Cp4.1LG01g00510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	F-box protein SKIP8
Location	Cp4.1LG01 : 3528447 .. 3536924 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAATCTAATCGATAGGAATCTTAATGTAGGTTCGATTGTGTCCTGCACAAAGATGACCTAGTATCAGTGGTGTTGTTTCTAATACCCTTTTATGCATACTTAATGACGTTATTGAGTTGAATTTAGGATATGTTGTGTGTCTTTTGTGGAAGTTTGCTTTCCAACGTGAATCTTTCCGTTCTTGGTAGTCAACACGCTTCTTGACTCAACTTCTAAACCTTGAGGAACGTGTTTTACCTCTTTAAGTAGTTTGGGCCTTTCGAACCTCTCCGTTTGCTTTGGGAGCTTCGCTTGTGTACATGCACTTGAATCGAGTAGAACAAAATTTATACACCCTATTGTTCGGTATTAAATGAAAATTAAGATTAAAAAAACCCTAAATATGATTTTTTTTTTTTAAGGGTAATTTTTCCTATTTTATTTTATACTTAGTTGAAACCGTTATCTTCCCGCCTAATTCAAACACAATCTCTCTCTAATTGCCCTAATCTTCATCCTCATTTCCATCATTGTTCTTCAATCAACAGCTCTGCTAAACCCTAAAGATTACAATCCTTTGGCGCCGAGTTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCGACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTCGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGTTTTGTAATGGAAGAATACCCGTCGATTTTCCTGGTAATGTTGGTTTAGATTCTTGATATTTTGTTTGTTTGTTTGTTTGTTTATGATTTGATTTAGTCATTTATTGTAGGTCTGATCTCTGTTTTTTGTTCACTCCGTCTGGTGATTTCTGAATTTCCGATTTGATCTTTTATTTCTCTTTCGTTTTAAATTTCTGGATGGTCATTTCGCCCTGCGTCTTGGACTTCCTTTTGTTCAGAGTTATCTTTGGCATGCCGGAACGTGGAAGATATGATTTAAGGAGTGAATTATGCATCAGCTAGTGCTAGAGTTATCTTCACTAGTGGATCGGAATTGGTACTTCTTTTTCTTCAATTTCAACAAGTTGTATCAATTGATTAAAATCATCGAGAAAAGTTTTAAGCAAATGGATCAGTTTCAAATCAAATGACCTAGGCTTCGATAACTGGATTGAATTGTTCAATTATTTCCATTTCTTTCATCATTTTAATGTTCATTTATAATCTTACGTTGATTTAGATGGTAGATATCATCGCAGTTATATGACTTCTAACATTATCCGCCAAGGATATGGAATTATAAGTCGGTGTTATGGTTTATATTTCTCATACTCTCTTGCCTTTTTGAAATCAACACATTTCCTTCACACAGAAATTTCAGCAATTTATGAACACTTTTCAGCAGAAAGCTGCTGCCTATCACATTTCTCACTCAGTCTTTTACATATCTATTGGAATCAACGATTACATTCACTACTATCTGTTTAACATATCTAGTGTGCAAAATATGTACCCTCCATGGAGTTTTAACCAATTTTTGGCAACCACAATCAGACAGGAAATCAAGGTGTAATTTGATTACATAGTTCTTATTGTATCATTTCGTTAATCTAAGCTGGAATAAAAGGCAAGTATATATAGCCATCAGGCATGATTCCATCTCAAACCTTCAAGATATTGTTTTTATTCTCATTATAATTTTTCAAAATTTGTGCTCTTGAATCATTTTAGATATTTTCCATTAACCCTATATTGCATCTTGGGTGCTGCTCCTCCCCTGCTTAAGTTAGATTTCTTTCCATAGTATCTTCTGTTACCTGTCTTGATGTATCAATTGTTCATAAACTTCCTAAAATATTCTGTATTCGTGGTCCAGAACTTGTATAAATGGATGCTAGGAGAACTATTGTAATGGGATTGGCACCTATTGGATGTGCTCCTTACTACCTATGGCTATACGGTAGTGAAAATGGAGAGTGTATTGAAGAGATAAATGACATGGTTATGGAGTTTAAGGTTCCATGAGATACGTGATTGAGGAGCTCGGCATGGAAGTGCCTGATTCAAATATTATCTTCTGTGTTTTGCTTCAAGGCTCACTGGATATTCTGAAGAACATGAATGTTACCGTGAATGACAATCTAACTTCCTTTCATTTCCTCCGCCATGAATCGAATTCGCGTCTCATTGTGTCATTTTGTTTTCATCTAGGTTTCAATGTAACTACTGATGCTTGTTGTGGGTTTGGTCGCTACAATGGTTGGATCATATGCACCGCTTATGGCTTGCAAAAAAGTTTCTAATCATATTTGGTCGGATCAATTCCATCCAACTGATGCAGTGAATGCCATTCTTGCAGACAATGTGTGGAATGACCTCCATACAACAATGTACTATCCTAAGAACTTGAAGGAGGTGATAACTCTCAAGGGCCATATGATACTCTGATCAGACTTGTCCATTCACAAAGCTGCACATACAATTCAACATAATACCCGGTACCATCCAACCCCTTCACAATTCATATTGTCTTTGTCTATTAGTGAATAGAAAGCAGTGAGAGATAAATGGACTAGTAGAATTTCAAATGCTATGCTTGCTTTATAAGAGTATGGTGGGGCTCATTTTGTGATTGATGGGGATTGAAATAAGATAATTGCTTTTATTTTGCTCCAGTGGTCCAACATCTACTATATAAATCCTCTGCAGTGTTTGACCTTGGGAGGAACTAGTGTAATCCATTAATCGAGATGAATTAACCAAACTGAGCAAAAGGGTTGATAGGACAGAAAAATATTGTAGGTTGGTCCTATTATTTTGTTCAATTATCAACCAAATGCAACCAAATGCAACCAAATGCAGCATGTTTCTAGCATGTGGAGGTTATAGATTCAGAAGGTAAAAAGAAAAGTTTATAAATAAGATTCTTCACGTGTCTTGATATTTTGGATCACACAATAAAGTTAGATAATGTGGGTATTTTTTTTAAATGAAGGTACTTTGGTTTTGAATGATTATAGTAGAACGTGGATCCGATTATAGTTTATATACGATATTAATTACTATCTTAAAAGTTAATGGTTCGAGTCTTATTCATTTTTGCTAAACTAAAAAAATAGAGTGTTTTTATAAATTCCTAACCGTGTTTTTTAATTTGGATTTATACACATGTTGAGCTCACCAAAGAAAAGAAGGTTTGTAGAAGGTATGGCTTGACCCAGAAGACAATATGCAGTACATTATTTGAAAATCGTGCCATTTAATAAGTTTGATCTACATGGTCAAATGACACCATTATAAATCAACTTGATTGTAGATTCAGTACATTATGTTGTAGGTTGACAACTTGAAACACATTACCGCAGTTGCAGGTCTGTAGATTTTTTTTTCTACCACAGTTGGAAAAAGTGGTTTTATTAGTCGTTCTTTTTTGATCAATTGCCAATTGAAGTACTTTTCTATAAACTCCTTGGCCTGTGGGTGGATATCTATCTCATATCTTTTTTGTATTGGCTTACCAGCCTTGGGCTCTAAATGTAATTGATTTCTTATCTAAGAAAAATATATCTGCAGAGACTGTCACAAGTTGTATTTGGTTGGCTTGATGATGAATCATACATGTTTGAGCGGCAACCACATTTACTTCACCGTCTTCAGGTTTGCTAATATTGAACTCATCTTTCCCTTTTAGATTGTATCTTTTCTTTCTTTCTTTTTTTAATCCTGAACTTTTAACAAGAGTGCGCTCATCCCTTTGTAGGTTTTACTTGGAGGCAGGGCCGCAGAAGAGGTCACCTATGGACGAGACACATCAAATGCATCGTTTAGCTATCCTGCCAATGCGCCATGGCTCGCTCGTAAAATTTTAAGAATGTTAGGTAACTCCTCGATTTCAAATTGCTTGCTTTTGACTTGCACTGACTACCCTTGGTGTCATTAGCTAAAATGGATGGCTGCTTCTATTCCATAGTTGTAATATGGAGAATCCCTTGGTGATACATGGAGGAAGAACGAGAGCGAGAACGAGAACATGATTTCGAGTACGTTGCCATTTGTCAGTCGACAAGTGAAGCTTGAGAAGGATGCAAAATCTGTATGTTCTTTGTTATGACCTCTCATTGTCATGCCTCTGTTCTTGCAATGGCTGCTCGCTTTTTGCCGTTTTGCATCAGTTAAATTGAGATAGAAAAGATCGTCAAATTATGCTCTCTCTAAAGAGCTTGAAGCTTGCAGGAGAGTTCTCTCTACAAAAATCATCATTTTCTTAAGCTCATAGGTAAACATTTTCAATTCTATTTTATTTGCATCTTTATATTTTTAATTATTCTATTTTTCCTACATGCTTACTGGTTTGTCATTAAAATTTTGCATTAATCAAATTTCTAATCCTTCATTTTTACCATTTAATACGAGCTACAATAATTAGAGATTCGAATCTCCATACTCTATTATTTTGATATGGAATAAAATTAAAATAATTTTATTTATGTAAAGTTGATGACTAAAATAGGATTATTTTAAATTTGAAGATAGGATTATTTAATAATTACCTTTTTGTTATAAAAATTCATCCAATCAAAACATATCTCACTTTTGATTTGATTTTTGTAATGGCATTCAAATTAATCAACATACTTTTTCATAACAAATAAAACAAAACTAGAATTAAGGCCATATAGTATCTTAATTATGTCATTAATTAATGAAATTAATCATACAGTTTTACAATAGCAAGGAGGCGAAATTACGAAAATACCCCCACGATTAACTGACTGATAGAGAAGTTTCACACGTTTGGAAAATTTTCCCTTTTTTCTCGTCTGTTACGATACCGCTCACGGGTCTGGTCACTAACCAAAACCTCCTCCTCCTCCACCTCTCCGATTCAACTGAAATTCCGATTCCGTCACCGGAGGTCATTTCCGCGACGTCATCTCCGGCGCCGGCCAACGCATTTCATGTTCCAAACTCCATAGTTGATTGTTTATTCTACGGTTTGGCTTCTTCTCTTGTCGACGGCGTGTTTACTGACCTCCCGCTGAAAACTGGACGCCATAGATTTTCTAGGGTTTCATGTTCTGTGAGGTTCAAAGTCATACTCATACAGAGGCTTTCATGTCGTCCGAATGGAGATTGCCTCTGCTGCCACCATTGCCTTCTGATCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGATTATTGGGGGTTTGGACCCCAGGGCTGAAGTAACTTCTTTGACCGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGACGCCAATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCACAAGGTATAGGTTAGGTTTACTCTTCTTTTGTATGGTTTTCGTCTGAACTGCTGGAGTTGCGGTAATTTTTTTTTCTTCTGGAAGATGAGTACCGAGGTAGAAACACGACGGGATTTCAGAATTGTGTGTACTTGGCAATTTGTTAAGAACTCTTACTACCATCGTCTCGTCTACATTCATTCCATTACTTCAGCGTCTTCTAGTAATTCTGGGGGGAAACGAATTGGCTGTATTTTTATCTTTCAAGTAATGAAATCGTTCCAGTTTATGGCTTGTGATCACAGTTCTTGGATTGACGAGCTACCTCTGTTCTTCGTTTGTGTACTGTTCTGGATGCTTAAATCTATTTCTCTGGGGCTAAAAGAACTTTTTCCATTAAATCTTCTAGGACTTCTCACTGGAACAGGATACTGTGACTCCCATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTACTTTCCTCATTGTCTCTCTCTCTCTCTCTCTATGAATATTGCTATATTTTTTGCCATGAAATCTGACTGCTGCTTGATATGGCTGACTAAATTATCCAACACGTCTGACATTTGTTTATTTCAAGACTTGGGAGCTCGCATATATGACCTCTTTTTGTTGTCTCACTCGTCAGATCTTTACATATTTTAAGCATTTTTTTTATTAAGAAGAAGGTGATACACAAGGGATTATCAGAAATGACATGAGGCTTATGATTACTGTCATATGGGTGCTAATGGCTATCTGATTACTGTCATAATCCAAATTTTGAAAAGTCAAAAAATAGTTTATAAAAACTTGTTTTTGCTTTTATAATTTTGGCTAAGAATTCAAACTTTTTTTTTTTTTTTGAAGAAATGTGAAAACCATCCATAGTAAAGAAATTGCAAGGGAACAAACACAATTTTCAAAAACAGAAACCTAAAATTAAAATTGTTATTAAACGGGCCAAGTTTTTAGTAGTTTTGTTCTATAAAGCATTTGAGGACAATAATTTATTATCAATGTTGAGGCCGGCAATAGACCTTAACCTCGTGTCTCTATTGTCACTTGATAAAGCAATTTTATGAGACTTCGGATAAAGGGTTTTCTTCTTATTTTTGCACAATTTTCTCATTTATTTTGGAAGATCCATCTTTATACGCTGAAACATGGGCCAATATGTTCGAAGGTTTCCCAACTATTTGTGGTAGACCGATGCTGCATTATGGGCTTTGTTCTTTTTGAATCTGGCTGTATCTAAATGTTTCCTGTGGGAAAGATTGTGCCATGTGCATGGTTAACTACATTACATGCTTAATGCTGCGTTTATCTACTTGGCCTTCTAGAACAAAAGCAAATGTGTTACGTTAGTGTGAAGCTATGAGGAATAAGGATGTAGAATATATCCATTAATTTGTATTAATCTTCTAACTTCAACTTAGACTAGATGATATATTATTATACATTGACTTGTATAAACTTCGGCATGTCAATTGGTAGACCTGTTGACATGGGTTAACTCCACATCAATTTCATAACGCAGCTTCAGCACAAGGAACTGATAAGGTGGAACTTTCCTGATAATTTTGCAAGTAACCTTTGCGATCAACAAAGACACTTACTAATTTTAGGGGTGAACTATGTTGAAGGGATTGAATATTGAACCTGTCAAGTTGCTATATCTAGATGGTATGATATAAACAATTTATTGTGAAAGGCTATTTATGTATGTTATTTTATGCAATAACTCTATGAATTCCTATTATATGTTGAGTTAAAGCTTTCAAATAAATTCCTATAATCTAGTACTTAGCATGTTCGGGTTTTCCTTTTAACAGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATTTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGTTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGTTCATGGGTAACAGAGCTAGATAGAAGAGAAGAAAACCATGAAAATATAGAATTACTAAGTCAAAGATAGATGATGTCTGGTAGCAGAAGCAAGCTTACTTCTTAACAGCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAACGTTTTGGTCCCTAATTCTTTTGTTGGTTCAGAGGTTTCAGGAATGGAATTCAATCCTGGGAATGAGGTAAATGATGAGTTTTAGAAGTATTTTTGGTTGGTTTGGTTCATGCTCAAATGGCTGCTACATGTGCTTTCACCAATGAAGGATCATCCCCATTATCTGTACTTTAATTTCTTGATCGATTGACTGCTACCCTTCGACAGGTAGATGACTTGTTCAATGACTTATGTGTAAAGAAGAAAGGATAAGCAACTTTGGATGAGACTCTATTGCAAATGTGTAAGATTTTCTCTTCAGAAACGCCCAATGTTAAAGCATGATGGGGGTAATGCCTGTTGGTTAAATTACAAATGTCCCCTATGTTTAGATGAATATTTGAATTTAATCCCTATGATTTTAAAAGTTGTAATTTTGACATTATGATTTGATTAAATGTTAATGTCAACGG

mRNA sequence

ATGACTCTGCTAAACCCTAAAGATTACAATCCTTTGGCGCCGAGTTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCGACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTCGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGTTTTGAGAACTATTGTAATGGGATTGGCACCTATTGGATGTGCTCCTTACTACCTATGGCTATACGGTAGTGAAAATGGAGAGTGTATTGAAGAGATAAATGACATGGTTATGGAGTTTAAGGAGCTCGGCATGGAAGTGCCTGATTCAAATATTATCTTCTGTGTTTTGCTTCAAGGCTCACTGGATATTCTGAAGAACATGAATGTTACCGTGAATGACAATCTAACTTCCTTTCATTTCCTCCGCCATGAATCGAATTCGCGTCTCATTGTGTCATTTTGTTTTCATCTAGGTTTCAATGTAACTACTGATGCTTGTTGTGGGTTTGGTCGCTACAATGACAATGTGTGGAATGACCTCCATACAACAATGTACTATCCTAAGAACTTGAAGGAGAGACTGTCACAAGTTGTATTTGGTTGGCTTGATGATGAATCATACATGTTTGAGCGGCAACCACATTTACTTCACCGTCTTCAGGTTTTACTTGGAGGCAGGGCCGCAGAAGAGGTCACCTATGGACGAGACACATCAAATGCATCGTTTAGCTATCCTGCCAATGCGCCATGGCTCGCTCGTAAAATTTTAAGAATGTTAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGATTATTGGGGGTTTGGACCCCAGGGCTGAAGTAACTTCTTTGACCACGCCAATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCACAAGGACTTCTCACTGGAACAGGATACTGTGACTCCCATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATTTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGTTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGTTCATGGGTAACAGAGCTAGATAGAAGAGAAGAAAACCATGAAAATATAGAATTACTAAGTCAAAGATAGATGATGTCTGGTAGCAGAAGCAAGCTTACTTCTTAACAGCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAACGTTTTGGTCCCTAATTCTTTTGTTGGTTCAGAGGTTTCAGGAATGGAATTCAATCCTGGGAATGAGGTAAATGATGAGTTTTAGAAGTATTTTTGGTTGGTTTGGTTCATGCTCAAATGGCTGCTACATGTGCTTTCACCAATGAAGGATCATCCCCATTATCTGTACTTTAATTTCTTGATCGATTGACTGCTACCCTTCGACAGGTAGATGACTTGTTCAATGACTTATGTGTAAAGAAGAAAGGATAAGCAACTTTGGATGAGACTCTATTGCAAATGTGTAAGATTTTCTCTTCAGAAACGCCCAATGTTAAAGCATGATGGGGGTAATGCCTGTTGGTTAAATTACAAATGTCCCCTATGTTTAGATGAATATTTGAATTTAATCCCTATGATTTTAAAAGTTGTAATTTTGACATTATGATTTGATTAAATGTTAATGTCAACGG

Coding sequence (CDS)

ATGACTCTGCTAAACCCTAAAGATTACAATCCTTTGGCGCCGAGTTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCGACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTCGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGTTTTGAGAACTATTGTAATGGGATTGGCACCTATTGGATGTGCTCCTTACTACCTATGGCTATACGGTAGTGAAAATGGAGAGTGTATTGAAGAGATAAATGACATGGTTATGGAGTTTAAGGAGCTCGGCATGGAAGTGCCTGATTCAAATATTATCTTCTGTGTTTTGCTTCAAGGCTCACTGGATATTCTGAAGAACATGAATGTTACCGTGAATGACAATCTAACTTCCTTTCATTTCCTCCGCCATGAATCGAATTCGCGTCTCATTGTGTCATTTTGTTTTCATCTAGGTTTCAATGTAACTACTGATGCTTGTTGTGGGTTTGGTCGCTACAATGACAATGTGTGGAATGACCTCCATACAACAATGTACTATCCTAAGAACTTGAAGGAGAGACTGTCACAAGTTGTATTTGGTTGGCTTGATGATGAATCATACATGTTTGAGCGGCAACCACATTTACTTCACCGTCTTCAGGTTTTACTTGGAGGCAGGGCCGCAGAAGAGGTCACCTATGGACGAGACACATCAAATGCATCGTTTAGCTATCCTGCCAATGCGCCATGGCTCGCTCGTAAAATTTTAAGAATGTTAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCCTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGATTATTGGGGGTTTGGACCCCAGGGCTGAAGTAACTTCTTTGACCACGCCAATGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCACAAGGACTTCTCACTGGAACAGGATACTGTGACTCCCATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTATTTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGTTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGTTCATGGGTAA

Protein sequence

MTLLNPKDYNPLAPSSNGFTVPPNSSFPISPAAPPPSNSLVPAVFIIGDSTCECGTKNLLGTFARAHHLPYCRDFDWKVLRTIVMGLAPIGCAPYYLWLYGSENGECIEEINDMVMEFKELGMEVPDSNIIFCVLLQGSLDILKNMNVTVNDNLTSFHFLRHESNSRLIVSFCFHLGFNVTTDACCGFGRYNDNVWNDLHTTMYYPKNLKERLSQVVFGWLDDESYMFERQPHLLHRLQVLLGGRAAEEVTYGRDTSNASFSYPANAPWLARKILRMLAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDPRAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG

Homology

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BLAST of Cp4.1LG01g00510 vs. Swiss-Prot
Match: SKIP8_ARATH (F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.2e-91
Identity = 160/230 (69.57%), Postives = 188/230 (81.74%), Query Frame = 1


Query: 326 NGGVIIGGLDPRAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMT 385
           NGG    G   R  VT+ T    V + + G SMMEQLVPEITTHALSYLDYPSLCRLSMT
Sbjct: 8   NGGTPPMGGGERTTVTTST----VADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMT 67

Query: 386 NSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERS 445
           NSLMRKAANDDNAWKALYHKDF+LEQD +TP+NGWK YYA TR I+++N +F  IIR+R+
Sbjct: 68  NSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRA 127

Query: 446 LQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMA 505
           LQAM+  WLN+DYVKCIHASGE FSGYN VIQSWQ+ FNWEQG +FQV  VR R+LTDMA
Sbjct: 128 LQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMA 187

Query: 506 WVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVH 556
           WV+MK Y ++D GPF +TNV+E+HNGRW+MVHHHSSVMLI  + ++ +VH
Sbjct: 188 WVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVMLI--DDQQVVVH 231

[Close]

BLAST of Cp4.1LG01g00510 vs. Swiss-Prot
Match: FB335_ARATH (Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-34
Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 358 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPI 417
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++F+ E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 418 NGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHASGEFFSGY 473
           NGWKA++A T+ +M +N +F +I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]

BLAST of Cp4.1LG01g00510 vs. Swiss-Prot
Match: FTSI1_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana GN=FTSHI1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.7e-19
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 211 ERLSQVVFGWLDDESYMFERQPHLLHRLQVLLGGRAAEEVTYGRDTSNASFSYPANAPWL 270
           + LSQVVF  LDDESYMF R P LLHRLQVLLGGRAAEEV YG DTS AS  Y ++A WL
Sbjct: 732 QTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASVDYLSDASWL 791

Query: 271 ARKIL 276
           ARKIL
Sbjct: 792 ARKIL 796

[Close]

BLAST of Cp4.1LG01g00510 vs. TrEMBL
Match: A0A0A0KX34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052690 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 9.3e-145
Identity = 255/296 (86.15%), Postives = 271/296 (91.55%), Query Frame = 1


Query: 278 LAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDPR 337
           +AAIVTFLCFLLA+F AVRLVSVP+IRRTK LQSE +GTRNCNCTCSLNGGV+I GLDPR
Sbjct: 18  IAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCNCTCSLNGGVVIRGLDPR 77

Query: 338 AEVTSLTT-----------------PMVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 397
           AE+TS T+                 P+VVTERQTGASMMEQLVPEITTHALSYLDYPSLC
Sbjct: 78  AEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 137

Query: 398 RLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNI 457
           RLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+YYAATRTIMNINAQF NI
Sbjct: 138 RLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATRTIMNINAQFYNI 197

Query: 458 IRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARV 517
           IR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAFNWEQGINFQVRDVRARV
Sbjct: 198 IRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQGINFQVRDVRARV 257

Query: 518 LTDMAWVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           LTDMAWVSMKTY DMDTGPFNVTN+YE+HNGRWYMVHHHSSVMLIVGE+E+QMVHG
Sbjct: 258 LTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQQMVHG 313

[Close]

BLAST of Cp4.1LG01g00510 vs. TrEMBL
Match: V4TLL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021394mg PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 5.3e-108
Identity = 197/284 (69.37%), Postives = 227/284 (79.93%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDP 336
           ++AAI T    LLA+  A    S        +  S     ++CNCTCS NG       + 
Sbjct: 14  LIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAER 73

Query: 337 RA-EV---TSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA 396
              EV    +     VV ER +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA
Sbjct: 74  EMLEVGRHAATAAAAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA 133

Query: 397 ANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHF 456
           ANDDNAWKALYHKDF+LEQD+V P+NGWKAYYAATR ++N+NA+F NIIRERSL AMS F
Sbjct: 134 ANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRF 193

Query: 457 WLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTY 516
           WLNADYVKCIHASGE FSGYN+VIQSWQ+AFNWEQG++FQV+DVRARVLTD+AWV+MKTY
Sbjct: 194 WLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTY 253

Query: 517 FDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
            D+DTGPFN+TNV+E+HNGRWYMVHHHSSVML+ GEVE+Q+VHG
Sbjct: 254 IDIDTGPFNMTNVFEFHNGRWYMVHHHSSVMLVDGEVEQQVVHG 297

[Close]

BLAST of Cp4.1LG01g00510 vs. TrEMBL
Match: A0A067GAF3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022429mg PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.2e-107
Identity = 197/286 (68.88%), Postives = 228/286 (79.72%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDP 336
           ++AAI T    LLA+  A    S        +  S     ++CNCTCS NG       + 
Sbjct: 14  VIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAER 73

Query: 337 ------RAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 396
                 R   T+ T   VV ER +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR
Sbjct: 74  EMLEVGRHAATAATA--VVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 133

Query: 397 KAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMS 456
           KAANDDNAWKALYHKDF+LEQD+V P+NGWKAYYAATR ++N+NA+F NIIRERSL AMS
Sbjct: 134 KAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMS 193

Query: 457 HFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMK 516
            FWLNADYVKCIHASGE FSGYN+VIQSWQ+AFNWEQG++FQV+DVRARVLTD+AWV+MK
Sbjct: 194 RFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 253

Query: 517 TYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           TY D+DTGPFN+TNV+E+HNG+WYMVHHHSSVML+ GEVE+Q+VHG
Sbjct: 254 TYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297

[Close]

BLAST of Cp4.1LG01g00510 vs. TrEMBL
Match: B9RCV3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692400 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.0e-107
Identity = 203/287 (70.73%), Postives = 231/287 (80.49%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALF---AAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGV---- 336
           +LA+ +T L  LLA F   +   L S P    + A       T NC C+CS +  V    
Sbjct: 18  LLASSLTLLSLLLAFFTIRSKSSLKSPP--SDSPATSPAHKRTSNCCCSCSCHSAVPVCA 77

Query: 337 -IIGGLDPRAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL 396
            I GG D  A VT+ TT   V +RQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL
Sbjct: 78  HINGGGDMVAAVTT-TTEKGVVDRQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL 137

Query: 397 MRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQA 456
           MRKAANDDNAWKALYHKDF+LEQDTVTP+NGWKAYYA+TR I+N N +F N+I++RSLQA
Sbjct: 138 MRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAYYASTRAIVNANTEFFNVIKDRSLQA 197

Query: 457 MSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVS 516
           MS  WLNADYVKCIHASGE FSGYNAV+QSWQ+AFNWEQG+ FQVRDVRARVLTDMAWV+
Sbjct: 198 MSRIWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLEFQVRDVRARVLTDMAWVT 257

Query: 517 MKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVH 556
           MKTYFDMDTGPF VTN++E+HN RWYMVHHHSSVMLI G+V++Q+VH
Sbjct: 258 MKTYFDMDTGPFTVTNIFEFHNDRWYMVHHHSSVMLIDGDVDQQIVH 301

[Close]

BLAST of Cp4.1LG01g00510 vs. TrEMBL
Match: W9S3I3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003143 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.3e-106
Identity = 206/287 (71.78%), Postives = 227/287 (79.09%), Query Frame = 1


Query: 278 LAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRN---CNCTCSLN---GGVII 337
           +A + T LCF L LF+A  L   P     + LQS+G   R+   C+C C  N   GG   
Sbjct: 18  VAIVFTALCFFLVLFSARSLPLWP-----RLLQSDGGEKRSEKLCDCRCCCNGSVGGCSE 77

Query: 338 GGLDPRAEVTSLTTPM-VVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 397
           G   P    T +     V+ ERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR
Sbjct: 78  GETAPYLNGTEMAENWPVLRERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 137

Query: 398 KAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMS 457
           KAANDDNAWKALYHKDF+LEQD VTP+NGWKAYYAATR I+N+N +F NIIR+RSLQAMS
Sbjct: 138 KAANDDNAWKALYHKDFTLEQDNVTPVNGWKAYYAATRAIVNVNNEFFNIIRDRSLQAMS 197

Query: 458 HFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMK 517
            FWLNADYVKC+HASG  FSGYNAVI SWQ AFNWEQGINFQVRDVRARVLTDMAWVSMK
Sbjct: 198 RFWLNADYVKCVHASGNLFSGYNAVIHSWQFAFNWEQGINFQVRDVRARVLTDMAWVSMK 257

Query: 518 TYF-DMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           TY  D+D GPFNVTNV+E+HNGRWYMVHHHSSVM   GEVE+Q+VHG
Sbjct: 258 TYVDDVDIGPFNVTNVFEFHNGRWYMVHHHSSVM--DGEVEQQIVHG 297

[Close]

BLAST of Cp4.1LG01g00510 vs. TAIR10
Match: AT4G10925.1 (AT4G10925.1 Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-92
Identity = 160/230 (69.57%), Postives = 188/230 (81.74%), Query Frame = 1


Query: 326 NGGVIIGGLDPRAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMT 385
           NGG    G   R  VT+ T    V + + G SMMEQLVPEITTHALSYLDYPSLCRLSMT
Sbjct: 8   NGGTPPMGGGERTTVTTST----VADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMT 67

Query: 386 NSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERS 445
           NSLMRKAANDDNAWKALYHKDF+LEQD +TP+NGWK YYA TR I+++N +F  IIR+R+
Sbjct: 68  NSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRA 127

Query: 446 LQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMA 505
           LQAM+  WLN+DYVKCIHASGE FSGYN VIQSWQ+ FNWEQG +FQV  VR R+LTDMA
Sbjct: 128 LQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMA 187

Query: 506 WVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVH 556
           WV+MK Y ++D GPF +TNV+E+HNGRW+MVHHHSSVMLI  + ++ +VH
Sbjct: 188 WVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVMLI--DDQQVVVH 231

[Close]

BLAST of Cp4.1LG01g00510 vs. TAIR10
Match: AT4G23960.1 (AT4G23960.1 F-box family protein)

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-35
Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 358 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPI 417
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++F+ E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 418 NGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHASGEFFSGY 473
           NGWKA++A T+ +M +N +F +I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]

BLAST of Cp4.1LG01g00510 vs. TAIR10
Match: AT4G10950.1 (AT4G10950.1 SGNH hydrolase-type esterase superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-25
Identity = 66/182 (36.26%), Postives = 84/182 (46.15%), Query Frame = 1


Query: 75  FDWKVLRTIVMGLAPIGCAPYYLWLYGSENGECIEEINDMVME--------FKELGMEVP 134
           ++ KV R +VMGL PIGCAPYY+W Y S+NGEC EE+N M+ME          +L  E+P
Sbjct: 244 YNVKVRRMVVMGLPPIGCAPYYMWKYRSQNGECAEEVNSMIMESNFVMRYTVDKLNRELP 303

Query: 135 DSNIIFCVLLQGSLDILKNMNVTVNDNLTSFHFLRHESNSRLIVSFCFHLGFNVTTDACC 194
            ++II+C + Q ++DIL+N                H+           H GFN TTDACC
Sbjct: 304 GASIIYCDVFQSAMDILRN----------------HQ-----------HYGFNETTDACC 363

Query: 195 GFGRYN-----------------------------------DNVWNDLHTTMYYPKNLKE 214
           G GRY                                    DNVWN  H  M YP NL+ 
Sbjct: 364 GLGRYKGWLPCISPEMACSDASGHLWWDQFHPTDAVNAILADNVWNGRHVDMCYPTNLET 398

[Close]

BLAST of Cp4.1LG01g00510 vs. TAIR10
Match: AT4G23940.1 (AT4G23940.1 FtsH extracellular protease family)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-20
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 211 ERLSQVVFGWLDDESYMFERQPHLLHRLQVLLGGRAAEEVTYGRDTSNASFSYPANAPWL 270
           + LSQVVF  LDDESYMF R P LLHRLQVLLGGRAAEEV YG DTS AS  Y ++A WL
Sbjct: 732 QTLSQVVFHRLDDESYMFGRLPQLLHRLQVLLGGRAAEEVIYGSDTSKASVDYLSDASWL 791

Query: 271 ARKIL 276
           ARKIL
Sbjct: 792 ARKIL 796

[Close]

BLAST of Cp4.1LG01g00510 vs. NCBI nr
Match: gi|449462569|ref|XP_004149013.1| (PREDICTED: F-box protein SKIP8 [Cucumis sativus])

HSP 1 Score: 521.9 bits (1343), Expect = 1.3e-144
Identity = 255/296 (86.15%), Postives = 271/296 (91.55%), Query Frame = 1


Query: 278 LAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDPR 337
           +AAIVTFLCFLLA+F AVRLVSVP+IRRTK LQSE +GTRNCNCTCSLNGGV+I GLDPR
Sbjct: 18  IAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCNCTCSLNGGVVIRGLDPR 77

Query: 338 AEVTSLTT-----------------PMVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 397
           AE+TS T+                 P+VVTERQTGASMMEQLVPEITTHALSYLDYPSLC
Sbjct: 78  AEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 137

Query: 398 RLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNI 457
           RLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+YYAATRTIMNINAQF NI
Sbjct: 138 RLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATRTIMNINAQFYNI 197

Query: 458 IRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARV 517
           IR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAFNWEQGINFQVRDVRARV
Sbjct: 198 IRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQGINFQVRDVRARV 257

Query: 518 LTDMAWVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           LTDMAWVSMKTY DMDTGPFNVTN+YE+HNGRWYMVHHHSSVMLIVGE+E+QMVHG
Sbjct: 258 LTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQQMVHG 313

[Close]

BLAST of Cp4.1LG01g00510 vs. NCBI nr
Match: gi|659102060|ref|XP_008451931.1| (PREDICTED: F-box protein SKIP8 [Cucumis melo])

HSP 1 Score: 520.4 bits (1339), Expect = 3.9e-144
Identity = 254/296 (85.81%), Postives = 272/296 (91.89%), Query Frame = 1


Query: 278 LAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDPR 337
           +AAI+TFLCFLLA+F AVRLVSVP+IRRTK+LQSE +GTRNCNCTCSLNGGV+I GLDPR
Sbjct: 18  IAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCNCTCSLNGGVVIRGLDPR 77

Query: 338 AEVTSLTT-----------------PMVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 397
           AE+TS T+                 P+VVTERQTGASMMEQLVPEITTHALSYLDYPSLC
Sbjct: 78  AEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLC 137

Query: 398 RLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNI 457
           RLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+YYAATRTIMNINAQF NI
Sbjct: 138 RLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATRTIMNINAQFYNI 197

Query: 458 IRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARV 517
           IR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARV
Sbjct: 198 IRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARV 257

Query: 518 LTDMAWVSMKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           LTDMAWVSMKTY DMDTGPFNVTN+YE+H+GRWYMVHHHSSVMLIVGE+E+QMVHG
Sbjct: 258 LTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVMLIVGEMEQQMVHG 313

[Close]

BLAST of Cp4.1LG01g00510 vs. NCBI nr
Match: gi|567893654|ref|XP_006439315.1| (hypothetical protein CICLE_v10021394mg [Citrus clementina])

HSP 1 Score: 399.8 bits (1026), Expect = 7.7e-108
Identity = 197/284 (69.37%), Postives = 227/284 (79.93%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDP 336
           ++AAI T    LLA+  A    S        +  S     ++CNCTCS NG       + 
Sbjct: 14  LIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAER 73

Query: 337 RA-EV---TSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA 396
              EV    +     VV ER +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA
Sbjct: 74  EMLEVGRHAATAAAAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKA 133

Query: 397 ANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHF 456
           ANDDNAWKALYHKDF+LEQD+V P+NGWKAYYAATR ++N+NA+F NIIRERSL AMS F
Sbjct: 134 ANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRF 193

Query: 457 WLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTY 516
           WLNADYVKCIHASGE FSGYN+VIQSWQ+AFNWEQG++FQV+DVRARVLTD+AWV+MKTY
Sbjct: 194 WLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTY 253

Query: 517 FDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
            D+DTGPFN+TNV+E+HNGRWYMVHHHSSVML+ GEVE+Q+VHG
Sbjct: 254 IDIDTGPFNMTNVFEFHNGRWYMVHHHSSVMLVDGEVEQQVVHG 297

[Close]

BLAST of Cp4.1LG01g00510 vs. NCBI nr
Match: gi|568844982|ref|XP_006476359.1| (PREDICTED: F-box protein SKIP8 [Citrus sinensis])

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 197/286 (68.88%), Postives = 228/286 (79.72%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGVIIGGLDP 336
           ++AAI T    LLA+  A    S        +  S     ++CNCTCS NG       + 
Sbjct: 14  VIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAER 73

Query: 337 ------RAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 396
                 R   T+ T   VV ER +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR
Sbjct: 74  EMLEVGRHAATAATA--VVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR 133

Query: 397 KAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMS 456
           KAANDDNAWKALYHKDF+LEQD+V P+NGWKAYYAATR ++N+NA+F NIIRERSL AMS
Sbjct: 134 KAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMS 193

Query: 457 HFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMK 516
            FWLNADYVKCIHASGE FSGYN+VIQSWQ+AFNWEQG++FQV+DVRARVLTD+AWV+MK
Sbjct: 194 RFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK 253

Query: 517 TYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVHG 557
           TY D+DTGPFN+TNV+E+HNG+WYMVHHHSSVML+ GEVE+Q+VHG
Sbjct: 254 TYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297

[Close]

BLAST of Cp4.1LG01g00510 vs. NCBI nr
Match: gi|255537841|ref|XP_002509987.1| (PREDICTED: F-box protein SKIP8 [Ricinus communis])

HSP 1 Score: 397.9 bits (1021), Expect = 2.9e-107
Identity = 203/287 (70.73%), Postives = 231/287 (80.49%), Query Frame = 1


Query: 277 MLAAIVTFLCFLLALF---AAVRLVSVPFIRRTKALQSEGLGTRNCNCTCSLNGGV---- 336
           +LA+ +T L  LLA F   +   L S P    + A       T NC C+CS +  V    
Sbjct: 18  LLASSLTLLSLLLAFFTIRSKSSLKSPP--SDSPATSPAHKRTSNCCCSCSCHSAVPVCA 77

Query: 337 -IIGGLDPRAEVTSLTTPMVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL 396
            I GG D  A VT+ TT   V +RQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL
Sbjct: 78  HINGGGDMVAAVTT-TTEKGVVDRQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSL 137

Query: 397 MRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQA 456
           MRKAANDDNAWKALYHKDF+LEQDTVTP+NGWKAYYA+TR I+N N +F N+I++RSLQA
Sbjct: 138 MRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAYYASTRAIVNANTEFFNVIKDRSLQA 197

Query: 457 MSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVS 516
           MS  WLNADYVKCIHASGE FSGYNAV+QSWQ+AFNWEQG+ FQVRDVRARVLTDMAWV+
Sbjct: 198 MSRIWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLEFQVRDVRARVLTDMAWVT 257

Query: 517 MKTYFDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMVH 556
           MKTYFDMDTGPF VTN++E+HN RWYMVHHHSSVMLI G+V++Q+VH
Sbjct: 258 MKTYFDMDTGPFTVTNIFEFHNDRWYMVHHHSSVMLIDGDVDQQIVH 301

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKIP8_ARATH	2.2e-91	69.57	F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1	[more]
FB335_ARATH	5.6e-34	56.52	Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=3 SV=1	[more]
FTSI1_ARATH	6.7e-19	75.38	Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=A...	[more]

BLAST of Cp4.1LG01g00510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX34_CUCSA	9.3e-145	86.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052690 PE=4 SV=1	[more]
V4TLL3_9ROSI	5.3e-108	69.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021394mg PE=4 SV=1	[more]
A0A067GAF3_CITSI	1.2e-107	68.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022429mg PE=4 SV=1	[more]
B9RCV3_RICCO	2.0e-107	70.73	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692400 PE=4 SV=1	[more]
W9S3I3_9ROSA	1.3e-106	71.78	Uncharacterized protein OS=Morus notabilis GN=L484_003143 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00510 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10925.1	1.3e-92	69.57	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G23960.1	3.2e-35	56.52	F-box family protein	[more]
AT4G10950.1	1.7e-25	36.26	SGNH hydrolase-type esterase superfamily protein	[more]
AT4G23940.1	3.7e-20	75.38	FtsH extracellular protease family	[more]

BLAST of Cp4.1LG01g00510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462569\|ref\|XP_004149013.1\|	1.3e-144	86.15	PREDICTED: F-box protein SKIP8 [Cucumis sativus]	[more]
gi\|659102060\|ref\|XP_008451931.1\|	3.9e-144	85.81	PREDICTED: F-box protein SKIP8 [Cucumis melo]	[more]
gi\|567893654\|ref\|XP_006439315.1\|	7.7e-108	69.37	hypothetical protein CICLE_v10021394mg [Citrus clementina]	[more]
gi\|568844982\|ref\|XP_006476359.1\|	1.7e-107	68.88	PREDICTED: F-box protein SKIP8 [Citrus sinensis]	[more]
gi\|255537841\|ref\|XP_002509987.1\|	2.9e-107	70.73	PREDICTED: F-box protein SKIP8 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009959	Polyketide cyclase SnoaL-like domain
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00510.1	Cp4.1LG01g00510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 356..402 score: 8
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 355..429 score: 1.44
IPR009959	Polyketide cyclase SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 430..543 score: 1.2
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 359..425 score: 2.1
None	No IPR available	PANTHER	PTHR15537	FAMILY NOT NAMED	coord: 277..556 score: 4.3E
None	No IPR available	PANTHER	PTHR15537:SF4	SUBFAMILY NOT NAMED	coord: 277..556 score: 4.3E
None	No IPR available	unknown	SSF140990	FtsH protease domain-like	coord: 221..275 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00510	Cucsa.114900	Cucumber (Gy14) v1	cgycpeB0269
Cp4.1LG01g00510	CmaCh16G005380	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00510	CmaCh04G006780	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00510	CmoCh04G007240	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00510	CmoCh16G005900	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00510	Cla012814	Watermelon (97103) v1	cpewmB422
Cp4.1LG01g00510	Csa4G052660	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00510	MELO3C016277	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00510	ClCG07G011500	Watermelon (Charleston Gray)	cpewcgB408
Cp4.1LG01g00510	CSPI04G06470	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00510	Lsi07G007280	Bottle gourd (USVL1VR-Ls)	cpelsiB378
Cp4.1LG01g00510	MELO3C032591.2	Melon (DHL92) v3.6.1	cpemedB499
Cp4.1LG01g00510	MELO3C016277.2	Melon (DHL92) v3.6.1	cpemedB486
Cp4.1LG01g00510	CsaV3_4G006690	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00510	Bhi01G002308	Wax gourd	cpewgoB0518
Cp4.1LG01g00510	CsGy4G006400	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00510	Carg13078	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00510	Cp4.1LG14g02700	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00510	Cucurbita pepo (Zucchini)	cpecpeB206
Cp4.1LG01g00510	Cucurbita maxima (Rimu)	cmacpeB324
Cp4.1LG01g00510	Cucurbita moschata (Rifu)	cmocpeB287
Cp4.1LG01g00510	Wild cucumber (PI 183967)	cpecpiB431
Cp4.1LG01g00510	Cucumber (Chinese Long) v2	cpecuB432
Cp4.1LG01g00510	Melon (DHL92) v3.5.1	cpemeB362
Cp4.1LG01g00510	Cucumber (Chinese Long) v3	cpecucB0538