Carg08160 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08160
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein disulfide-isomerase SCO2
Location	Cucurbita_argyrosperma_scaffold_050 : 1052387 .. 1055240 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCCACTGCCTATGAACACGCCGGTGGCCACAATCCATAATTTCCCTTCTCCGTCAGACAGTTCCGTTCATTGATAGAAGCTAAACAATCCGATTGACTTCTACGTTCGGGTAATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCGCTGCCGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCTACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCTCTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGCAGCGTCAAAGCAAACGCCATGGAGAAGAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCACGCCTGAGGAGATTGACCGACGGCTTCAGTGCGATCCCCAAGTGGAGGTCAGTAATTCGCATCATAACTTTTGATATAGTTCTTCTGAATTCAAACTTGCGCTTCTGGTGCTTTTACTTTTTCCTAATCCTGCATATCGTAGAAAGCGATTTGCAGTGGCTTCCCTGTTATGTGCCCTAGAACGTATGTTCTTGACTCATTTGAGAGGTTACTTTGAATTTCTTTAGAAAACGACTTGTTACATTGATTCAATTATCTGGAAACTGGAGATTTACTTGTTACAGTTGAAGTATTGATATTATGAACGACCTTAGCATGCTTTAGATGAGTTTATCTCCTCAAAATTAGGCTGCATTGGTGGGTTTAATGCCCTTTCCAACCTCACAAATATGCCAGTTATCTCCGTTTTGGAGTTTTGGATTTGAAGCCATTCTTGTAAATTGTAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAACAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGGTATTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTTCCATTTTTCCTAAGGGAACGAACACATAATGCAAATAGTAGTGTCTTGCAATGTTGTATTGTTGGAGTTTTACTGCTTCTTATCATGAAAACGAAACACTTTCTTGTTAATATTCTGCTCGAGTTCAACCAACATGTAGGGTGAGAGATTGGATCTTTTAATGTCAGGATCGAGGATATATATCCTAACCAGTTGAGTTATGCTAACATCCTTATTTAGATTGACATTTTGTTAATCAATAGTTATTGCTTGCTATCTTCATTGACGTGCTTTTGACATAGACAACTATGAGCATGAAATACCTTAATCAGTTGAGTTATGCTTAGGTTGATGCTAATGTCCTTATTTAAATCGGTGTTTTGTCGATCAATAGTTATTGCTTGTTATCTTCATTGACGTGCTTTTGGCATTGACAGCTATGAGCATGATATACCCTAATCAGTTGAGTTATGCTTAGGTTGATGCTAATGTCCTTATTTAAATCGGTGTTTTGTCGATCAATAGTTATTGCTTGCTATCTTCATTGACGTGCTTTTGGCATTGACAACTATGAGCATGATATACCCTAATCAGTTGAGTCCTTATATATTGACGTTTTGTCAACCAACCATTATTGCTTGCTATCTTCATTGACGTACTTTTGGTATTGACAACTATGAGCATGATATACCCTAATCAGTTGAGTTATGCTCAAGTTGATGCTAATGTCCTTATTTAGATTGACGTTTTGTCAATCAACCGTTATGGCTTGTTATCTTGAATGACGTACTTTTGGCATTGACAACTATGAGCATGACGGTAGGAGTCCAAATGAAAATCCTAGGAATTTCTGCTCATCATTGAATTTCTTTGATAAAATGATAGCTTCAATGGTCTACTTTCTGTTTAGATCAAGGGCTTTTATCATTCTGGTTTTTAATTTGTCTCGGACAATAGGAACTTCTGTTACAAATGATGCTTCTTCTTCACCAACTAGAAACTCTTTTACACTTCCAATGAAAAATTCATGTTTTTTACAACACAAAAACATTTCCTCGTAACTAATGTCGGATTCACTTATACATCCAACAAATTTTCATTGTATGCTCTGATTCTTGCTTTTCATTTCAATGCATTTTCTTCCTTCATATCAATACAATTTCTCCAACCTCTTGATGCTTACCAAACCAACATCTTGACAATATTGTGTAGTAACTTTGAGGACATGACATGATGGCTGTCTTTCCAATCCAAAGAAATGGACCTAATGGATAGTTCTCCCATTTTTGTGGGCGCTCGCTCCTTTTATATGTCCTTGTATTCTTTCATTTTCGCTCGTTAGATGTTCGGTTATTCGTGCTGATTTTCGGAACCTAAATCTTGGATCAAATTTGCCTCTTCTGTTGCTTGCAATTCTGCAGGGTATGTGCAGAAGATAACAGCTCGAAAGGACATTGAACTAATGGAGGATTTGGATAATGGAAAACCATTGTGATGTGATTCAATGCATTATTTACTCTCTTTTTTTGGAAAATAGTACCTCTCTAACTTCTTCACCCCTGAGGAGTTGTAATTTTTCACACACAGATTAGCCTTTGTATTGATAATAGGCAACATAGACAACTGAGAGAATGTTGGACTGCTAAGCAAACAATAAAAGTACTGCAAATTTGGCAGTGAGCTTCGGCCTTGTTCTTCACTATCTTTAGCATTGTTAAGTCTTGATTCTCTGTTACAATCCTGC

mRNA sequence

CCACTCCACTGCCTATGAACACGCCGGTGGCCACAATCCATAATTTCCCTTCTCCGTCAGACAGTTCCGTTCATTGATAGAAGCTAAACAATCCGATTGACTTCTACGTTCGGGTAATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCGCTGCCGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCTACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCTCTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGCAGCGTCAAAGCAAACGCCATGGAGAAGAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCACGCCTGAGGAGATTGACCGACGGCTTCAGTGCGATCCCCAAGTGGAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAACAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGGGTATGTGCAGAAGATAACAGCTCGAAAGGACATTGAACTAATGGAGGATTTGGATAATGGAAAACCATTGTGATGTGATTCAATGCATTATTTACTCTCTTTTTTTGGAAAATAGTACCTCTCTAACTTCTTCACCCCTGAGGAGTTGTAATTTTTCACACACAGATTAGCCTTTGTATTGATAATAGGCAACATAGACAACTGAGAGAATGTTGGACTGCTAAGCAAACAATAAAAGTACTGCAAATTTGGCAGTGAGCTTCGGCCTTGTTCTTCACTATCTTTAGCATTGTTAAGTCTTGATTCTCTGTTACAATCCTGC

Coding sequence (CDS)

ATGTTCGCCGTAAACCCCACTTCCCTTTTCTTCCCTTCCAATCCCACCGCTACACGTCAACAATCCATCTCTCTCTCCCCCTCCTTCCGCCGCAGCTGTGCCGCTGCCGGAGACGCCTCGGTCGGCCCTTCATTTTCTCGGCTGTTCAATTTTCCGTCTGTTTCTGCCACCGACGCTACCGGCGGCTTTCGACTCGGACAAGAGTACGACGGCGGAGCTTCCTCCGGCTCTGTTGATGGAGTGGGGAGGTCGGGTAGCGGAAATGGCAGCGTCAAAGCAAACGCCATGGAGAAGAAATGGTCGCGGGATAGAGAGAGTTACTTGGTCGATAGTAGCGAGGTTCTTCCTCTTCCTATGACTTATCCGGATTCTTCCCCTGTCACGCCTGAGGAGATTGACCGACGGCTTCAGTGCGATCCCCAAGTGGAGGATTGTAAAGAAGTGGTGTATGAATGGACCGGGAAGTGTCGCAGTTGCCAGGGGTCTGGATTTGTTAGCTATTATAACAAAAGGGGAAGAGAGATCACTTGCAAATGTATTCCTTGCCTTGGAGTTGGGTATGTGCAGAAGATAACAGCTCGAAAGGACATTGAACTAATGGAGGATTTGGATAATGGAAAACCATTGTGA

Protein sequence

MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDATGGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCIPCLGVGYVQKITARKDIELMEDLDNGKPL

Homology

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BLAST of Carg08160 vs. NCBI nr
Match: XP_022941608.1 (protein disulfide-isomerase SCO2 [Cucurbita moschata])

HSP 1 Score: 421.8 bits (1083), Expect = 1.4e-114
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT
Sbjct: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
           GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT
Sbjct: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120

Query: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180
           YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI
Sbjct: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180

Query: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 210
           PCLGVGYVQKITARKDIELMEDLDNGKPL
Sbjct: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 209

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BLAST of Carg08160 vs. NCBI nr
Match: XP_023517721.1 (protein disulfide-isomerase SCO2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418.3 bits (1074), Expect = 1.5e-113
Identity = 207/209 (99.04%), Postives = 208/209 (99.52%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFAVNPTSLFFPSNPTATRQQSISLSPS RRSCAAAGDASVGPSFSRLFNFPSVSATDAT
Sbjct: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSLRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
           GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT
Sbjct: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120

Query: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180
           YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNK+GREITCKCI
Sbjct: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKKGREITCKCI 180

Query: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 210
           PCLGVGYVQKITARKDIELMEDLDNGKPL
Sbjct: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 209

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BLAST of Carg08160 vs. NCBI nr
Match: XP_022982746.1 (protein disulfide-isomerase SCO2 [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 1.9e-108
Identity = 200/209 (95.69%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCA AGDASVGPSFSRLFNFPSVSATDAT
Sbjct: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCATAGDASVGPSFSRLFNFPSVSATDAT 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
           GGFRLGQEYDGGASSG+VDGVGRSGSGNG VKANAMEKKWSRDRESYLVDSSEVLPLPMT
Sbjct: 61  GGFRLGQEYDGGASSGTVDGVGRSGSGNGRVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120

Query: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180
           YPDSSPV PEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYY+KRGREITCKCI
Sbjct: 121 YPDSSPVPPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYSKRGREITCKCI 180

Query: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 210
               VGYVQKITARKDIELMEDLDNGKPL
Sbjct: 181 XXXXVGYVQKITARKDIELMEDLDNGKPL 209

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BLAST of Carg08160 vs. NCBI nr
Match: XP_022149147.1 (protein disulfide-isomerase SCO2 [Momordica charantia])

HSP 1 Score: 371.7 bits (953), Expect = 1.6e-99
Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFA+NPTSLFFPSNP   R QS SLSPSF R  A AGDA VGPS SRLFNFPSV+ATDA 
Sbjct: 1   MFAINPTSLFFPSNPATARHQSSSLSPSFLRCRATAGDAPVGPSLSRLFNFPSVAATDAA 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
           GGFRLG EYDGGASS +VDG GRSG GNGSVK NAMEKKWSRDRESYL D S+VLPLPMT
Sbjct: 61  GGFRLGPEYDGGASSAAVDGAGRSGGGNGSVKVNAMEKKWSRDRESYLADDSDVLPLPMT 120

Query: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180
           YPDSSPV PEEIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI
Sbjct: 121 YPDSSPVPPEEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180

Query: 181 PCLGVGYVQKITARKDIELMEDLDNGKPL 210
           PCLG+GYVQKITARKDIELMEDLDNGK L
Sbjct: 181 PCLGIGYVQKITARKDIELMEDLDNGKSL 209

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BLAST of Carg08160 vs. NCBI nr
Match: XP_004140700.2 (PREDICTED: protein disulfide-isomerase SCO2 [Cucumis sativus] >KGN57535.1 hypothetical protein Csa_3G207360 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 5.8e-81
Identity = 161/212 (75.94%), Postives = 172/212 (81.13%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPT--ATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATD 60
           MFA+NP+S FFPSNPT    RQ SIS   SFR S AA GDAS  PS SRLFNFPS+SATD
Sbjct: 1   MFAINPSSFFFPSNPTTATARQHSISPPSSFRLSLAATGDASPDPSISRLFNFPSLSATD 60

Query: 61  ATGGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           ATGGF LGQ+YD GASS  +DG GR   GNG+VK NAMEKKWSRDRESYLVD S+VLPLP
Sbjct: 61  ATGGFSLGQDYDAGASSPVIDGPGRFARGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLP 120

Query: 121 MTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCK 180
           MTYPDSSPV+P+EIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSG+VSYYNKRGREI   
Sbjct: 121 MTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREIXXX 180

Query: 181 CIPCLGVGYVQKITARKDIELMEDLD-NGKPL 210
                      KITARKDIELMEDLD NGKPL
Sbjct: 181 XXXXXXXXXXXKITARKDIELMEDLDNNGKPL 212

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BLAST of Carg08160 vs. TAIR10
Match: AT3G19220.1 (protein disulfide isomerases)

HSP 1 Score: 190.7 bits (483), Expect = 9.4e-49
Identity = 100/180 (55.56%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 27  PSFRRSCAAAGDASVGPSFSRLFNFPSVSATDATGGFRLGQEYDGGASSGSVDGVGRSGS 86
           PS    C AA D  +G                   G RL +E D  + +     V  +  
Sbjct: 23  PSRSLRCRAAADIPLG------------------DGIRLPREADSTSDTARSRDVSVAAG 82

Query: 87  GNG-SVKANAMEKKWSRDRESYLVDSSEVLPLPMTYPDSSPVTPEEIDRRLQCDPQVEDC 146
           GNG   K       WS+  ESYLVD  + LPLPMTYPD+SPV+P+ IDRRLQCDP VEDC
Sbjct: 83  GNGEGAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDC 142

Query: 147 KEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCIPCLGVGYVQKITARKDIELMEDLDN 206
           +EVVYEWTGKCRSCQGSG VSYY KRG+E+ CKCIPC G+GYVQKIT+R DIE+MEDLDN
Sbjct: 143 REVVYEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184

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BLAST of Carg08160 vs. Swiss-Prot
Match: sp|Q93YN0|SCO2_ARATH (Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana OX=3702 GN=SCO2 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47
Identity = 100/180 (55.56%), Postives = 116/180 (64.44%), Query Frame = 0


Query: 27  PSFRRSCAAAGDASVGPSFSRLFNFPSVSATDATGGFRLGQEYDGGASSGSVDGVGRSGS 86
           PS    C AA D  +G                   G RL +E D  + +     V  +  
Sbjct: 23  PSRSLRCRAAADIPLG------------------DGIRLPREADSTSDTARSRDVSVAAG 82

Query: 87  GNG-SVKANAMEKKWSRDRESYLVDSSEVLPLPMTYPDSSPVTPEEIDRRLQCDPQVEDC 146
           GNG   K       WS+  ESYLVD  + LPLPMTYPD+SPV+P+ IDRRLQCDP VEDC
Sbjct: 83  GNGEGAKWRKRRLLWSKSGESYLVDDGDALPLPMTYPDTSPVSPDVIDRRLQCDPVVEDC 142

Query: 147 KEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCIPCLGVGYVQKITARKDIELMEDLDN 206
           +EVVYEWTGKCRSCQGSG VSYY KRG+E+ CKCIPC G+GYVQKIT+R DIE+MEDLDN
Sbjct: 143 REVVYEWTGKCRSCQGSGTVSYYKKRGKEVICKCIPCQGIGYVQKITSRTDIEVMEDLDN 184

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BLAST of Carg08160 vs. TrEMBL
Match: tr|A0A0A0L6G9|A0A0A0L6G9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207360 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.9e-81
Identity = 161/212 (75.94%), Postives = 172/212 (81.13%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPT--ATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATD 60
           MFA+NP+S FFPSNPT    RQ SIS   SFR S AA GDAS  PS SRLFNFPS+SATD
Sbjct: 1   MFAINPSSFFFPSNPTTATARQHSISPPSSFRLSLAATGDASPDPSISRLFNFPSLSATD 60

Query: 61  ATGGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           ATGGF LGQ+YD GASS  +DG GR   GNG+VK NAMEKKWSRDRESYLVD S+VLPLP
Sbjct: 61  ATGGFSLGQDYDAGASSPVIDGPGRFARGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLP 120

Query: 121 MTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCK 180
           MTYPDSSPV+P+EIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSG+VSYYNKRGREI   
Sbjct: 121 MTYPDSSPVSPDEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREIXXX 180

Query: 181 CIPCLGVGYVQKITARKDIELMEDLD-NGKPL 210
                      KITARKDIELMEDLD NGKPL
Sbjct: 181 XXXXXXXXXXXKITARKDIELMEDLDNNGKPL 212

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BLAST of Carg08160 vs. TrEMBL
Match: tr|A0A1S3C370|A0A1S3C370_CUCME (protein disulfide-isomerase SCO2 OS=Cucumis melo OX=3656 GN=LOC103496158 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 5.0e-81
Identity = 158/205 (77.07%), Postives = 168/205 (81.95%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFA+NP+SLFFPSNPT  RQ SIS   SFR   AA GDAS  PS SRLFNFPS+SATDAT
Sbjct: 1   MFAINPSSLFFPSNPTTPRQHSISPPSSFRLYGAATGDASPEPSISRLFNFPSLSATDAT 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPMT 120
            GFRLGQ+YD GASS +VD  GR G GNG+VK NAMEKKWSRDRESYLVD S+VLPLPM 
Sbjct: 61  AGFRLGQDYDAGASSPAVDAPGRFGRGNGTVKVNAMEKKWSRDRESYLVDDSDVLPLPMA 120

Query: 121 YPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKCI 180
           YPDSSPV+P+EIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSG+VSYYNKRGREI     
Sbjct: 121 YPDSSPVSPDEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGREIXXXXX 180

Query: 181 PCLGVGYVQKITARKDIELMEDLDN 206
                    KITARKDIELMEDLDN
Sbjct: 181 XXXXXXXXXKITARKDIELMEDLDN 205

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BLAST of Carg08160 vs. TrEMBL
Match: tr|A0A2I4DPR7|A0A2I4DPR7_9ROSI (protein disulfide-isomerase SCO2-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108982275 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.1e-67
Identity = 138/210 (65.71%), Postives = 155/210 (73.81%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           MFA+ PTSLFFP+ P+A R             C A GD  VGPSF R F+FPS   +   
Sbjct: 1   MFALYPTSLFFPAKPSALR-------------CRATGDIPVGPSFPRWFHFPS---SAEI 60

Query: 61  GGFRLGQEYDGGASSGSVDGVGRSG-SGNGSVKANAME-KKWSRDRESYLVDSSEVLPLP 120
            G R+G + D  A     DG  RSG +GN SVK NA E KKWSR  +SYL D S+ LPLP
Sbjct: 61  SGVRIGHDVDAAAK----DGSSRSGAAGNNSVKVNAREKKKWSRWGDSYLDDDSDALPLP 120

Query: 121 MTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCK 180
           MTYPDSSPV PEEIDRRL+CDPQV+DCKEVVYEWTGKCRSCQGSGF SYYNKRG+EI CK
Sbjct: 121 MTYPDSSPVPPEEIDRRLRCDPQVQDCKEVVYEWTGKCRSCQGSGFASYYNKRGKEIICK 180

Query: 181 CIPCLGVGYVQKITARKDIELMEDLDNGKP 209
           C+PC G+GYVQKITARKDIE+MEDLDNG+P
Sbjct: 181 CLPCAGIGYVQKITARKDIEVMEDLDNGRP 190

[Close]

BLAST of Carg08160 vs. TrEMBL
Match: tr|A9PJQ1|A9PJQ1_9ROSI (Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 136/210 (64.76%), Postives = 157/210 (74.76%), Query Frame = 0


Query: 1   MFAVNPTSLFFPSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDAT 60
           M +++PTSLF PS PT  R +      SFR  C+AAGD     SF R   F S +     
Sbjct: 1   MLSISPTSLFLPSKPTFNRTR------SFR--CSAAGDL----SFPRWLQFTSAADASIG 60

Query: 61  GG-FRLGQEYDGGASS-GSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLP 120
           GG  R+GQE DG AS+ G   G G   SG  SV+ NA EKKWSR+RESYL D+ + LPLP
Sbjct: 61  GGSIRIGQELDGAASADGERKGFG-GNSGGSSVRVNAREKKWSRNRESYLADNEDALPLP 120

Query: 121 MTYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCK 180
           MTYPDS PV PEEID+RL CDP+VEDC+EVVYEWTGKCRSCQGSGFVSYYNKRG+E+TCK
Sbjct: 121 MTYPDSKPVPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCK 180

Query: 181 CIPCLGVGYVQKITARKDIELMEDLDNGKP 209
           C+PCLG+GYVQKITARKDI +ME+LDNGKP
Sbjct: 181 CVPCLGIGYVQKITARKDIAVMEELDNGKP 197

[Close]

BLAST of Carg08160 vs. TrEMBL
Match: tr|A0A2P5CQR3|A0A2P5CQR3_9ROSA (Protein disulfide-isomerase SCO OS=Trema orientalis OX=63057 GN=TorRG33x02_276220 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.3e-65
Identity = 132/205 (64.39%), Postives = 150/205 (73.17%), Query Frame = 0


Query: 1   MFAVNPTSLFF-PSNPTATRQQSISLSPSFRRSCAAAGDASVGPSFSRLFNFPSVSATDA 60
           MFA NP+SLF   +NP     + +          +AAGD   GP+F RL  +P V+    
Sbjct: 1   MFASNPSSLFLSATNP----NRLLPXXXXXXXXASAAGDIPAGPAFPRLVQYPFVADVAG 60

Query: 61  TGGFRLGQEYDGGASSGSVDGVGRSGSGNGSVKANAMEKKWSRDRESYLVDSSEVLPLPM 120
             G R+G + DGGA    +DG  R G  NG VKANA E+KWSR  ESYL D  + LPLPM
Sbjct: 61  GAGARIGIDSDGGA---PLDGAARRGVSNGGVKANAKERKWSRSGESYLADDGDPLPLPM 120

Query: 121 TYPDSSPVTPEEIDRRLQCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGREITCKC 180
           TYPDSSPV PEEIDRRL+CDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRG+E+ CKC
Sbjct: 121 TYPDSSPVPPEEIDRRLRCDPQVEDCKEVVYEWTGKCRSCQGSGFVSYYNKRGKEVICKC 180

Query: 181 IPCLGVGYVQKITARKDIELMEDLD 205
           IPCLG+GYVQKITARKDIE+MEDLD
Sbjct: 181 IPCLGIGYVQKITARKDIEVMEDLD 198

The following BLAST results are available for this feature:

BLAST of Carg08160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941608.1	1.4e-114	100.00	protein disulfide-isomerase SCO2 [Cucurbita moschata]	[more]
XP_023517721.1	1.5e-113	99.04	protein disulfide-isomerase SCO2 [Cucurbita pepo subsp. pepo]	[more]
XP_022982746.1	1.9e-108	95.69	protein disulfide-isomerase SCO2 [Cucurbita maxima]	[more]
XP_022149147.1	1.6e-99	87.08	protein disulfide-isomerase SCO2 [Momordica charantia]	[more]
XP_004140700.2	5.8e-81	75.94	PREDICTED: protein disulfide-isomerase SCO2 [Cucumis sativus] >KGN57535.1 hypoth...	[more]

BLAST of Carg08160 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19220.1	9.4e-49	55.56	protein disulfide isomerases	[more]

BLAST of Carg08160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93YN0\|SCO2_ARATH	1.7e-47	55.56	Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana OX=3702 GN=SCO2 PE=1 SV...	[more]

BLAST of Carg08160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6G9\|A0A0A0L6G9_CUCSA	3.9e-81	75.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207360 PE=4 SV=1	[more]
tr\|A0A1S3C370\|A0A1S3C370_CUCME	5.0e-81	77.07	protein disulfide-isomerase SCO2 OS=Cucumis melo OX=3656 GN=LOC103496158 PE=4 SV...	[more]
tr\|A0A2I4DPR7\|A0A2I4DPR7_9ROSI	4.1e-67	65.71	protein disulfide-isomerase SCO2-like isoform X1 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A9PJQ1\|A9PJQ1_9ROSI	1.6e-66	64.76	Uncharacterized protein OS=Populus trichocarpa x Populus deltoides OX=3695 PE=2 ...	[more]
tr\|A0A2P5CQR3\|A0A2P5CQR3_9ROSA	2.3e-65	64.39	Protein disulfide-isomerase SCO OS=Trema orientalis OX=63057 GN=TorRG33x02_27622...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037477	SCO2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08160-RA	Carg08160-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..97
IPR037477	Protein disulfide-isomerase SCO2	PANTHER	PTHR36035	FAMILY NOT NAMED	coord: 4..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08160	Cla013067	Watermelon (97103) v1	carwmB0370
Carg08160	MELO3C019509	Melon (DHL92) v3.5.1	carmeB0379
Carg08160	ClCG05G010000	Watermelon (Charleston Gray)	carwcgB0369
Carg08160	CmaCh04G004890	Cucurbita maxima (Rimu)	carcmaB0529
Carg08160	CmoCh04G005260	Cucurbita moschata (Rifu)	carcmoB0514
Carg08160	Cp4.1LG01g02250	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08160	Cla97C05G092410	Watermelon (97103) v2	carwmbB0395
Carg08160	Bhi01G001256	Wax gourd	carwgoB0458

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08160	Wax gourd	carwgoB0459
Carg08160	Silver-seed gourd	carcarB244
Carg08160	Silver-seed gourd	carcarB403
Carg08160	Cucumber (Gy14) v2	carcgybB0380
Carg08160	Cucumber (Gy14) v2	carcgybB0388
Carg08160	Cucumber (Gy14) v2	carcgybB0389
Carg08160	Cucumber (Gy14) v1	carcgyB0433
Carg08160	Cucumber (Gy14) v1	carcgyB0434
Carg08160	Cucumber (Gy14) v1	carcgyB0436
Carg08160	Cucurbita maxima (Rimu)	carcmaB0528
Carg08160	Cucurbita maxima (Rimu)	carcmaB0525
Carg08160	Cucurbita maxima (Rimu)	carcmaB0526
Carg08160	Cucurbita moschata (Rifu)	carcmoB0508
Carg08160	Cucurbita moschata (Rifu)	carcmoB0509
Carg08160	Cucurbita moschata (Rifu)	carcmoB0512
Carg08160	Cucurbita moschata (Rifu)	carcmoB0516
Carg08160	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08160	Cucurbita pepo (Zucchini)	carcpeB0529
Carg08160	Wild cucumber (PI 183967)	carcpiB0405
Carg08160	Wild cucumber (PI 183967)	carcpiB0413
Carg08160	Cucumber (Chinese Long) v2	carcuB0400
Carg08160	Cucumber (Chinese Long) v2	carcuB0409
Carg08160	Cucumber (Chinese Long) v2	carcuB0410
Carg08160	Cucumber (Chinese Long) v3	carcucB0403
Carg08160	Cucumber (Chinese Long) v3	carcucB0412
Carg08160	Bottle gourd (USVL1VR-Ls)	carlsiB342
Carg08160	Bottle gourd (USVL1VR-Ls)	carlsiB346
Carg08160	Melon (DHL92) v3.5.1	carmeB0380
Carg08160	Melon (DHL92) v3.5.1	carmeB0386
Carg08160	Melon (DHL92) v3.6.1	carmedB0384
Carg08160	Melon (DHL92) v3.6.1	carmedB0390
Carg08160	Watermelon (Charleston Gray)	carwcgB0368
Carg08160	Watermelon (Charleston Gray)	carwcgB0370
Carg08160	Watermelon (97103) v1	carwmB0371
Carg08160	Watermelon (97103) v1	carwmB0375
Carg08160	Watermelon (97103) v2	carwmbB0394
Carg08160	Watermelon (97103) v2	carwmbB0396