CmaCh04G003020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleic acid binding protein, putative
Location	Cma_Chr04 : 1493313 .. 1493858 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGAACTCGTCGAGCTATAATTTGGAAGAACACGAAAGTGGGTTATCTTCTTCAACCTCTAATGTTGAAAAAAAAGTAAAACTTTTTGGATTTGAGCTAAACCCATCAAAGAACCATGAACTTGGATCAAGTTCTTGCTTGAATGGCGAAGGCGATGAGAGTGTAAACTCTTCAACAACGGTCTGTTTTGAAAGACCAGAGCCCAAATTTGAGTGCCAATATTGTTTGAAGGAGTTTAGAAATTCGCAAGCTTTGGGAGGCCATCAAAATGCCCACAAGAAAGAGAGGCTGAAGAAGAAGAAGGAGAAGATGGAGCTTCAAGCTACAAATGCTTCCCTCACTTATCTTCTCTACACTCATAATTCTTCGCAGATTAGCTTCAGTCAAAACGGCGCTAAGTTTATCCATTTTGATGGTTCTGTGCCGCCGGCCGACAAGGCTGTCGGTTATGTGTCTTCCTCTTCTTCTTCTTGTTTGCCTGTTTGTAATGATCATAGGCGTTCTTGTAAGTCTTTGGATCTTCAACTTGGTTTCAATTGA

mRNA sequence

ATGGGAAAGAACTCGTCGAGCTATAATTTGGAAGAACACGAAAGTGGGTTATCTTCTTCAACCTCTAATGTTGAAAAAAAAGTAAAACTTTTTGGATTTGAGCTAAACCCATCAAAGAACCATGAACTTGGATCAAGTTCTTGCTTGAATGGCGAAGGCGATGAGAGTGTAAACTCTTCAACAACGGTCTGTTTTGAAAGACCAGAGCCCAAATTTGAGTGCCAATATTGTTTGAAGGAGTTTAGAAATTCGCAAGCTTTGGGAGGCCATCAAAATGCCCACAAGAAAGAGAGGCTGAAGAAGAAGAAGGAGAAGATGGAGCTTCAAGCTACAAATGCTTCCCTCACTTATCTTCTCTACACTCATAATTCTTCGCAGATTAGCTTCAGTCAAAACGGCGCTAAGTTTATCCATTTTGATGGTTCTGTGCCGCCGGCCGACAAGGCTGTCGGTTATGTGTCTTCCTCTTCTTCTTCTTGTTTGCCTGTTTGTAATGATCATAGGCGTTCTTGTAAGTCTTTGGATCTTCAACTTGGTTTCAATTGA

Coding sequence (CDS)

ATGGGAAAGAACTCGTCGAGCTATAATTTGGAAGAACACGAAAGTGGGTTATCTTCTTCAACCTCTAATGTTGAAAAAAAAGTAAAACTTTTTGGATTTGAGCTAAACCCATCAAAGAACCATGAACTTGGATCAAGTTCTTGCTTGAATGGCGAAGGCGATGAGAGTGTAAACTCTTCAACAACGGTCTGTTTTGAAAGACCAGAGCCCAAATTTGAGTGCCAATATTGTTTGAAGGAGTTTAGAAATTCGCAAGCTTTGGGAGGCCATCAAAATGCCCACAAGAAAGAGAGGCTGAAGAAGAAGAAGGAGAAGATGGAGCTTCAAGCTACAAATGCTTCCCTCACTTATCTTCTCTACACTCATAATTCTTCGCAGATTAGCTTCAGTCAAAACGGCGCTAAGTTTATCCATTTTGATGGTTCTGTGCCGCCGGCCGACAAGGCTGTCGGTTATGTGTCTTCCTCTTCTTCTTCTTGTTTGCCTGTTTGTAATGATCATAGGCGTTCTTGTAAGTCTTTGGATCTTCAACTTGGTTTCAATTGA

Protein sequence

MGKNSSSYNLEEHESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCFERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNSSQISFSQNGAKFIHFDGSVPPADKAVGYVSSSSSSCLPVCNDHRRSCKSLDLQLGFN

Homology

[Close]

BLAST of CmaCh04G003020 vs. Swiss-Prot
Match: ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-17
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1


Query: 7   SYNLEEHESGLSSSTSNVEKKVKLFGFEL-NPSKNHELGSSSCLNGEGDESVNSSTTVCF 66
           S N     +G SSS S+ +K +KLFGFEL + S+  E+ ++        ESV+SST    
Sbjct: 2   SINPTMSRTGESSSGSSSDKTIKLFGFELISGSRTPEITTA--------ESVSSSTNTTS 61

Query: 67  ERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNSS 126
                + ECQYC KEF NSQALGGHQNAHKKERLKKK  +++LQA  AS+ Y L  H   
Sbjct: 62  LTVMKRHECQYCGKEFANSQALGGHQNAHKKERLKKK--RLQLQARRASIGYYLTNHQQP 121

Query: 127 QISFSQNGAK---FIHFDGSVPPADKAVGYVSSSSSSCLPVCNDHRRSCKSLDLQLG 180
             +  Q   K   +  F       D+   Y    SS    +   +  +C+ L+ Q G
Sbjct: 122 ITTSFQRQYKTPSYCAFSSMHVNNDQMGVYNEDWSSRSSQINFGNNDTCQDLNEQSG 168

[Close]

BLAST of CmaCh04G003020 vs. Swiss-Prot
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-09
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 19  SSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCFERPEPKFECQYCL 78
           +S S  E+ ++LFGFE   S  HE   S     E +ES+        +  E +F+C YC 
Sbjct: 10  NSFSPKERPIRLFGFEFGAS--HEESESKDNYNENNESIKD------DNKEKRFKCHYCF 69

Query: 79  KEFRNSQALGGHQNAHKKERLKKKKEKMELQA 111
           + F  SQALGGHQNAHK+ER + K+  +   A
Sbjct: 70  RNFPTSQALGGHQNAHKRERQQTKRFNLHSNA 93

[Close]

BLAST of CmaCh04G003020 vs. Swiss-Prot
Match: ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-08
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = 1


Query: 28  VKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCFERPEPKFECQYCLKEFRNSQAL 87
           +KLFG  L  + + +  SS    G G  S +            K+ECQYC +EF NSQAL
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESR-----------KYECQYCCREFANSQAL 67

Query: 88  GGHQNAHKKERLKKKKEKM 107
           GGHQNAHKKER   K+ +M
Sbjct: 68  GGHQNAHKKERQLLKRAQM 75

[Close]

BLAST of CmaCh04G003020 vs. Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 39  KNHELGSSSCLNGEGDESVNSSTT---VCFERPEPKFECQYCLKEFRNSQALGGHQNAHK 98
           KNH+L     L      S +SS+T    C E+P   F C YC ++F +SQALGGHQNAHK
Sbjct: 17  KNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRV-FSCNYCQRKFYSSQALGGHQNAHK 76

Query: 99  KERLKKKKEKMELQATN 113
            ER   KK +   +++N
Sbjct: 77  LERTLAKKSRELFRSSN 92

[Close]

BLAST of CmaCh04G003020 vs. TrEMBL
Match: A0A0A0KVQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603380 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-29
Identity = 113/269 (42.01%), Postives = 128/269 (47.58%), Query Frame = 1


Query: 1   MGKNSSSYNLE-EHESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGD-ESVN 60
           MGK+S   N + E E GL      +EKKVKLFG ELNPS N      +  + +GD ESVN
Sbjct: 2   MGKDSFCCNFDPEKEGGLFGGGCCMEKKVKLFGIELNPSNNF----CNNFHDQGDHESVN 61

Query: 61  SS----TTVCFE------------------------------RPEPKFECQYCLKEFRNS 120
           SS    TTVCF+                              +   KFECQYCLKEF NS
Sbjct: 62  SSTTTATTVCFDQRSSTNQQEQEEDDQEEAADIVVISNNNNNKKATKFECQYCLKEFTNS 121

Query: 121 QALGGHQNAHKKERLKKKKEKMELQATNASLTYLL------------------------- 180
           QALGGHQNAHKKERLKKK  KM+LQA  A+LTY L                         
Sbjct: 122 QALGGHQNAHKKERLKKK--KMQLQARKATLTYYLQSNSNNNNHFLYDYDPNSSSPNSSF 181

Query: 181 -----YTHNSSQISFSQNGAKFIHFDGSVP----------------------PADKAVGY 182
                Y +NSSQISF+QN A  IHFD S+P                      P+   V +
Sbjct: 182 FISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRQPFFTFTPPDMSSRRPSTNPVVF 241

[Close]

BLAST of CmaCh04G003020 vs. TrEMBL
Match: A0A061E6R5_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_010176 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-23
Identity = 76/154 (49.35%), Postives = 96/154 (62.34%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTT---------VC 73
           E+G S + S VEKK++LFGFELNPSKN++    S  + EGDESVNSS+T           
Sbjct: 16  ENGYSPAASCVEKKLRLFGFELNPSKNNDNSLKS--SAEGDESVNSSSTRETPTKEKSST 75

Query: 74  FERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNS 133
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  AS+   L    +
Sbjct: 76  GETDDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASINCYLQPFQN 135

Query: 134 SQISFSQNGAKFIHFDGSVPPADKAVGYVSSSSS 159
           S + FS  G+   ++D S   A +   Y  S  S
Sbjct: 136 S-LGFSYQGSTPWYYDSSCYSAPEITLYEESQIS 164

[Close]

BLAST of CmaCh04G003020 vs. TrEMBL
Match: A0A0D2RHM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G186400 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.6e-23
Identity = 93/226 (41.15%), Postives = 115/226 (50.88%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCF-------- 73
           E+G S +  +VEKK++LFGFELNPS ++  G S  + GEGDESVNSS T+          
Sbjct: 9   ENGYSQAGFSVEKKLRLFGFELNPSNSN--GDSMKVCGEGDESVNSSNTISSTAKEKSSM 68

Query: 74  -ERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLT-YLLYTHN 133
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  ASL  YL    N
Sbjct: 69  AEADDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASLNCYLQPFQN 128

Query: 134 S------------------------SQISFSQNGAKFIHFDGSVPPADKAVGYVSSSSSS 180
           S                        SQISFSQ   +  HF+GS          ++S  S 
Sbjct: 129 SLGFGSPWYYDSPAYATADFTPYEESQISFSQ-FEQDSHFNGS------HASNLNSLPSE 188

[Close]

BLAST of CmaCh04G003020 vs. TrEMBL
Match: I3SI07_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.6e-23
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1


Query: 23  NVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCF-------------ERPE 82
           +VEK+++LFGFELNP+KN+  G +   N EGDESVNSS ++               ++ E
Sbjct: 9   SVEKRLRLFGFELNPTKNNNEGVAKESN-EGDESVNSSNSISSGGDKIVQEKNSSKDQDE 68

Query: 83  PKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNSSQISF 140
            KFECQYC KEF NSQALGGHQNAHKKERLKKK  +++LQA  AS+ Y L     +   F
Sbjct: 69  RKFECQYCFKEFANSQALGGHQNAHKKERLKKK--RLQLQARKASINYYLQPFQKNHHGF 128

[Close]

BLAST of CmaCh04G003020 vs. TrEMBL
Match: A0A0A1EL03_GOSHI (C2H2 zinc finger protein 5 OS=Gossypium hirsutum GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 68/121 (56.20%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVC--------- 73
           E+G S +  +VEKK++LFGFELNPS ++  G S  + GEGDESVNSS T+          
Sbjct: 9   ENGYSQAGFSVEKKLRLFGFELNPSNSN--GDSMKVCGEGDESVNSSNTISSTAKEKSSM 68

Query: 74  FERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNS 126
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  ASL   L    S
Sbjct: 69  VEADDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASLNCYLQPFQS 125

[Close]

BLAST of CmaCh04G003020 vs. TAIR10
Match: AT1G10480.1 (AT1G10480.1 zinc finger protein 5)

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-18
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1


Query: 7   SYNLEEHESGLSSSTSNVEKKVKLFGFEL-NPSKNHELGSSSCLNGEGDESVNSSTTVCF 66
           S N     +G SSS S+ +K +KLFGFEL + S+  E+ ++        ESV+SST    
Sbjct: 2   SINPTMSRTGESSSGSSSDKTIKLFGFELISGSRTPEITTA--------ESVSSSTNTTS 61

Query: 67  ERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNSS 126
                + ECQYC KEF NSQALGGHQNAHKKERLKKK  +++LQA  AS+ Y L  H   
Sbjct: 62  LTVMKRHECQYCGKEFANSQALGGHQNAHKKERLKKK--RLQLQARRASIGYYLTNHQQP 121

Query: 127 QISFSQNGAK---FIHFDGSVPPADKAVGYVSSSSSSCLPVCNDHRRSCKSLDLQLG 180
             +  Q   K   +  F       D+   Y    SS    +   +  +C+ L+ Q G
Sbjct: 122 ITTSFQRQYKTPSYCAFSSMHVNNDQMGVYNEDWSSRSSQINFGNNDTCQDLNEQSG 168

[Close]

BLAST of CmaCh04G003020 vs. TAIR10
Match: AT5G06650.1 (AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 19  SSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCFERPEPKFECQYCL 78
           +S S  E+ ++LFGFE   S  HE   S     E +ES+        +  E +F+C YC 
Sbjct: 10  NSFSPKERPIRLFGFEFGAS--HEESESKDNYNENNESIKD------DNKEKRFKCHYCF 69

Query: 79  KEFRNSQALGGHQNAHKKERLKKKKEKMELQA 111
           + F  SQALGGHQNAHK+ER + K+  +   A
Sbjct: 70  RNFPTSQALGGHQNAHKRERQQTKRFNLHSNA 93

[Close]

BLAST of CmaCh04G003020 vs. TAIR10
Match: AT1G67030.1 (AT1G67030.1 zinc finger protein 6)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = 1


Query: 28  VKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCFERPEPKFECQYCLKEFRNSQAL 87
           +KLFG  L  + + +  SS    G G  S +            K+ECQYC +EF NSQAL
Sbjct: 8   LKLFGINLLETTSVQNQSSEPRPGSGSGSESR-----------KYECQYCCREFANSQAL 67

Query: 88  GGHQNAHKKERLKKKKEKM 107
           GGHQNAHKKER   K+ +M
Sbjct: 68  GGHQNAHKKERQLLKRAQM 75

[Close]

BLAST of CmaCh04G003020 vs. TAIR10
Match: AT1G68360.1 (AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-09
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = 1


Query: 17  LSSSTSNVEKKVKLFGFELN------------------PSKNHELGSSSCLNGEGDESVN 76
           L  S+     ++KLFGF ++                  P +      SS  +G G  S  
Sbjct: 4   LDFSSKTTTSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPERGEFPAGSSGRSGGGVRSRG 63

Query: 77  SSTTVCFERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQAT-NASLTY 118
                     E K+ECQYC +EF NSQALGGHQNAHKKER + K  + +LQAT NA+  +
Sbjct: 64  GGGG----GGERKYECQYCCREFGNSQALGGHQNAHKKERQQLK--RAQLQATRNAAANF 117

[Close]

BLAST of CmaCh04G003020 vs. TAIR10
Match: AT5G57520.1 (AT5G57520.1 zinc finger protein 2)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 39  KNHELGSSSCLNGEGDESVNSSTT---VCFERPEPKFECQYCLKEFRNSQALGGHQNAHK 98
           KNH+L     L      S +SS+T    C E+P   F C YC ++F +SQALGGHQNAHK
Sbjct: 17  KNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRV-FSCNYCQRKFYSSQALGGHQNAHK 76

Query: 99  KERLKKKKEKMELQATN 113
            ER   KK +   +++N
Sbjct: 77  LERTLAKKSRELFRSSN 92

[Close]

BLAST of CmaCh04G003020 vs. NCBI nr
Match: gi|700196664|gb|KGN51841.1| (hypothetical protein Csa_5G603380 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 113/269 (42.01%), Postives = 128/269 (47.58%), Query Frame = 1


Query: 1   MGKNSSSYNLE-EHESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGD-ESVN 60
           MGK+S   N + E E GL      +EKKVKLFG ELNPS N      +  + +GD ESVN
Sbjct: 2   MGKDSFCCNFDPEKEGGLFGGGCCMEKKVKLFGIELNPSNNF----CNNFHDQGDHESVN 61

Query: 61  SS----TTVCFE------------------------------RPEPKFECQYCLKEFRNS 120
           SS    TTVCF+                              +   KFECQYCLKEF NS
Sbjct: 62  SSTTTATTVCFDQRSSTNQQEQEEDDQEEAADIVVISNNNNNKKATKFECQYCLKEFTNS 121

Query: 121 QALGGHQNAHKKERLKKKKEKMELQATNASLTYLL------------------------- 180
           QALGGHQNAHKKERLKKK  KM+LQA  A+LTY L                         
Sbjct: 122 QALGGHQNAHKKERLKKK--KMQLQARKATLTYYLQSNSNNNNHFLYDYDPNSSSPNSSF 181

Query: 181 -----YTHNSSQISFSQNGAKFIHFDGSVP----------------------PADKAVGY 182
                Y +NSSQISF+QN A  IHFD S+P                      P+   V +
Sbjct: 182 FISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRQPFFTFTPPDMSSRRPSTNPVVF 241

[Close]

BLAST of CmaCh04G003020 vs. NCBI nr
Match: gi|590694034|ref|XP_007044496.1| (C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-23
Identity = 76/154 (49.35%), Postives = 96/154 (62.34%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTT---------VC 73
           E+G S + S VEKK++LFGFELNPSKN++    S  + EGDESVNSS+T           
Sbjct: 16  ENGYSPAASCVEKKLRLFGFELNPSKNNDNSLKS--SAEGDESVNSSSTRETPTKEKSST 75

Query: 74  FERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNS 133
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  AS+   L    +
Sbjct: 76  GETDDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASINCYLQPFQN 135

Query: 134 SQISFSQNGAKFIHFDGSVPPADKAVGYVSSSSS 159
           S + FS  G+   ++D S   A +   Y  S  S
Sbjct: 136 S-LGFSYQGSTPWYYDSSCYSAPEITLYEESQIS 164

[Close]

BLAST of CmaCh04G003020 vs. NCBI nr
Match: gi|823159231|ref|XP_012479446.1| (PREDICTED: zinc finger protein 5-like [Gossypium raimondii])

HSP 1 Score: 115.5 bits (288), Expect = 9.4e-23
Identity = 93/226 (41.15%), Postives = 115/226 (50.88%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCF-------- 73
           E+G S +  +VEKK++LFGFELNPS ++  G S  + GEGDESVNSS T+          
Sbjct: 9   ENGYSQAGFSVEKKLRLFGFELNPSNSN--GDSMKVCGEGDESVNSSNTISSTAKEKSSM 68

Query: 74  -ERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLT-YLLYTHN 133
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  ASL  YL    N
Sbjct: 69  AEADDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASLNCYLQPFQN 128

Query: 134 S------------------------SQISFSQNGAKFIHFDGSVPPADKAVGYVSSSSSS 180
           S                        SQISFSQ   +  HF+GS          ++S  S 
Sbjct: 129 SLGFGSPWYYDSPAYATADFTPYEESQISFSQ-FEQDSHFNGS------HASNLNSLPSE 188

[Close]

BLAST of CmaCh04G003020 vs. NCBI nr
Match: gi|388503666|gb|AFK39899.1| (unknown [Medicago truncatula])

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 1


Query: 23  NVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVCF-------------ERPE 82
           +VEK+++LFGFELNP+KN+  G +   N EGDESVNSS ++               ++ E
Sbjct: 9   SVEKRLRLFGFELNPTKNNNEGVAKESN-EGDESVNSSNSISSGGDKIVQEKNSSKDQDE 68

Query: 83  PKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNSSQISF 140
            KFECQYC KEF NSQALGGHQNAHKKERLKKK  +++LQA  AS+ Y L     +   F
Sbjct: 69  RKFECQYCFKEFANSQALGGHQNAHKKERLKKK--RLQLQARKASINYYLQPFQKNHHGF 128

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BLAST of CmaCh04G003020 vs. NCBI nr
Match: gi|725539088|gb|AIY30133.1| (C2H2 zinc finger protein 5 [Gossypium hirsutum])

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 68/121 (56.20%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 14  ESGLSSSTSNVEKKVKLFGFELNPSKNHELGSSSCLNGEGDESVNSSTTVC--------- 73
           E+G S +  +VEKK++LFGFELNPS ++  G S  + GEGDESVNSS T+          
Sbjct: 9   ENGYSQAGFSVEKKLRLFGFELNPSNSN--GDSMKVCGEGDESVNSSNTISSTAKEKSSM 68

Query: 74  FERPEPKFECQYCLKEFRNSQALGGHQNAHKKERLKKKKEKMELQATNASLTYLLYTHNS 126
            E  + KFECQYC KEF NSQALGGHQNAHKKER+KKK  +++LQA  ASL   L    S
Sbjct: 69  VEADDKKFECQYCFKEFANSQALGGHQNAHKKERMKKK--RLQLQAKRASLNCYLQPFQS 125

The following BLAST results are available for this feature:

BLAST of CmaCh04G003020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP5_ARATH	5.9e-17	39.55	Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1	[more]
GIS2_ARATH	4.5e-09	40.22	Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1	[more]
ZFP6_ARATH	5.0e-08	45.57	Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1	[more]
ZFP2_ARATH	1.9e-07	44.16	Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1	[more]

BLAST of CmaCh04G003020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVQ6_CUCSA	4.7e-29	42.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603380 PE=4 SV=1	[more]
A0A061E6R5_THECC	1.7e-23	49.35	C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=T...	[more]
A0A0D2RHM9_GOSRA	6.6e-23	41.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G186400 PE=4 SV=1	[more]
I3SI07_MEDTR	8.6e-23	50.77	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A0A1EL03_GOSHI	1.9e-22	56.20	C2H2 zinc finger protein 5 OS=Gossypium hirsutum GN=ZFP5 PE=2 SV=1	[more]

BLAST of CmaCh04G003020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10480.1	3.3e-18	39.55	zinc finger protein 5	[more]
AT5G06650.1	2.6e-10	40.22	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G67030.1	2.8e-09	45.57	zinc finger protein 6	[more]
AT1G68360.1	8.2e-09	37.50	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G57520.1	1.1e-08	44.16	zinc finger protein 2	[more]

BLAST of CmaCh04G003020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196664\|gb\|KGN51841.1\|	6.7e-29	42.01	hypothetical protein Csa_5G603380 [Cucumis sativus]	[more]
gi\|590694034\|ref\|XP_007044496.1\|	2.5e-23	49.35	C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]	[more]
gi\|823159231\|ref\|XP_012479446.1\|	9.4e-23	41.15	PREDICTED: zinc finger protein 5-like [Gossypium raimondii]	[more]
gi\|388503666\|gb\|AFK39899.1\|	1.2e-22	50.77	unknown [Medicago truncatula]	[more]
gi\|725539088\|gb\|AIY30133.1\|	2.7e-22	56.20	C2H2 zinc finger protein 5 [Gossypium hirsutum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0044699	single-organism process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003020.1	CmaCh04G003020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 72..96 score: 3.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 74..94 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 72..99 score: 11
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 71..98 score: 6.
None	No IPR available	unknown	Coil	Coil	coord: 96..116 scor
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 69..99 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003020	Cucsa.285730	Cucumber (Gy14) v1	cgycmaB0805
CmaCh04G003020	Cla010119	Watermelon (97103) v1	cmawmB704
CmaCh04G003020	Csa5G603380	Cucumber (Chinese Long) v2	cmacuB729
CmaCh04G003020	MELO3C012028	Melon (DHL92) v3.5.1	cmameB657
CmaCh04G003020	ClCG05G024980	Watermelon (Charleston Gray)	cmawcgB660
CmaCh04G003020	CSPI05G23030	Wild cucumber (PI 183967)	cmacpiB736
CmaCh04G003020	CmoCh04G016710	Cucurbita moschata (Rifu)	cmacmoB733
CmaCh04G003020	CmoCh04G003150	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003020	Lsi04G005090	Bottle gourd (USVL1VR-Ls)	cmalsiB681
CmaCh04G003020	Cp4.1LG01g03880	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G003020	Cp4.1LG01g12960	Cucurbita pepo (Zucchini)	cmacpeB726
CmaCh04G003020	MELO3C012028.2	Melon (DHL92) v3.6.1	cmamedB744
CmaCh04G003020	CsaV3_5G031910	Cucumber (Chinese Long) v3	cmacucB0866
CmaCh04G003020	Cla97C05G107100	Watermelon (97103) v2	cmawmbB764
CmaCh04G003020	CsGy5G022500	Cucumber (Gy14) v2	cgybcmaB653
CmaCh04G003020	Carg01757	Silver-seed gourd	carcmaB1172
CmaCh04G003020	Carg07979	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G003020	CmaCh04G015970	Cucurbita maxima (Rimu)	cmacmaB532

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003020	Cucumber (Chinese Long) v3	cmacucB0892
CmaCh04G003020	Wax gourd	cmawgoB0907
CmaCh04G003020	Wild cucumber (PI 183967)	cmacpiB763
CmaCh04G003020	Cucumber (Chinese Long) v2	cmacuB754