CmaCh04G004890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G004890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein disulfide-isomerase SCO2-like protein, putative
Location	Cma_Chr04 : 2497330 .. 2500897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCACTGCTGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCAACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCACTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGTCGCGTCAAAGCAAACGCCATGGAGAAAAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCCCGCCTGAGGAGATTGATCGACGGCTTCAGTGCGATCCCCAAGTGGAGGTCAGTAATTCGCATCATAACTTTTGATATAGTTCTTCTGAATTCGAACTTGCGCTTCTGGTGCTTTTACTTTTCCTAATTCTGCATATCGTGGAAAGCGATTTGCAGTGGCTTCCCTGTTATGTGCCCTAAAACGTATGTTCTTGACTCATTTGAGAGGTTACTTTGAATTGCTTTAGAAAACGACTTGTTCATTGATTCAATTATCTGGAAACTGGAGATTTACTTGTTACAGTTAAAGCATTGATATTATCAACGACCCTAGCATGCTTTAGCTGAGTTTATCTCCTCAAAATTAGGCTGCATTGGTGGGTTTAATGCCCTTTCCAACCTCACAAATATGCCAGTTATCTCCGTTTTGGAGTTTTGGATTTGAAGCCATTCTTGTAAATTGTAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAGCAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGGTATTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTTCCATTTTTCCTAAGGGAACGAACACATAATGCAAATATTAGTGTCTTGCAATATTGTATTGTTGGAGTTTTACTGCTTCTTATCATGAAAACGAAACACTTGTTAATATTCTTCTCGAGTTCAACCACATGTAGGGTGAGAGATTGGATCCTCTAATCTCTGGATCGAGGATATATATCCTAACCATTTGAGTTATGCTAACGTTCTTATTTAGATTGGCGTTTTGTTAATCAAGAGTTATTGCTTGCTATCTTCATTGATGTGCTTTTGGCATTGACAGCTATGAGCATGATATACCCTAATCAGTTGAGTTATGCTTAAGTTGATGCTAATGTCCTTATTTAAATCGGTGTTTTGTCGATCAATAGTTATTGTTTGCTATCTTCATTGATGTGCTTTTGGCATTGTCAACTATGAGCATGATATACCCTAACCAGTTGAGTTATGCTTAGATTGATGTTAATGTTCTTATTTAAATCGGCGTTTTGTCAATCATTAGTTATTGCTTGCTATCTTCATTGACGTGCTTTTAGCATTGACAACTATGAGCATGATATACCCTAATCAGTTGAGTTATGCTTAGGTTGATGCTAATGTTCTTATTTAAATCGGCATTTTGTCTATCAATAGTTATTGCTTGCTATCTTCACTGACGTGCTTTTGACATTGACAACTATGAGCATGATATACCCTAATCAGTTGAGTCCTTATTTGTCAACCAACCATTATTGCTTGCTATCTTCATTGACGTACTTTTGGTATCGATAATTATGAGAATGATATACCCTAATCAGTCTGAGTTAGGCTCAGGTTGACGCTAATGTCACGTTTTGTCAATCAACTGTTATGACTTGTTATCTTCAATGACGTACTTTTGGCATTGAAAACTATGAGAATGACGGGTAGGAAGGAGTACAAATGAAAATCCTAGGAATTTCTGCTCATCATTGAATTTCTTTGATAAATAGGTAGCTTCAATGGTCTACTTTCTGTATCGATCAAGGGCTTTTATCATTCTGGTTTTAAATTTGTCTCAGACAATAGGAACTTCTGTTACAAATGATGCTTCTTCTTCACCAACTAGAAACTCTTTTACACTTCTAATGAAAAGTTCATGTTTTTTACAACACAAAAACATTTTCCTCGTAACTAATGTCGGATTCACTGATACTTCCAACAAGTTTTCATTGTATGCTGATTCTTGTTTTTCATTTCAATGCATTTTCTCCCCTTATATCAATACAATTTCTCCAACCTCTTGATGCTTACCAAAACAACATCTTGACAATGTTGTGTAGTAACTTTGAGGACATGACATGATGGCTGCCTTTCCAATCAAAAGAAATGGACCTAATGGATAGTTCTCCCATTTTTGTGGGCGCTCGCTCCTTTTATATGTCCTTGTGTTCTTTCATTTTTGCTCGTTAAAAGTTCGGTTATTCGTGCTGATTTTCAGAACCTAAATCTTGGTTCAAATTTGCCTCTTCTGGTTGTTTGCAATTCTGCAGGGTATGTGCAGAAGATAACAGCTCGAAAGGACATTGAACTAATGGAGGATTTGGATAATGGAAAACCATTGTGATGTGATTCATTGCATTATTTACTCTCTTTTTTGGAAAATAGTACCTCTCTAACTTCTTCACCCCTGAGGAGTTGTAATTTTTCACACACAGATTATCCTTTGTATTGATAATAGGCAACATACACAACTGAGAGAATGTTGGACTGCTAAGCAAACACTGGCGAAATAAAAGTACTGCAAATTTGGCAGTGAGCTTCGGCCTTGTTCTTCACTATCTTTAGCATTGTTAAGTCTTGATTCTCTGTTACAATCCTGCAAAGAGTTTGTTCTAGATACTATTTTTCAAGTGAACTTATATTTATGTATGTTACGGTTAGAGATTCAACCTCGAGAGAAGGTTACTAATGCTTTAACGGTCAAACTCAAGTTGGTTTTTACTTTTAATCTTTGAAGTTACTTAGAAGTTATAAGTGAATAATCGGTAATTATTCCTTTTGTAGGTAAAAGATACTCTTACATGTTCTATTGACAACTATTTTTTCAAAATAATCTATTTTCAGACCGAATTTAGAATTGAGTTTGGTTGATTCTACGAGACACTTGTAACTACGAGAATATATGTGTACAGGTCAAAATGAATATAACTGAGCAATAATTAATATGTACAATCTTCTTTGAGATCGGAGTGAAACACCTTAGTTTCGAATTTGAACAAAACTAATTGGATAAGATATAGGTGTGTTCGAGTGATGTTTTCGACAACTTTGCTGGAATCACCAAATGGAATATCTTTCCTATTTTGTCCCTTATCAATGTTGATCATTTCAATCATTCACCCCTCTATTGTTTTAACCTTAAAGAAAGAAAGAAAGCATCAAAAGGGTAATCCAGACAATTGACCGCAGTTCAGGGATATATTCGGTAATTCCTTGAGTCAAATCAAGCTCGACTGCAATATAAAGCCGCCGCCTTTTGGCGCCAAAATCAGGATTTTGAACCGATACCAATTGCTGCTCCGTCGCCGGGAGAAACTTTCTACATTTCGAGATTGTGA

mRNA sequence

ATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCACTGCTGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCAACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCACTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGTCGCGTCAAAGCAAACGCCATGGAGAAAAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCCCGCCTGAGGAGATTGATCGACGGCTTCAGTGCGATCCCCAAGTGGAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAGCAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGCTCGACTGCAATATAAAGCCGCCGCCTTTTGGCGCCAAAATCAGGATTTTGAACCGATACCAATTGCTGCTCCGTCGCCGGGAGAAACTTTCTACATTTCGAGATTGTGA

Coding sequence (CDS)

ATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCACTGCTGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCAACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCACTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGTCGCGTCAAAGCAAACGCCATGGAGAAAAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCCCGCCTGAGGAGATTGATCGACGGCTTCAGTGCGATCCCCAAGTGGAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAGCAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGCTCGACTGCAATATAAAGCCGCCGCCTTTTGGCGCCAAAATCAGGATTTTGAACCGATACCAATTGCTGCTCCGTCGCCGGGAGAAACTTTCTACATTTCGAGATTGTGA

Protein sequence

MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDATGGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLPMTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCIPCLGVARLQYKAAAFWRQNQDFEPIPIAAPSPGETFYISRL

Homology

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BLAST of CmaCh04G004890 vs. Swiss-Prot
Match: SCO2_ARATH (Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.4e-38
Identity = 77/129 (59.69%), Postives = 90/129 (69.77%), Query Frame = 1


Query: 62  GFRLGQEYDGGASSGTVDGVGRSGSGNGR-VKANAMEKKWSRDRESYLVDSSEVLPLPMT 121
           G RL +E D  + +     V  +  GNG   K       WS+  ESYLVD  + LPLPMT
Sbjct: 40  GIRLPREADSTSDTARSRDVSVAAGGNGEGAKWRKRRLLWSKSGESYLVDDGDALPLPMT 99

Query: 122 YPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCI 181
           YPD+SPV P+ IDRRLQCDP VEDC+EVVYEWTGKCRSCQGSG VSYY KRG+E+ CKCI
Sbjct: 100 YPDTSPVSPDVIDRRLQCDPVVEDCREVVYEWTGKCRSCQGSGTVSYYKKRGKEVICKCI 159

Query: 182 PCLGVARLQ 190
           PC G+  +Q
Sbjct: 160 PCQGIGYVQ 168

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BLAST of CmaCh04G004890 vs. TrEMBL
Match: A0A0A0L6G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207360 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.0e-78
Identity = 149/191 (78.01%), Postives = 161/191 (84.29%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTAT--RQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATD 60
           MFA+NP+S FFPSNPT    RQ SIS   SFR S A  GDAS  PS SRLFNFPS+SATD
Sbjct: 1   MFAINPSSFFFPSNPTTATARQHSISPPSSFRLSLAATGDASPDPSISRLFNFPSLSATD 60

Query: 61  ATGGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           ATGGF LGQ+YD GASS  +DG GR   GNG VK NAMEKKWSRDRESYLVD S+VLPLP
Sbjct: 61  ATGGFSLGQDYDAGASSPVIDGPGRFARGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLP 120

Query: 121 MTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCK 180
           MTYPDSSPV P+EIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSG+VSYY+KRGREITCK
Sbjct: 121 MTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREITCK 180

Query: 181 CIPCLGVARLQ 190
           CIPCLG+  +Q
Sbjct: 181 CIPCLGIGYVQ 191

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BLAST of CmaCh04G004890 vs. TrEMBL
Match: A0A067LE01_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01623 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.9e-55
Identity = 119/203 (58.62%), Postives = 143/203 (70.44%), Query Frame = 1


Query: 1   MFAVNPTSLFF--------PSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFP 60
           M  +NPTSLFF        P +PTAT   + + S S R  C  AGD   GP+F R F F 
Sbjct: 1   MLPINPTSLFFCSKPSTLIPISPTAT---TTTTSTSHR--CFAAGDLRAGPTFPRWFQF- 60

Query: 61  SVSATDATGGFRLGQEYDGGASSGTVDGVGRS------GSGNGRVKANAMEKKWSRDRES 120
             SA DA G  R+GQE +G ASS T DG   +      G  NG V+ NA EKKWSR+RES
Sbjct: 61  -TSAADA-GSIRIGQESEGPASSPTADGASIAPQRRGVGGSNGSVRVNAKEKKWSRNRES 120

Query: 121 YLVDSSEVLPLPMTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVS 180
           YL D+ +VLPLPMTYP+S PVP EEID+RL+CD +++DCKEVVYEWTGKCRSCQGSG+VS
Sbjct: 121 YLTDNEDVLPLPMTYPNSKPVPAEEIDKRLRCDAEIQDCKEVVYEWTGKCRSCQGSGYVS 180

Query: 181 YYSKRGREITCKCIPCLGVARLQ 190
           YY+KRG+EITCKC+PCLG+  +Q
Sbjct: 181 YYNKRGKEITCKCVPCLGIGYVQ 195

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BLAST of CmaCh04G004890 vs. TrEMBL
Match: B9HS05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10520g PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-54
Identity = 115/191 (60.21%), Postives = 136/191 (71.20%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           M +++PTSLF PS PT  R +S      FR  C+ AGD S    F R   F S +     
Sbjct: 1   MLSISPTSLFLPSKPTFNRTRS------FR--CSAAGDLS----FPRWLQFTSAADASIG 60

Query: 61  GG-FRLGQEYDGGASS-GTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           GG  R+GQE DG AS+ G   G G   SG   V+ NA EKKWSR+RESYL D+ + LPLP
Sbjct: 61  GGSIRIGQELDGAASADGERKGFG-GNSGGSSVRVNAREKKWSRNRESYLADNEDALPLP 120

Query: 121 MTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCK 180
           MTYPDS PVPPEEID+RL CDP+VEDC+EVVYEWTGKCRSCQGSGFVSYY+KRG+E+TCK
Sbjct: 121 MTYPDSKPVPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCK 178

Query: 181 CIPCLGVARLQ 190
           C+PCLG+  +Q
Sbjct: 181 CVPCLGIGYVQ 178

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BLAST of CmaCh04G004890 vs. TrEMBL
Match: A9PJQ1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-54
Identity = 115/191 (60.21%), Postives = 136/191 (71.20%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           M +++PTSLF PS PT  R +S      FR  C+ AGD S    F R   F S +     
Sbjct: 1   MLSISPTSLFLPSKPTFNRTRS------FR--CSAAGDLS----FPRWLQFTSAADASIG 60

Query: 61  GG-FRLGQEYDGGASS-GTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           GG  R+GQE DG AS+ G   G G   SG   V+ NA EKKWSR+RESYL D+ + LPLP
Sbjct: 61  GGSIRIGQELDGAASADGERKGFG-GNSGGSSVRVNAREKKWSRNRESYLADNEDALPLP 120

Query: 121 MTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCK 180
           MTYPDS PVPPEEID+RL CDP+VEDC+EVVYEWTGKCRSCQGSGFVSYY+KRG+E+TCK
Sbjct: 121 MTYPDSKPVPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCK 178

Query: 181 CIPCLGVARLQ 190
           C+PCLG+  +Q
Sbjct: 181 CVPCLGIGYVQ 178

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BLAST of CmaCh04G004890 vs. TrEMBL
Match: B9RYI8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813630 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-51
Identity = 109/197 (55.33%), Postives = 136/197 (69.04%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           M  +NP SLFFPS P+     S+    +  R  A+AGD    P+F R + F   SA D T
Sbjct: 1   MLPINPNSLFFPSKPS--HLLSLPSITTSHRCFASAGDLRHIPTFPRWW-FHFTSAAD-T 60

Query: 61  GGFRLGQEYDGGASSGTVDGV--------GRSGSGNGRVKANAMEKKWSRDRESYLVDSS 120
           G  R+GQE DG  SS   D          G  GSG+  ++ NA EKKWSR+RESYLVD+ 
Sbjct: 61  GSIRIGQESDGATSSPVADSSSSAGPQRRGLGGSGSSSIRVNAKEKKWSRNRESYLVDNE 120

Query: 121 EVLPLPMTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRG 180
           + LPLPMTYPDS PV PEEID+RL+CDP+++DC+EVVYEWTGKCRSCQGSG+VSY++KRG
Sbjct: 121 DALPLPMTYPDSKPVSPEEIDKRLRCDPEIQDCREVVYEWTGKCRSCQGSGYVSYFNKRG 180

Query: 181 REITCKCIPCLGVARLQ 190
           +E  CKC+PCLG+  +Q
Sbjct: 181 KETICKCVPCLGIGYVQ 193

[Close]

BLAST of CmaCh04G004890 vs. TAIR10
Match: AT3G19220.1 (AT3G19220.1 protein disulfide isomerases)

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-39
Identity = 77/129 (59.69%), Postives = 90/129 (69.77%), Query Frame = 1


Query: 62  GFRLGQEYDGGASSGTVDGVGRSGSGNGR-VKANAMEKKWSRDRESYLVDSSEVLPLPMT 121
           G RL +E D  + +     V  +  GNG   K       WS+  ESYLVD  + LPLPMT
Sbjct: 40  GIRLPREADSTSDTARSRDVSVAAGGNGEGAKWRKRRLLWSKSGESYLVDDGDALPLPMT 99

Query: 122 YPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCI 181
           YPD+SPV P+ IDRRLQCDP VEDC+EVVYEWTGKCRSCQGSG VSYY KRG+E+ CKCI
Sbjct: 100 YPDTSPVSPDVIDRRLQCDPVVEDCREVVYEWTGKCRSCQGSGTVSYYKKRGKEVICKCI 159

Query: 182 PCLGVARLQ 190
           PC G+  +Q
Sbjct: 160 PCQGIGYVQ 168

[Close]

BLAST of CmaCh04G004890 vs. NCBI nr
Match: gi|659112230|ref|XP_008456126.1| (PREDICTED: protein disulfide-isomerase SCO2 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 2.3e-79
Identity = 150/189 (79.37%), Postives = 160/189 (84.66%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           MFA+NP+SLFFPSNPT  RQ SIS   SFR   A  GDAS  PS SRLFNFPS+SATDAT
Sbjct: 1   MFAINPSSLFFPSNPTTPRQHSISPPSSFRLYGAATGDASPEPSISRLFNFPSLSATDAT 60

Query: 61  GGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
            GFRLGQ+YD GASS  VD  GR G GNG VK NAMEKKWSRDRESYLVD S+VLPLPM 
Sbjct: 61  AGFRLGQDYDAGASSPAVDAPGRFGRGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLPMA 120

Query: 121 YPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCI 180
           YPDSSPV P+EIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSG+VSYY+KRGREITCKCI
Sbjct: 121 YPDSSPVSPDEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREITCKCI 180

Query: 181 PCLGVARLQ 190
           PCLG+  +Q
Sbjct: 181 PCLGIGYVQ 189

[Close]

BLAST of CmaCh04G004890 vs. NCBI nr
Match: gi|778680082|ref|XP_004140700.2| (PREDICTED: protein disulfide-isomerase SCO2 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 1.5e-78
Identity = 149/191 (78.01%), Postives = 161/191 (84.29%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTAT--RQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATD 60
           MFA+NP+S FFPSNPT    RQ SIS   SFR S A  GDAS  PS SRLFNFPS+SATD
Sbjct: 1   MFAINPSSFFFPSNPTTATARQHSISPPSSFRLSLAATGDASPDPSISRLFNFPSLSATD 60

Query: 61  ATGGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           ATGGF LGQ+YD GASS  +DG GR   GNG VK NAMEKKWSRDRESYLVD S+VLPLP
Sbjct: 61  ATGGFSLGQDYDAGASSPVIDGPGRFARGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLP 120

Query: 121 MTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCK 180
           MTYPDSSPV P+EIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSG+VSYY+KRGREITCK
Sbjct: 121 MTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREITCK 180

Query: 181 CIPCLGVARLQ 190
           CIPCLG+  +Q
Sbjct: 181 CIPCLGIGYVQ 191

[Close]

BLAST of CmaCh04G004890 vs. NCBI nr
Match: gi|802563406|ref|XP_012066880.1| (PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 119/203 (58.62%), Postives = 143/203 (70.44%), Query Frame = 1


Query: 1   MFAVNPTSLFF--------PSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFP 60
           M  +NPTSLFF        P +PTAT   + + S S R  C  AGD   GP+F R F F 
Sbjct: 1   MLPINPTSLFFCSKPSTLIPISPTAT---TTTTSTSHR--CFAAGDLRAGPTFPRWFQF- 60

Query: 61  SVSATDATGGFRLGQEYDGGASSGTVDGVGRS------GSGNGRVKANAMEKKWSRDRES 120
             SA DA G  R+GQE +G ASS T DG   +      G  NG V+ NA EKKWSR+RES
Sbjct: 61  -TSAADA-GSIRIGQESEGPASSPTADGASIAPQRRGVGGSNGSVRVNAKEKKWSRNRES 120

Query: 121 YLVDSSEVLPLPMTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVS 180
           YL D+ +VLPLPMTYP+S PVP EEID+RL+CD +++DCKEVVYEWTGKCRSCQGSG+VS
Sbjct: 121 YLTDNEDVLPLPMTYPNSKPVPAEEIDKRLRCDAEIQDCKEVVYEWTGKCRSCQGSGYVS 180

Query: 181 YYSKRGREITCKCIPCLGVARLQ 190
           YY+KRG+EITCKC+PCLG+  +Q
Sbjct: 181 YYNKRGKEITCKCVPCLGIGYVQ 195

[Close]

BLAST of CmaCh04G004890 vs. NCBI nr
Match: gi|224105541|ref|XP_002313849.1| (hypothetical protein POPTR_0009s10520g [Populus trichocarpa])

HSP 1 Score: 219.2 bits (557), Expect = 7.4e-54
Identity = 115/191 (60.21%), Postives = 136/191 (71.20%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           M +++PTSLF PS PT  R +S      FR  C+ AGD S    F R   F S +     
Sbjct: 1   MLSISPTSLFLPSKPTFNRTRS------FR--CSAAGDLS----FPRWLQFTSAADASIG 60

Query: 61  GG-FRLGQEYDGGASS-GTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           GG  R+GQE DG AS+ G   G G   SG   V+ NA EKKWSR+RESYL D+ + LPLP
Sbjct: 61  GGSIRIGQELDGAASADGERKGFG-GNSGGSSVRVNAREKKWSRNRESYLADNEDALPLP 120

Query: 121 MTYPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCK 180
           MTYPDS PVPPEEID+RL CDP+VEDC+EVVYEWTGKCRSCQGSGFVSYY+KRG+E+TCK
Sbjct: 121 MTYPDSKPVPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCK 178

Query: 181 CIPCLGVARLQ 190
           C+PCLG+  +Q
Sbjct: 181 CVPCLGIGYVQ 178

[Close]

BLAST of CmaCh04G004890 vs. NCBI nr
Match: gi|702392382|ref|XP_010066023.1| (PREDICTED: protein disulfide-isomerase SCO2 [Eucalyptus grandis])

HSP 1 Score: 218.8 bits (556), Expect = 9.6e-54
Identity = 110/189 (58.20%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60
           MF +NP+S F    P+      ++  PS     A AGD   GP+F R   FP+ SA DA 
Sbjct: 46  MFPINPSSAFALPKPSTL----LAARPSLACRAAGAGDVPAGPAFPRWLQFPAASAGDAA 105

Query: 61  GGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
              R+G  +DGGA +       R G G G VKANA EK+WSRDRESYL D  E LPLPMT
Sbjct: 106 ---RVGPNFDGGAVADAPAVARRGGGGTGGVKANAREKRWSRDRESYLTDDGEPLPLPMT 165

Query: 121 YPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCI 180
           YP++SPV P+EID+RL+CDP VEDCKEVVYEWTGKCRSCQG+GFVSYY+KRGRE  CKC+
Sbjct: 166 YPNTSPVSPDEIDKRLRCDPVVEDCKEVVYEWTGKCRSCQGTGFVSYYNKRGRETICKCV 225

Query: 181 PCLGVARLQ 190
           PCLG+  +Q
Sbjct: 226 PCLGIGYVQ 227

The following BLAST results are available for this feature:

BLAST of CmaCh04G004890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCO2_ARATH	7.4e-38	59.69	Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2 PE=1 SV=1	[more]

BLAST of CmaCh04G004890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6G9_CUCSA	1.0e-78	78.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207360 PE=4 SV=1	[more]
A0A067LE01_JATCU	7.9e-55	58.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01623 PE=4 SV=1	[more]
B9HS05_POPTR	5.1e-54	60.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10520g PE=4 SV=1	[more]
A9PJQ1_9ROSI	5.1e-54	60.21	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
B9RYI8_RICCO	2.4e-51	55.33	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813630 PE=4 SV=1	[more]

BLAST of CmaCh04G004890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19220.1	4.2e-39	59.69	protein disulfide isomerases	[more]

BLAST of CmaCh04G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112230\|ref\|XP_008456126.1\|	2.3e-79	79.37	PREDICTED: protein disulfide-isomerase SCO2 [Cucumis melo]	[more]
gi\|778680082\|ref\|XP_004140700.2\|	1.5e-78	78.01	PREDICTED: protein disulfide-isomerase SCO2 [Cucumis sativus]	[more]
gi\|802563406\|ref\|XP_012066880.1\|	1.1e-54	58.62	PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]	[more]
gi\|224105541\|ref\|XP_002313849.1\|	7.4e-54	60.21	hypothetical protein POPTR_0009s10520g [Populus trichocarpa]	[more]
gi\|702392382\|ref\|XP_010066023.1\|	9.6e-54	58.20	PREDICTED: protein disulfide-isomerase SCO2 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G004890.1	CmaCh04G004890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 221..221 scor
None	No IPR available	PANTHER	PTHR36035	FAMILY NOT NAMED	coord: 82..207 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G004890	CmoCh04G005260	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G004890	Cp4.1LG01g02250	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G004890	Carg08160	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G004890	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G004890	Cucurbita pepo (Zucchini)	cmacpeB749
CmaCh04G004890	Bottle gourd (USVL1VR-Ls)	cmalsiB662
CmaCh04G004890	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G004890	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G004890	Cucumber (Gy14) v2	cgybcmaB965
CmaCh04G004890	Melon (DHL92) v3.6.1	cmamedB754
CmaCh04G004890	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G004890	Silver-seed gourd	carcmaB0925
CmaCh04G004890	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G004890	Cucumber (Chinese Long) v3	cmacucB0918
CmaCh04G004890	Watermelon (97103) v2	cmawmbB744
CmaCh04G004890	Watermelon (97103) v2	cmawmbB763
CmaCh04G004890	Wax gourd	cmawgoB0852
CmaCh04G004890	Cucurbita maxima (Rimu)	cmacmaB163
CmaCh04G004890	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G004890	Cucurbita maxima (Rimu)	cmacmaB457
CmaCh04G004890	Cucumber (Gy14) v1	cgycmaB0629
CmaCh04G004890	Cucumber (Gy14) v1	cgycmaB0687
CmaCh04G004890	Cucurbita moschata (Rifu)	cmacmoB718
CmaCh04G004890	Cucurbita moschata (Rifu)	cmacmoB678
CmaCh04G004890	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G004890	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G004890	Wild cucumber (PI 183967)	cmacpiB786
CmaCh04G004890	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G004890	Cucumber (Chinese Long) v2	cmacuB776
CmaCh04G004890	Melon (DHL92) v3.5.1	cmameB672
CmaCh04G004890	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G004890	Melon (DHL92) v3.5.1	cmameB711
CmaCh04G004890	Watermelon (Charleston Gray)	cmawcgB643
CmaCh04G004890	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G004890	Watermelon (97103) v1	cmawmB703
CmaCh04G004890	Watermelon (97103) v1	cmawmB725