CsaV3_4G006720 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G006720
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	F-box protein SKIP8
Location	chr4 : 4515404 .. 4518591 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGTCATTGTTAATATAAGAAGAAGGAAACAAAATCGACATTTAAAAAAAATCTACCATATGACGGGTAAAAAATTAATATTTTTGCAAATATTATTCTATTGTGATATAGATAATATTTGTTTTACAATGTGTGCTCTATGTTGCAATTTTCCAATTTCCAATTAATAAAAATGCATTTTTACAAAAGAAAAAACGAGTTAAAATTACGAAATTACCCTCCACGAAAAACAAACTGACTGACAGAGAAGTTTCACACGTTGGGAATTTTCCTCCTTTTCGTCGTCTGTTACGATACCATTTCACGGGTCACCCAAAACCTCCACCTCCTTCTTCCGCCCTTCCGATACCGAAGAAATTCCGGCTCCGTCACCAGAGATCATTTCCCCCACCGTCATCTCCCTCGCCTGCCAACGCATTTCATCTTCCTAACTCCACAGTTGACCATATTTTCCATACTTCGCCTTCTCTCGGCGACGGCGCGTTTTCACACCTTCCGCTGAAACCCGACGCGACAAATTTTCTTAGGGTTTCATGTTTTGTACGGTTGAACGTTATACAGACGCTTTCATGTCGTTTGAATGGAGATTGTTTCTTCTGCCACCATTGCCTTGTCGTCCCAACCCTTTCCTATAGCTGCGATTGTTACTTTTCTTTGTTTTCTTCTTGCTATTTTCGTTGCCGTTCGATTGGTTTCTGTTCCTTACATTAGAAGGACGAAAACTCTACAATCGGAGAGCGTGGGTACGAGGAATTGTAATTGTACTTGTTCGCTTAACGGTGGTGTGGTTATTAGGGGTTTGGACCCCAGGGCTGAGATTACTTCTTCGACTAGTACGAGTATGCCTTATTTGAACGGTCGTGCAGTGGAAGTATTGGAGAAGGCGCCGGTAGTTGTTACGGAGCGGCAGACGGGCGCTTCGATGATGGAGCAGTTAGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTATGCCGTCTGTCCATGACTAATTCTTTGATGCGCAAAGCCGCAAATGATGATAATGCCTGGAAGGCGCTTTATCATAAGGTACAGATTAGGTTTGATCTTCTTTTGTACGGTTTTCGTTGGCTAATTTATCTTTCTTCTTGAATATGAGTGCCGGGGAAGAAACACGAAAGGGAAGATAGAATCTCTGTTCTTGGGAATATTGTTATGAAACTTTCCTGTCCTTATCTCGTGTACATTTACTCAACGTCTTTTTGTAATTCTTGAAGGGAACGAATTGACTGTATTAACTTTTATATTTCAAGTAATGGGATCGTTTCAATTGATGGGTTGTGGCCGAAGATTGCAAGAACTATCTCTATGCTTTCCTTGTTGTATTGTTGTTGATGTTTAAATCTATTTAGGATTCTCTGGGGCTAAAACAACCTTTCCATGAAATCTTTTAGGACTTCACACTGGAACAGGATACTGTAACTCCAATTAATGGGTGGAAGTCTTATTATGCTGCAACAAGAACAATTATGAATATCAATGCCCAATTCTATAACATCATCAGAGACAGGTCTCTTCAAGCGATGAGTCGTTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCATGCTTCAGGAGAATTCTTTTCCGGGTATTTACCTTATTGTCTTATTTTTAGCATGATATCAGATTGCTGCTTCTTAAGGCTAACTAAATTAGCAAACATGGTCAACATTTGCTTCTATAGACTTGTGATTCTGTGAAGTTGCATATATTGCTCTCTTTTCTTTTTTGTCTTCTTATATGATCTTTAATTTTCTAAGCATTTTTACTGAGAAGGTGATATACAAGGGATAGTTAGAAATGACTCTAGGCTTATGATTACTGTCATATGCGTGTTTTGGATTACCTGAATTTCATGAATTTAAGTTTTTCTTTATATAAGAACATTTGTCCAGAATTACTTTTTTACTATGTTGGACCGGCAATTGACCTTGACCTTGTCTCTCTACTCTTTAGTATCACTTGAATGTGGCTGTATCCTAATGTTTCTTGATGGGGAAGAATTTTGACCATGCCTATGGGCATGGGTAACTAGATTATGTGATTCAGATACTGAAGAATGTTTCTTGTAATCCACTTCAGCCTTATCGAGTTCAATTTCTGATAATTTTGCAAATAACCTTTGCGATGAACAATGACACTTTTGATAGTTCTTGGTTGAACTATATTGAAGGGATTGAATCTTGAGCTTGTCAAGTTGCCGATATCTAGATGTTTACACTATTTATGCATGTTATGTGATGCAACAACTCTTTGAATTCCTGTTATATGTTGAATTAAGGCTTTCAAATAAATTCACATATAATCCGGTACTTACTATGTTTTGGGATTTCTTTCTACAGGTATAATGCCGTAGTTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGTGACGTACGGGCTCGTGTGCTTACCGATATGGCTTGGGTTAGCATGAAAACCTATGTTGACATGGATACAGGGCCATTCAACGTAACCAACATTTACGAGTTTCATAATGGTCGATGGTACATGGTGCATCATCACAGCTCTGTAATGCTTATTGTTGGGGAGATGGAACAACAAATGGTTCATGGCTAACAGATTGAAGATAGAAGAGAAAGTAAAGCATGGAAAAAATATACAATACTAGGTGGTACAAAGATAGGGTGGTGTTTGGTAGAAGAAGCAAGATTTAAAGGAAAAAGAAAAAAAAGTCTTGTCCATTACTTTTAATCAACACCATTTTAACTGTTCCAACCTCAGTTTTGCTTGATCTGTGTTGATTGATCCCTTTTTTTCTTTCGAAGTATTTTTTTTTTCATCCATAGTTTGATTCCATGCTGAAGGCTGAAATGGCTGTGCATGTGTTTCCAGCAATGAAGGAGTAGTCATTAACAAAAATTACCAAATGTTTGTACTTCATTTTTCTTAAATCTTGCTATTGAGATGCTCAATTAACTCCATGACAGGTACCCGACTTGTTCAGTAAGTCTGTATAAAAGGAAGGATAAGAAAAAAGAACGCTGTAACAATTTTAATGTAAATGTGTAAGCTTTCTTGTTTTGGAACTCCATTGTTGGAGCAATTGTAAATACATCTTTGTTGGTGAAGGTTTAATATCATATGAGTTTTTTTTAACTCAAA

mRNA sequence

ATGGAGATTGTTTCTTCTGCCACCATTGCCTTGTCGTCCCAACCCTTTCCTATAGCTGCGATTGTTACTTTTCTTTGTTTTCTTCTTGCTATTTTCGTTGCCGTTCGATTGGTTTCTGTTCCTTACATTAGAAGGACGAAAACTCTACAATCGGAGAGCGTGGGTACGAGGAATTGTAATTGTACTTGTTCGCTTAACGGTGGTGTGGTTATTAGGGGTTTGGACCCCAGGGCTGAGATTACTTCTTCGACTAGTACGAGTATGCCTTATTTGAACGGTCGTGCAGTGGAAGTATTGGAGAAGGCGCCGGTAGTTGTTACGGAGCGGCAGACGGGCGCTTCGATGATGGAGCAGTTAGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTATGCCGTCTGTCCATGACTAATTCTTTGATGCGCAAAGCCGCAAATGATGATAATGCCTGGAAGGCGCTTTATCATAAGGACTTCACACTGGAACAGGATACTGTAACTCCAATTAATGGGTGGAAGTCTTATTATGCTGCAACAAGAACAATTATGAATATCAATGCCCAATTCTATAACATCATCAGAGACAGGTCTCTTCAAGCGATGAGTCGTTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCATGCTTCAGGAGAATTCTTTTCCGGGTATAATGCCGTAGTTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGTGACGTACGGGCTCGTGTGCTTACCGATATGGCTTGGGTTAGCATGAAAACCTATGTTGACATGGATACAGGGCCATTCAACGTAACCAACATTTACGAGTTTCATAATGGTCGATGGTACATGGTGCATCATCACAGCTCTGTAATGCTTATTGTTGGGGAGATGGAACAACAAATGGTTCATGGCTAA

Coding sequence (CDS)

ATGGAGATTGTTTCTTCTGCCACCATTGCCTTGTCGTCCCAACCCTTTCCTATAGCTGCGATTGTTACTTTTCTTTGTTTTCTTCTTGCTATTTTCGTTGCCGTTCGATTGGTTTCTGTTCCTTACATTAGAAGGACGAAAACTCTACAATCGGAGAGCGTGGGTACGAGGAATTGTAATTGTACTTGTTCGCTTAACGGTGGTGTGGTTATTAGGGGTTTGGACCCCAGGGCTGAGATTACTTCTTCGACTAGTACGAGTATGCCTTATTTGAACGGTCGTGCAGTGGAAGTATTGGAGAAGGCGCCGGTAGTTGTTACGGAGCGGCAGACGGGCGCTTCGATGATGGAGCAGTTAGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTATGCCGTCTGTCCATGACTAATTCTTTGATGCGCAAAGCCGCAAATGATGATAATGCCTGGAAGGCGCTTTATCATAAGGACTTCACACTGGAACAGGATACTGTAACTCCAATTAATGGGTGGAAGTCTTATTATGCTGCAACAAGAACAATTATGAATATCAATGCCCAATTCTATAACATCATCAGAGACAGGTCTCTTCAAGCGATGAGTCGTTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCATGCTTCAGGAGAATTCTTTTCCGGGTATAATGCCGTAGTTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGTGACGTACGGGCTCGTGTGCTTACCGATATGGCTTGGGTTAGCATGAAAACCTATGTTGACATGGATACAGGGCCATTCAACGTAACCAACATTTACGAGTTTCATAATGGTCGATGGTACATGGTGCATCATCACAGCTCTGTAATGCTTATTGTTGGGGAGATGGAACAACAAATGGTTCATGGCTAA

Protein sequence

MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCNCTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQQMVHG

Homology

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BLAST of CsaV3_4G006720 vs. NCBI nr
Match: XP_004149013.1 (PREDICTED: F-box protein SKIP8 [Cucumis sativus] >KGN53419.1 hypothetical protein Csa_4G052690 [Cucumis sativus])

HSP 1 Score: 628.2 bits (1619), Expect = 1.5e-176
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

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BLAST of CsaV3_4G006720 vs. NCBI nr
Match: XP_008451931.1 (PREDICTED: F-box protein SKIP8 [Cucumis melo])

HSP 1 Score: 624.0 bits (1608), Expect = 2.7e-175
Identity = 309/313 (98.72%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEIVSSATIALSSQPFPIAAI+TFLCFLLAIFVAVRLVSVPYIRRTK+LQSESVGTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

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BLAST of CsaV3_4G006720 vs. NCBI nr
Match: XP_022931549.1 (F-box protein SKIP8-like [Cucurbita moschata] >XP_023553511.1 F-box protein SKIP8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 600.1 bits (1546), Expect = 4.2e-168
Identity = 297/313 (94.89%), Postives = 304/313 (97.12%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEI S+ATIAL SQPFPIAAIVTFLCFLLA+F AVRLVSVPYIRRTKT+Q E VGTRN N
Sbjct: 1   MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTKTVQLEGVGTRNFN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGV I GL+PRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDD+AWKALYHKDFTLEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKDFTLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of CsaV3_4G006720 vs. NCBI nr
Match: XP_022985415.1 (F-box protein SKIP8 [Cucurbita maxima])

HSP 1 Score: 595.9 bits (1535), Expect = 8.0e-167
Identity = 295/313 (94.25%), Postives = 302/313 (96.49%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEI S+ATIAL SQPFPIAAIVTFLCFLLA+F AVRLVSVPYIRRT T+Q E VGTRN N
Sbjct: 1   MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTTTVQLEGVGTRNFN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGV I GL+PRAEITSSTSTSMPYLNG AVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGHAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDD+AWKALYHKDFTLEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKDFTLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of CsaV3_4G006720 vs. NCBI nr
Match: XP_022942140.1 (F-box protein SKIP8-like [Cucurbita moschata])

HSP 1 Score: 587.4 bits (1513), Expect = 2.8e-164
Identity = 285/313 (91.05%), Postives = 300/313 (95.85%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEI S+ T+AL SQPFPIAAIVTFLCFLLA+F AVRLVSVP+IRRTK LQSE VGTRNCN
Sbjct: 1   MEIASAVTVALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGVGTRNCN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGVVI GLDPRAE+TSST T+MPYLNGR VEVLEK P+VVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIGGLDPRAEVTSSTRTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTPINGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQF NIIR+RSLQAMS FWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTN+YE+HNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGE+E+QM HG
Sbjct: 301 LIVGEVEEQMAHG 313

[Close]

BLAST of CsaV3_4G006720 vs. TAIR10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 327.0 bits (837), Expect = 1.3e-89
Identity = 152/229 (66.38%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 66  NGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITT 125
           NGG    G   R  +T+ST                     V + + G SMMEQLVPEITT
Sbjct: 8   NGGTPPMGGGERTTVTTST---------------------VADDKPGVSMMEQLVPEITT 67

Query: 126 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATR 185
           HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +TP+NGWK YYA TR
Sbjct: 68  HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTR 127

Query: 186 TIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQG 245
            I+++N +F+ IIRDR+LQAM+R WLN+DYVKCIHASGE FSGYN V+QSWQ+ FNWEQG
Sbjct: 128 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQG 187

Query: 246 INFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVH 295
            +FQV  VR R+LTDMAWV+MK Y+++D GPF +TN++EFHNGRW+MVH
Sbjct: 188 FDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVH 215

[Close]

BLAST of CsaV3_4G006720 vs. TAIR10
Match: AT4G23960.1 (F-box family protein)

HSP 1 Score: 149.1 bits (375), Expect = 4.7e-36
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 115 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPI 174
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 175 NGWKSYYAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGY 230
           NGWK+++A T+ +M +N +F++I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]

BLAST of CsaV3_4G006720 vs. Swiss-Prot
Match: sp|Q93YV9|SKIP8_ARATH (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.3e-88
Identity = 152/229 (66.38%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 66  NGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLVPEITT 125
           NGG    G   R  +T+ST                     V + + G SMMEQLVPEITT
Sbjct: 8   NGGTPPMGGGERTTVTTST---------------------VADDKPGVSMMEQLVPEITT 67

Query: 126 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATR 185
           HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +TP+NGWK YYA TR
Sbjct: 68  HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTR 127

Query: 186 TIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQG 245
            I+++N +F+ IIRDR+LQAM+R WLN+DYVKCIHASGE FSGYN V+QSWQ+ FNWEQG
Sbjct: 128 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQG 187

Query: 246 INFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVH 295
            +FQV  VR R+LTDMAWV+MK Y+++D GPF +TN++EFHNGRW+MVH
Sbjct: 188 FDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVH 215

[Close]

BLAST of CsaV3_4G006720 vs. Swiss-Prot
Match: sp|Q9T0B0|FB335_ARATH (Probable F-box protein At4g23960 OS=Arabidopsis thaliana OX=3702 GN=At4g23960 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.5e-35
Identity = 65/115 (56.52%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 115 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPI 174
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +  TP+
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 175 NGWKSYYAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGY 230
           NGWK+++A T+ +M +N +F++I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]

BLAST of CsaV3_4G006720 vs. TrEMBL
Match: tr|A0A0A0KX34|A0A0A0KX34_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052690 PE=4 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 9.6e-177
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of CsaV3_4G006720 vs. TrEMBL
Match: tr|A0A1S3BTF9|A0A1S3BTF9_CUCME (F-box protein SKIP8 OS=Cucumis melo OX=3656 GN=LOC103493084 PE=4 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 1.8e-175
Identity = 309/313 (98.72%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60
           MEIVSSATIALSSQPFPIAAI+TFLCFLLAIFVAVRLVSVPYIRRTK+LQSESVGTRNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120
           CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240
           YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAV+QSWQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300
           NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 LIVGEMEQQMVHG 314
           LIVGEMEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of CsaV3_4G006720 vs. TrEMBL
Match: tr|A0A2P5D702|A0A2P5D702_9ROSA (F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_260390 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.0e-114
Identity = 218/327 (66.67%), Postives = 251/327 (76.76%), Query Frame = 0


Query: 1   MEIVSSATIAL--SSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTR- 60
           MEI SS + AL  SSQPF +A   T LCF+LA    VR  S+P   R + LQS+    R 
Sbjct: 1   MEIASSFSSALSSSSQPFFVAVFFTALCFVLAALFTVR--SLP---RRRHLQSDGGEDRL 60

Query: 61  ------NCNCTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNG-----RAVEVLEKAPVVV 120
                 NC C CS      + G         S S + PYLNG        E+LE    V+
Sbjct: 61  KRKKLCNCACCCSTGSNGTLGG---------SESETAPYLNGGCGGSGGTEMLENGGAVL 120

Query: 121 TERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL 180
            ERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL
Sbjct: 121 IERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL 180

Query: 181 EQDTVTPINGWKSYYAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFF 240
           EQD++ P+NGWK+YYAATR I+N+N++F+NIIR+RSL AM RFWLNADYVKC+HASGE F
Sbjct: 181 EQDSIMPVNGWKAYYAATRAIVNMNSEFFNIIRERSLPAMRRFWLNADYVKCVHASGELF 240

Query: 241 SGYNAVVQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFH 300
           SGYN V+QSWQ AFNW+QG+NFQ+RDVRARVLT+MAWV+MKTYVDMDTGPFNVTN++EFH
Sbjct: 241 SGYNPVIQSWQFAFNWDQGVNFQIRDVRARVLTEMAWVTMKTYVDMDTGPFNVTNVFEFH 300

Query: 301 NGRWYMVHHHSSVMLIVGEMEQQMVHG 314
           NGRWYMVHHHSSVM +  E+EQQ++HG
Sbjct: 301 NGRWYMVHHHSSVMEV--ELEQQILHG 311

[Close]

BLAST of CsaV3_4G006720 vs. TrEMBL
Match: tr|W9S3I3|W9S3I3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003143 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 2.6e-113
Identity = 221/317 (69.72%), Postives = 245/317 (77.29%), Query Frame = 0


Query: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRN-- 60
           MEI  S + ALSSQ   +A + T LCF L +F A  L   P     + LQS+    R+  
Sbjct: 1   MEIFPSLSTALSSQSLFVAIVFTALCFFLVLFSARSLPLWP-----RLLQSDGGEKRSEK 60

Query: 61  -CNCTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMME 120
            C+C C  NG V             S   + PYLNG   E+ E  P V+ ERQTGASMME
Sbjct: 61  LCDCRCCCNGSVG----------GCSEGETAPYLNG--TEMAENWP-VLRERQTGASMME 120

Query: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGW 180
           QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD VTP+NGW
Sbjct: 121 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDNVTPVNGW 180

Query: 181 KSYYAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQ 240
           K+YYAATR I+N+N +F+NIIRDRSLQAMSRFWLNADYVKC+HASG  FSGYNAV+ SWQ
Sbjct: 181 KAYYAATRAIVNVNNEFFNIIRDRSLQAMSRFWLNADYVKCVHASGNLFSGYNAVIHSWQ 240

Query: 241 VAFNWEQGINFQVRDVRARVLTDMAWVSMKTYV-DMDTGPFNVTNIYEFHNGRWYMVHHH 300
            AFNWEQGINFQVRDVRARVLTDMAWVSMKTYV D+D GPFNVTN++EFHNGRWYMVHHH
Sbjct: 241 FAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDDVDIGPFNVTNVFEFHNGRWYMVHHH 297

Query: 301 SSVMLIVGEMEQQMVHG 314
           SSVM   GE+EQQ+VHG
Sbjct: 301 SSVM--DGEVEQQIVHG 297

[Close]

BLAST of CsaV3_4G006720 vs. TrEMBL
Match: tr|K7KRV8|K7KRV8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807571 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.4e-111
Identity = 206/305 (67.54%), Postives = 240/305 (78.69%), Query Frame = 0


Query: 13  SQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCNCTCSLNGGVVIR 72
           S+PF +A  VT LCFL A+F          +R + +L       R  +C C+ N      
Sbjct: 8   SEPFLVALAVTALCFLFALFA--------LLRSSFSLPRRFTPPRKHHCDCASN------ 67

Query: 73  GLDPRAEITSSTSTSMPYLNGRAVEVLEKAPV----VVTERQTGASMMEQLVPEITTHAL 132
                     S + ++PYLNG   E+LE +PV    V+TER+TG+SMME+LVPEITTHAL
Sbjct: 68  ----------SDAGAVPYLNGGCTEMLEPSPVPAPAVLTERRTGSSMMEELVPEITTHAL 127

Query: 133 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSYYAATRTIM 192
           SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD+VTP NGWK+YYAATR I+
Sbjct: 128 SYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIV 187

Query: 193 NINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAFNWEQGINF 252
           NIN +F+NI+RD+SLQAMSRFWLNADYVKCIHASGE FSGYNAV+QSWQ+AFNWEQG+N 
Sbjct: 188 NINTEFFNIVRDKSLQAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLNT 247

Query: 253 QVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQ 312
           QV+DVRAR+LTDMAWV+MKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHS VM   G+++ 
Sbjct: 248 QVQDVRARILTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSCVM--NGDVDL 286

Query: 313 QMVHG 314
            +VHG
Sbjct: 308 MIVHG 286

The following BLAST results are available for this feature:

BLAST of CsaV3_4G006720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149013.1	1.5e-176	100.00	PREDICTED: F-box protein SKIP8 [Cucumis sativus] >KGN53419.1 hypothetical protei...	[more]
XP_008451931.1	2.7e-175	98.72	PREDICTED: F-box protein SKIP8 [Cucumis melo]	[more]
XP_022931549.1	4.2e-168	94.89	F-box protein SKIP8-like [Cucurbita moschata] >XP_023553511.1 F-box protein SKIP...	[more]
XP_022985415.1	8.0e-167	94.25	F-box protein SKIP8 [Cucurbita maxima]	[more]
XP_022942140.1	2.8e-164	91.05	F-box protein SKIP8-like [Cucurbita moschata]	[more]

BLAST of CsaV3_4G006720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10925.1	1.3e-89	66.38	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G23960.1	4.7e-36	56.52	F-box family protein	[more]

BLAST of CsaV3_4G006720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93YV9\|SKIP8_ARATH	2.3e-88	66.38	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]
sp\|Q9T0B0\|FB335_ARATH	8.5e-35	56.52	Probable F-box protein At4g23960 OS=Arabidopsis thaliana OX=3702 GN=At4g23960 PE...	[more]

BLAST of CsaV3_4G006720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KX34\|A0A0A0KX34_CUCSA	9.6e-177	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052690 PE=4 SV=1	[more]
tr\|A0A1S3BTF9\|A0A1S3BTF9_CUCME	1.8e-175	98.72	F-box protein SKIP8 OS=Cucumis melo OX=3656 GN=LOC103493084 PE=4 SV=1	[more]
tr\|A0A2P5D702\|A0A2P5D702_9ROSA	3.0e-114	66.67	F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_26039...	[more]
tr\|W9S3I3\|W9S3I3_9ROSA	2.6e-113	69.72	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003143 PE=4 SV=1	[more]
tr\|K7KRV8\|K7KRV8_SOYBN	1.4e-111	67.54	Uncharacterized protein OS=Glycine max OX=3847 GN=100807571 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR032710	NTF2-like_dom_sf
IPR001810	F-box_dom
IPR037401	SnoaL-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G006720.1	CsaV3_4G006720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.50		coord: 178..307 e-value: 3.1E-31 score: 110.2
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 115..157 e-value: 3.2E-6 score: 29.0
None	No IPR available	PANTHER	PTHR15537:SF4	F-BOX PROTEIN SKIP8	coord: 15..313
None	No IPR available	PANTHER	PTHR15537	FAMILY NOT NAMED	coord: 15..313
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 187..300 e-value: 2.7E-25 score: 88.9
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 113..159 score: 8.597
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	SSF54427	NTF2-like	coord: 182..300
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 112..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G006720	CSPI04G06500	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G006720	Cucsa.114900	Cucumber (Gy14) v1	cgycucB152
CsaV3_4G006720	CmaCh16G005380	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G006720	CmaCh04G006780	Cucurbita maxima (Rimu)	cmacucB0847
CsaV3_4G006720	CmoCh04G007230	Cucurbita moschata (Rifu)	cmocucB0833
CsaV3_4G006720	CmoCh16G005900	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G006720	Cp4.1LG14g02700	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G006720	CsGy4G006430	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G006720	Carg13080	Silver-seed gourd	carcucB0049
CsaV3_4G006720	Carg11444	Silver-seed gourd	carcucB0689
CsaV3_4G006720	Cla012814	Watermelon (97103) v1	cucwmB317
CsaV3_4G006720	MELO3C016277	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G006720	ClCG07G011500	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G006720	Lsi07G007290	Bottle gourd (USVL1VR-Ls)	cuclsiB323
CsaV3_4G006720	MELO3C016277.2	Melon (DHL92) v3.6.1	cucmedB311
CsaV3_4G006720	Cla97C07G138260	Watermelon (97103) v2	cucwmbB329
CsaV3_4G006720	Bhi01G002310	Wax gourd	cucwgoB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G006720	Cucumber (Chinese Long) v3	cuccucB117
CsaV3_4G006720	Cucumber (Chinese Long) v3	cuccucB174
CsaV3_4G006720	Cucumber (Gy14) v2	cgybcucB129
CsaV3_4G006720	Cucumber (Gy14) v2	cgybcucB229
CsaV3_4G006720	Cucumber (Gy14) v1	cgycucB469
CsaV3_4G006720	Cucurbita pepo (Zucchini)	cpecucB0207
CsaV3_4G006720	Cucurbita pepo (Zucchini)	cpecucB0503
CsaV3_4G006720	Wild cucumber (PI 183967)	cpicucB161
CsaV3_4G006720	Wild cucumber (PI 183967)	cpicucB281
CsaV3_4G006720	Bottle gourd (USVL1VR-Ls)	cuclsiB318
CsaV3_4G006720	Melon (DHL92) v3.5.1	cucmeB267
CsaV3_4G006720	Melon (DHL92) v3.6.1	cucmedB262
CsaV3_4G006720	Melon (DHL92) v3.6.1	cucmedB289
CsaV3_4G006720	Watermelon (Charleston Gray)	cucwcgB299
CsaV3_4G006720	Watermelon (97103) v1	cucwmB338
CsaV3_4G006720	Watermelon (97103) v1	cucwmB343
CsaV3_4G006720	Watermelon (97103) v2	cucwmbB270
CsaV3_4G006720	Watermelon (97103) v2	cucwmbB319
CsaV3_4G006720	Wax gourd	cucwgoB367