWE+GINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGDVEEQMVHG 314
           LIVG++E+QMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]
BLAST of CmaCh04G006780 vs. TrEMBL
Match: W9S3I3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003143 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 3.8e-111
Identity = 220/317 (69.40%), Postives = 246/317 (77.60%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRN-- 60
           MEI  + + AL SQ   +A + T LCF L LF+A  L   P     + LQS+G   R+  
Sbjct: 1   MEIFPSLSTALSSQSLFVAIVFTALCFFLVLFSARSLPLWP-----RLLQSDGGEKRSEK 60

Query: 61  -CNCTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMME 120
            C+C C  NG V  GG         S   T PYLNG   E+ E  P V+ ERQTGASMME
Sbjct: 61  LCDCRCCCNGSV--GGC--------SEGETAPYLNG--TEMAENWP-VLRERQTGASMME 120

Query: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGW 180
           QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD VTP+NGW
Sbjct: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDNVTPVNGW 180

Query: 181 KAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQ 240
           KAYYAATR I+N+N +F +IIR+RSLQAMS FWLNADYVKC+HASG  FSGYNAVI SWQ
Sbjct: 181 KAYYAATRAIVNVNNEFFNIIRDRSLQAMSRFWLNADYVKCVHASGNLFSGYNAVIHSWQ 240

Query: 241 VAFNWEEGINFQVRDVRARVLTDMAWVSMKTYV-DMDTGPFNVTNVYEYHNGRWYMVHHH 300
            AFNWE+GINFQVRDVRARVLTDMAWVSMKTYV D+D GPFNVTNV+E+HNGRWYMVHHH
Sbjct: 241 FAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDDVDIGPFNVTNVFEFHNGRWYMVHHH 297

Query: 301 SSVMLIVGDVEEQMVHG 314
           SSVM   G+VE+Q+VHG
Sbjct: 301 SSVM--DGEVEQQIVHG 297

[Close]
BLAST of CmaCh04G006780 vs. TrEMBL
Match: K7KRV8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G217900 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 2.1e-109
Identity = 203/305 (66.56%), Postives = 237/305 (77.70%), Query Frame = 1 

Query: 13  SQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVVIG 72
           S+PF +A  VT LCFL ALFA         +R + +L       R  +C C+ N      
Sbjct: 8   SEPFLVALAVTALCFLFALFA--------LLRSSFSLPRRFTPPRKHHCDCASN------ 67

Query: 73  GLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPM----VVTERQTGASMMEQLVPEITTHAL 132
                     S    +PYLNG   E+LE +P+    V+TER+TG+SMME+LVPEITTHAL
Sbjct: 68  ----------SDAGAVPYLNGGCTEMLEPSPVPAPAVLTERRTGSSMMEELVPEITTHAL 127

Query: 133 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIM 192
           SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD+VTP NGWKAYYAATR I+
Sbjct: 128 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIV 187

Query: 193 NINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEEGINF 252
           NIN +F +I+R++SLQAMS FWLNADYVKCIHASGE FSGYNAV+QSWQ+AFNWE+G+N 
Sbjct: 188 NINTEFFNIVRDKSLQAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLNT 247

Query: 253 QVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGDVEE 312
           QV+DVRAR+LTDMAWV+MKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHS VM   GDV+ 
Sbjct: 248 QVQDVRARILTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSCVM--NGDVDL 286

Query: 313 QMVHG 314
            +VHG
Sbjct: 308 MIVHG 286

[Close]
BLAST of CmaCh04G006780 vs. TrEMBL
Match: I1KPL5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G024000 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-108
Identity = 202/305 (66.23%), Postives = 236/305 (77.38%), Query Frame = 1 

Query: 13  SQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVVIG 72
           S+PF +A  VT LCFL ALF+         +R + +L       R  +C C+ N      
Sbjct: 8   SEPFLVALAVTALCFLFALFS--------LLRSSFSLPRRFTPPRKHHCDCTSN------ 67

Query: 73  GLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPM----VVTERQTGASMMEQLVPEITTHAL 132
                     S    +PYLNG   E+LE +P+    V+TER+ G+SMME+LVPEITTHAL
Sbjct: 68  ----------SDAAAVPYLNGGRTEMLEPSPVPAPAVLTERRMGSSMMEELVPEITTHAL 127

Query: 133 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIM 192
           SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD++TP NGWKAYYAATR I+
Sbjct: 128 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSITPTNGWKAYYAATRAIV 187

Query: 193 NINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEEGINF 252
           NIN +F +I+R++SLQAMSHFWLNADYVKCIHASG FFSGYNAV+Q WQ+ FNWE+G+NF
Sbjct: 188 NINTEFFNIVRDKSLQAMSHFWLNADYVKCIHASG-FFSGYNAVMQGWQLVFNWEQGLNF 247

Query: 253 QVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGDVEE 312
           QVRDV ARVLTDMAWV+MKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHSSV    GDV+ 
Sbjct: 248 QVRDVCARVLTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSV---DGDVDH 284

Query: 313 QMVHG 314
           Q+VHG
Sbjct: 308 QIVHG 284

[Close]
BLAST of CmaCh04G006780 vs. TrEMBL
Match: D7TVH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01680 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.9e-108
Identity = 198/303 (65.35%), Postives = 246/303 (81.19%), Query Frame = 1 

Query: 16  FPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGT-----RNCNCTCSLNGGVV 75
           F +A +V+ LC + ALFA VR     F R++++++S+G G+     + C+C C       
Sbjct: 34  FLVALVVSGLCLVCALFA-VRFSPASFGRKSRSVESDGGGSGGSLRKACSCDCLCRSA-- 93

Query: 76  IGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLVPEITTHALSY 135
                  +   ++T     YLNG   E+L++  +VV+ERQTGASMMEQLVPEITTHALSY
Sbjct: 94  ------ESGPATATAAAAAYLNGGAEEMLDRA-LVVSERQTGASMMEQLVPEITTHALSY 153

Query: 136 LDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNI 195
           LDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD+VTP NGWKAYYAATR I+NI
Sbjct: 154 LDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNI 213

Query: 196 NAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEEGINFQV 255
           NA+F +IIRERS+ +MS  W NADYVKC+HASGE F+GYNAVI+SWQ+AFNW++G++FQV
Sbjct: 214 NAEFFNIIRERSITSMSRLWFNADYVKCVHASGELFTGYNAVIESWQLAFNWDQGVDFQV 273

Query: 256 RDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGDVEEQM 314
           RDVRARVLTDMAWV+MKT+VDM+TGPFNVTNV+E+HNGRW+MVHHHSSV LI G+V++Q+
Sbjct: 274 RDVRARVLTDMAWVTMKTFVDMETGPFNVTNVFEFHNGRWFMVHHHSSV-LIDGEVDQQI 325

[Close]
BLAST of CmaCh04G006780 vs. TAIR10
Match: AT4G10925.1 (AT4G10925.1 Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 335.9 bits (860), Expect = 2.7e-92
Identity = 153/211 (72.51%), Postives = 182/211 (86.26%), Query Frame = 1 

Query: 102 TPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 161
           T   V + + G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH
Sbjct: 23  TTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH 82

Query: 162 KDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHA 221
           KDF+LEQD +TP+NGWK YYA TR I+++N +F +IIR+R+LQAM+  WLN+DYVKCIHA
Sbjct: 83  KDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHA 142

Query: 222 SGEFFSGYNAVIQSWQVAFNWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN 281
           SGE FSGYN VIQSWQ+ FNWE+G +FQV  VR R+LTDMAWV+MK Y+++D GPF +TN
Sbjct: 143 SGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITN 202

Query: 282 VYEYHNGRWYMVHHHSSVMLIVGDVEEQMVH 313
           V+E+HNGRW+MVHHHSSVMLI  D ++ +VH
Sbjct: 203 VFEFHNGRWHMVHHHSSVMLI--DDQQVVVH 231

[Close]
BLAST of CmaCh04G006780 vs. TAIR10
Match: AT4G23960.1 (AT4G23960.1 F-box family protein)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 66/115 (57.39%), Postives = 88/115 (76.52%), Query Frame = 1 

Query: 115 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPI 174
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++F+ E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 175 NGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGY 230
           NGWKA++A T+ +M +N +F SI+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]
BLAST of CmaCh04G006780 vs. NCBI nr
Match: gi|449462569|ref|XP_004149013.1| (PREDICTED: F-box protein SKIP8 [Cucumis sativus])

HSP 1 Score: 584.3 bits (1505), Expect = 1.2e-163
Identity = 283/313 (90.42%), Postives = 302/313 (96.49%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCN 60
           MEI ++ATIAL SQPFPIAAIVTFLCFLLA+F AVRLVSVP+IRRTK LQSE +GTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLV 120
           CTCSLNGGVVI GLDPRAE+TSST T+MPYLNGR VEVLEK P+VVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240
           YAATRTIMNINAQF +IIR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVM 300
           NWE+GINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGDVEEQMVHG 314
           LIVG++E+QMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]
BLAST of CmaCh04G006780 vs. NCBI nr
Match: gi|659102060|ref|XP_008451931.1| (PREDICTED: F-box protein SKIP8 [Cucumis melo])

HSP 1 Score: 582.8 bits (1501), Expect = 3.6e-163
Identity = 282/313 (90.10%), Postives = 303/313 (96.81%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCN 60
           MEI ++ATIAL SQPFPIAAI+TFLCFLLA+F AVRLVSVP+IRRTK+LQSE +GTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLV 120
           CTCSLNGGVVI GLDPRAE+TSST T+MPYLNGR VEVLEK P+VVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240
           YAATRTIMNINAQF +IIR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAVIQSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEEGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVM 300
           NWE+GINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN+YE+H+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 LIVGDVEEQMVHG 314
           LIVG++E+QMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]
BLAST of CmaCh04G006780 vs. NCBI nr
Match: gi|703150142|ref|XP_010109783.1| (hypothetical protein L484_003143 [Morus notabilis])

HSP 1 Score: 409.5 bits (1051), Expect = 5.4e-111
Identity = 220/317 (69.40%), Postives = 246/317 (77.60%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRN-- 60
           MEI  + + AL SQ   +A + T LCF L LF+A  L   P     + LQS+G   R+  
Sbjct: 1   MEIFPSLSTALSSQSLFVAIVFTALCFFLVLFSARSLPLWP-----RLLQSDGGEKRSEK 60

Query: 61  -CNCTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPMVVTERQTGASMME 120
            C+C C  NG V  GG         S   T PYLNG   E+ E  P V+ ERQTGASMME
Sbjct: 61  LCDCRCCCNGSV--GGC--------SEGETAPYLNG--TEMAENWP-VLRERQTGASMME 120

Query: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGW 180
           QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD VTP+NGW
Sbjct: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDNVTPVNGW 180

Query: 181 KAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQ 240
           KAYYAATR I+N+N +F +IIR+RSLQAMS FWLNADYVKC+HASG  FSGYNAVI SWQ
Sbjct: 181 KAYYAATRAIVNVNNEFFNIIRDRSLQAMSRFWLNADYVKCVHASGNLFSGYNAVIHSWQ 240

Query: 241 VAFNWEEGINFQVRDVRARVLTDMAWVSMKTYV-DMDTGPFNVTNVYEYHNGRWYMVHHH 300
            AFNWE+GINFQVRDVRARVLTDMAWVSMKTYV D+D GPFNVTNV+E+HNGRWYMVHHH
Sbjct: 241 FAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDDVDIGPFNVTNVFEFHNGRWYMVHHH 297

Query: 301 SSVMLIVGDVEEQMVHG 314
           SSVM   G+VE+Q+VHG
Sbjct: 301 SSVM--DGEVEQQIVHG 297

[Close]
BLAST of CmaCh04G006780 vs. NCBI nr
Match: gi|1009156017|ref|XP_015896020.1| (PREDICTED: F-box protein SKIP8 [Ziziphus jujuba])

HSP 1 Score: 406.4 bits (1043), Expect = 4.6e-110
Identity = 221/330 (66.97%), Postives = 254/330 (76.97%), Query Frame = 1 

Query: 1   MEIAAAATIALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGT---- 60
           MEIA++   A  SQP  IAA+ T LCFLLALF  VR  ++   +    L+ +G G+    
Sbjct: 1   MEIASSLFTAFSSQPLFIAAVFTALCFLLALFT-VRSFALTITK----LKLDGRGSGGEA 60

Query: 61  ---RN------CNCTCSLNGGVVIGGLDPRAEVTSSTCTTMPYLNGR---VVEVLEKTPM 120
              RN      C+C      GVV+G          S     PYLNG      ++LEKTP 
Sbjct: 61  SVRRNKKKGKLCDCRYCCCNGVVLG----------SDSDIAPYLNGGCGGTADMLEKTP- 120

Query: 121 VVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 180
           VVTE+QTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF
Sbjct: 121 VVTEKQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 180

Query: 181 SLEQDTVTPINGWKAYYAATRTIMNINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGE 240
           +LEQD VTPINGWKAYYAATR I+NIN +F +IIRE+SL +MS FWLNADYVKC+HA+GE
Sbjct: 181 TLEQDGVTPINGWKAYYAATRAIVNINTEFFNIIREKSLPSMSRFWLNADYVKCVHATGE 240

Query: 241 FFSGYNAVIQSWQVAFNWEEG-INFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVY 300
            FSGY+AVIQSWQ+AFNWE+G INFQVRDVRARVLTDMAWV+MKTYVDMDTGPFN+TN++
Sbjct: 241 LFSGYDAVIQSWQLAFNWEQGAINFQVRDVRARVLTDMAWVTMKTYVDMDTGPFNMTNIF 300

Query: 301 EYHNGRWYMVHHHSSVMLIVGDVEEQMVHG 314
           E+HNGRWYMVHHHSSVM   G + +Q+VHG
Sbjct: 301 EFHNGRWYMVHHHSSVM--DGGMVQQIVHG 312

[Close]
BLAST of CmaCh04G006780 vs. NCBI nr
Match: gi|356511437|ref|XP_003524433.1| (PREDICTED: F-box protein SKIP8 [Glycine max])

HSP 1 Score: 403.7 bits (1036), Expect = 3.0e-109
Identity = 203/305 (66.56%), Postives = 237/305 (77.70%), Query Frame = 1 

Query: 13  SQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVVIG 72
           S+PF +A  VT LCFL ALFA         +R + +L       R  +C C+ N      
Sbjct: 8   SEPFLVALAVTALCFLFALFA--------LLRSSFSLPRRFTPPRKHHCDCASN------ 67

Query: 73  GLDPRAEVTSSTCTTMPYLNGRVVEVLEKTPM----VVTERQTGASMMEQLVPEITTHAL 132
                     S    +PYLNG   E+LE +P+    V+TER+TG+SMME+LVPEITTHAL
Sbjct: 68  ----------SDAGAVPYLNGGCTEMLEPSPVPAPAVLTERRTGSSMMEELVPEITTHAL 127

Query: 133 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIM 192
           SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQD+VTP NGWKAYYAATR I+
Sbjct: 128 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIV 187

Query: 193 NINAQFCSIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEEGINF 252
           NIN +F +I+R++SLQAMS FWLNADYVKCIHASGE FSGYNAV+QSWQ+AFNWE+G+N 
Sbjct: 188 NINTEFFNIVRDKSLQAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLNT 247

Query: 253 QVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGDVEE 312
           QV+DVRAR+LTDMAWV+MKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHS VM   GDV+ 
Sbjct: 248 QVQDVRARILTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSCVM--NGDVDL 286

Query: 313 QMVHG 314
            +VHG
Sbjct: 308 MIVHG 286

The following BLAST results are available for this feature:
BLAST of CmaCh04G006780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SKIP8_ARATH4.8e-9172.51F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1[more]
FB335_ARATH1.9e-3457.39Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=3 SV=1[more]
BLAST of CmaCh04G006780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KX34_CUCSA8.6e-16490.42Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052690 PE=4 SV=1[more]
W9S3I3_9ROSA3.8e-11169.40Uncharacterized protein OS=Morus notabilis GN=L484_003143 PE=4 SV=1[more]
K7KRV8_SOYBN2.1e-10966.56Uncharacterized protein OS=Glycine max GN=GLYMA_05G217900 PE=4 SV=1[more]
I1KPL5_SOYBN2.3e-10866.23Uncharacterized protein OS=Glycine max GN=GLYMA_08G024000 PE=4 SV=1[more]
D7TVH9_VITVI3.9e-10865.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01680 PE=4 SV=... [more]
BLAST of CmaCh04G006780 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10925.12.7e-9272.51 Nuclear transport factor 2 (NTF2) family protein[more]
AT4G23960.11.0e-3557.39 F-box family protein[more]
BLAST of CmaCh04G006780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462569|ref|XP_004149013.1|1.2e-16390.42PREDICTED: F-box protein SKIP8 [Cucumis sativus][more]
gi|659102060|ref|XP_008451931.1|3.6e-16390.10PREDICTED: F-box protein SKIP8 [Cucumis melo][more]
gi|703150142|ref|XP_010109783.1|5.4e-11169.40hypothetical protein L484_003143 [Morus notabilis][more]
gi|1009156017|ref|XP_015896020.1|4.6e-11066.97PREDICTED: F-box protein SKIP8 [Ziziphus jujuba][more]
gi|356511437|ref|XP_003524433.1|3.0e-10966.56PREDICTED: F-box protein SKIP8 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR009959Polyketide cyclase SnoaL-like domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G006780.1CmaCh04G006780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROFILEPS50181FBOXcoord: 113..159
score: 8
IPR001810F-box domainunknownSSF81383F-box domaincoord: 269..294
score: 5.4E-15coord: 112..186
score: 5.4
IPR009959Polyketide cyclase SnoaL-like domainPFAMPF13474SnoaL_3coord: 187..300
score: 2.6
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 116..182
score: 7.3
NoneNo IPR availablePANTHERPTHR15537FAMILY NOT NAMEDcoord: 82..313
score: 6.9E-170coord: 16..65
score: 6.9E
NoneNo IPR availablePANTHERPTHR15537:SF4SUBFAMILY NOT NAMEDcoord: 82..313
score: 6.9E-170coord: 16..65
score: 6.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G006780Cucsa.114900Cucumber (Gy14) v1cgycmaB0279
CmaCh04G006780Cla012814Watermelon (97103) v1cmawmB694
CmaCh04G006780Csa4G052690Cucumber (Chinese Long) v2cmacuB713
CmaCh04G006780MELO3C016277Melon (DHL92) v3.5.1cmameB694
CmaCh04G006780ClCG07G011500Watermelon (Charleston Gray)cmawcgB671
CmaCh04G006780CSPI04G06500Wild cucumber (PI 183967)cmacpiB721
CmaCh04G006780CmoCh16G005900Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G006780Lsi07G007290Bottle gourd (USVL1VR-Ls)cmalsiB699
CmaCh04G006780Cp4.1LG14g02700Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G006780Cp4.1LG01g00510Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G006780MELO3C016277.2Melon (DHL92) v3.6.1cmamedB782
CmaCh04G006780CsaV3_4G006720Cucumber (Chinese Long) v3cmacucB0847
CmaCh04G006780Cla97C07G138260Watermelon (97103) v2cmawmbB776
CmaCh04G006780CsGy4G006430Cucumber (Gy14) v2cgybcmaB547
CmaCh04G006780Carg13080Silver-seed gourdcarcmaB0055
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G006780CmaCh16G005380Cucurbita maxima (Rimu)cmacmaB350
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G006780Bottle gourd (USVL1VR-Ls)cmalsiB624
CmaCh04G006780Cucumber (Gy14) v2cgybcmaB661
CmaCh04G006780Melon (DHL92) v3.6.1cmamedB724
CmaCh04G006780Silver-seed gourdcarcmaB0509
CmaCh04G006780Cucumber (Chinese Long) v3cmacucB0872
CmaCh04G006780Watermelon (97103) v2cmawmbB706
CmaCh04G006780Wax gourdcmawgoB0829
CmaCh04G006780Wax gourdcmawgoB0853
CmaCh04G006780Cucurbita maxima (Rimu)cmacmaB328
CmaCh04G006780Cucurbita moschata (Rifu)cmacmoB697
CmaCh04G006780Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G006780Melon (DHL92) v3.5.1cmameB638
CmaCh04G006780Watermelon (Charleston Gray)cmawcgB635
CmaCh04G006780Watermelon (97103) v1cmawmB712