CmaCh04G002770 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G002770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 1372829 .. 1373176 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCCGAACGAATCAGTGTCAATAGTTTTCCGACTATTTACACCATCGATCCAACGATCACAGGCCTTGCAGTTGAATTGTTAGAACTGTCAGCAACAACCACAAGATCAAACCAAAACGAGCATGCTATCCACATTGTGCCAACTTCAGAGGCTGTATCAATGTCTGCATCATGTTGTTCTAAGAAAATGTTGTGCTGGAATTTTCGTGCTACAGACAACGCGAAGCTAATGCGAGCATTGAAAGATCTGATTCAATTACACAAGCCATCGATTGTGCTGATCTTTGGCACCAAGATCAGTGGTGCTGATGCAGATCATGTTGTTCGGGAGCTCGCTTTCTGA

mRNA sequence

ATGACATCCGAACGAATCAGTGTCAATAGTTTTCCGACTATTTACACCATCGATCCAACGATCACAGGCCTTGCAGTTGAATTGTTAGAACTGTCAGCAACAACCACAAGATCAAACCAAAACGAGCATGCTATCCACATTGTGCCAACTTCAGAGGCTGTATCAATGTCTGCATCATGTTGTTCTAAGAAAATGTTGTGCTGGAATTTTCGTGCTACAGACAACGCGAAGCTAATGCGAGCATTGAAAGATCTGATTCAATTACACAAGCCATCGATTGTGCTGATCTTTGGCACCAAGATCAGTGGTGCTGATGCAGATCATGTTGTTCGGGAGCTCGCTTTCTGA

Coding sequence (CDS)

ATGACATCCGAACGAATCAGTGTCAATAGTTTTCCGACTATTTACACCATCGATCCAACGATCACAGGCCTTGCAGTTGAATTGTTAGAACTGTCAGCAACAACCACAAGATCAAACCAAAACGAGCATGCTATCCACATTGTGCCAACTTCAGAGGCTGTATCAATGTCTGCATCATGTTGTTCTAAGAAAATGTTGTGCTGGAATTTTCGTGCTACAGACAACGCGAAGCTAATGCGAGCATTGAAAGATCTGATTCAATTACACAAGCCATCGATTGTGCTGATCTTTGGCACCAAGATCAGTGGTGCTGATGCAGATCATGTTGTTCGGGAGCTCGCTTTCTGA

Protein sequence

MTSERISVNSFPTIYTIDPTITGLAVELLELSATTTRSNQNEHAIHIVPTSEAVSMSASCCSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAF

Homology

[Close]

BLAST of CmaCh04G002770 vs. TrEMBL
Match: A0A0A0KLB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175790 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.3e-20
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 3   SERISVNSFPTIYTIDPT-ITGLAVELLELSATTTRSNQNEHAIHIVPTSEA-------- 62
           S+ I+ +SFPT+YTIDP  IT L + L E+             I +VPT +         
Sbjct: 455 SKVINDSSFPTVYTIDPKKITSLNIALSEVQT-----------IELVPTMKGGDEGGVGS 514

Query: 63  -VSMSASCCSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRE 116
            V   +  C+KK+L W F   DNAKLMRALKDLIQLH+PSIVLIFG KISG D D V+RE
Sbjct: 515 EVESGSEPCAKKILVWKFHVMDNAKLMRALKDLIQLHEPSIVLIFGNKISGVDTDKVMRE 566

[Close]

BLAST of CmaCh04G002770 vs. TrEMBL
Match: A0A0A0KRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175800 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-19
Identity = 64/118 (54.24%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 8   VNSFPTIYTIDPTITGLAVELLELSATTTRSNQNEHAIHIVPTS------EAVSMSASC- 67
           V+S+PT+YTI+PT   L +E  E+  T T SNQ ++AI  V  S      E  S +AS  
Sbjct: 458 VDSWPTVYTINPTTMSLGIEFSEVP-TMTGSNQTQYAISFVLNSGRENDNEVDSKAASSV 517

Query: 68  ---CSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAF 116
              CSK MLC NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF
Sbjct: 518 PPWCSKTMLCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAF 574

[Close]

BLAST of CmaCh04G002770 vs. TrEMBL
Match: A5AT31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006250 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 4   ERISVNSFPTIYTIDPTITGLAVELLELSATTTRSNQNE---------HAIHIVPTSEAV 63
           + +S  S PT+++ID  I+ + + +      T ++N +          H +H +P  +A 
Sbjct: 593 QELSTESSPTVFSIDSAISDIEISVSISPLPTGKANHHSISFSPSKTNHNMHPLPKGQAG 652

Query: 64  SMSASCCS------KKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADH 116
           +      +      KK+LCWN R     K MRA+KDLI+LH+PSIV++   KISG DAD 
Sbjct: 653 TYQNVSKAIPEPHPKKLLCWNCRGAGELKFMRAIKDLIKLHEPSIVVLLEPKISGGDADQ 712

[Close]

BLAST of CmaCh04G002770 vs. TrEMBL
Match: F6HHZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00420 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 4   ERISVNSFPTIYTIDPTITGLAVELLELSATTTRSNQNE---------HAIHIVPTSEAV 63
           + +S  S PT+++ID  I+ + + +      T ++N +          H +H +P  +A 
Sbjct: 214 QELSTESSPTVFSIDSAISDIEISVSISPLPTGKANHHSISFSPSKTNHNMHPLPKGQAG 273

Query: 64  SMSASCCS------KKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADH 116
           +      +      KK+LCWN R     K MRA+KDLI+LH+PSIV++   KISG DAD 
Sbjct: 274 TYQNVSKAIPEPHPKKLLCWNCRGAGELKFMRAIKDLIKLHEPSIVVLLEPKISGGDADQ 333

[Close]

BLAST of CmaCh04G002770 vs. TrEMBL
Match: A0A0A0KB07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124230 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-12
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 51  SEAVSMSASCCSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVV 110
           S+A S     CSK MLC NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VV
Sbjct: 45  SKAASSMLPWCSKTMLCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVV 104

Query: 111 RELAF 116
           RE AF
Sbjct: 105 REFAF 109

[Close]

BLAST of CmaCh04G002770 vs. NCBI nr
Match: gi|778700726|ref|XP_011654905.1| (PREDICTED: uncharacterized protein LOC105435457 isoform X1 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-20
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 3   SERISVNSFPTIYTIDPT-ITGLAVELLELSATTTRSNQNEHAIHIVPTSEA-------- 62
           S+ I+ +SFPT+YTIDP  IT L + L E+             I +VPT +         
Sbjct: 445 SKVINDSSFPTVYTIDPKKITSLNIALSEVQT-----------IELVPTMKGGDEGGVGS 504

Query: 63  -VSMSASCCSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRE 116
            V   +  C+KK+L W F   DNAKLMRALKDLIQLH+PSIVLIFG KISG D D V+RE
Sbjct: 505 EVESGSEPCAKKILVWKFHVMDNAKLMRALKDLIQLHEPSIVLIFGNKISGVDTDKVMRE 556

[Close]

BLAST of CmaCh04G002770 vs. NCBI nr
Match: gi|700195278|gb|KGN50455.1| (hypothetical protein Csa_5G175790 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-20
Identity = 63/123 (51.22%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 3   SERISVNSFPTIYTIDPT-ITGLAVELLELSATTTRSNQNEHAIHIVPTSEA-------- 62
           S+ I+ +SFPT+YTIDP  IT L + L E+             I +VPT +         
Sbjct: 455 SKVINDSSFPTVYTIDPKKITSLNIALSEVQT-----------IELVPTMKGGDEGGVGS 514

Query: 63  -VSMSASCCSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRE 116
            V   +  C+KK+L W F   DNAKLMRALKDLIQLH+PSIVLIFG KISG D D V+RE
Sbjct: 515 EVESGSEPCAKKILVWKFHVMDNAKLMRALKDLIQLHEPSIVLIFGNKISGVDTDKVMRE 566

[Close]

BLAST of CmaCh04G002770 vs. NCBI nr
Match: gi|700195279|gb|KGN50456.1| (hypothetical protein Csa_5G175800 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 8.9e-19
Identity = 64/118 (54.24%), Postives = 76/118 (64.41%), Query Frame = 1


Query: 8   VNSFPTIYTIDPTITGLAVELLELSATTTRSNQNEHAIHIVPTS------EAVSMSASC- 67
           V+S+PT+YTI+PT   L +E  E+  T T SNQ ++AI  V  S      E  S +AS  
Sbjct: 458 VDSWPTVYTINPTTMSLGIEFSEVP-TMTGSNQTQYAISFVLNSGRENDNEVDSKAASSV 517

Query: 68  ---CSKKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAF 116
              CSK MLC NF   D    +RALKDLI LHKPSIVLIFG+KIS +DAD VVRE AF
Sbjct: 518 PPWCSKTMLCCNFDWKDAELQIRALKDLIGLHKPSIVLIFGSKISSSDADEVVREFAF 574

[Close]

BLAST of CmaCh04G002770 vs. NCBI nr
Match: gi|147805812|emb|CAN60544.1| (hypothetical protein VITISV_006250 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 4   ERISVNSFPTIYTIDPTITGLAVELLELSATTTRSNQNE---------HAIHIVPTSEAV 63
           + +S  S PT+++ID  I+ + + +      T ++N +          H +H +P  +A 
Sbjct: 593 QELSTESSPTVFSIDSAISDIEISVSISPLPTGKANHHSISFSPSKTNHNMHPLPKGQAG 652

Query: 64  SMSASCCS------KKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADH 116
           +      +      KK+LCWN R     K MRA+KDLI+LH+PSIV++   KISG DAD 
Sbjct: 653 TYQNVSKAIPEPHPKKLLCWNCRGAGELKFMRAIKDLIKLHEPSIVVLLEPKISGGDADQ 712

[Close]

BLAST of CmaCh04G002770 vs. NCBI nr
Match: gi|731414733|ref|XP_010659263.1| (PREDICTED: uncharacterized protein LOC104881299 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1


Query: 4   ERISVNSFPTIYTIDPTITGLAVELLELSATTTRSNQNE---------HAIHIVPTSEAV 63
           + +S  S PT+++ID  I+ + + +      T ++N +          H +H +P  +A 
Sbjct: 593 QELSTESSPTVFSIDSAISDIEISVSISPLPTGKANHHSISFSPSKTNHNMHPLPKGQAG 652

Query: 64  SMSASCCS------KKMLCWNFRATDNAKLMRALKDLIQLHKPSIVLIFGTKISGADADH 116
           +      +      KK+LCWN R     K MRA+KDLI+LH+PSIV++   KISG DAD 
Sbjct: 653 TYQNVSKAIPEPHPKKLLCWNCRGAGELKFMRAIKDLIKLHEPSIVVLLEPKISGGDADQ 712

The following BLAST results are available for this feature:

BLAST of CmaCh04G002770 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G002770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLB0_CUCSA	3.3e-20	51.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175790 PE=4 SV=1	[more]
A0A0A0KRY0_CUCSA	6.2e-19	54.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175800 PE=4 SV=1	[more]
A5AT31_VITVI	1.9e-12	34.65	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006250 PE=4 SV=1	[more]
F6HHZ1_VITVI	1.9e-12	34.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00420 PE=4 SV=...	[more]
A0A0A0KB07_CUCSA	7.4e-12	64.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124230 PE=4 SV=1	[more]

BLAST of CmaCh04G002770 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G002770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778700726\|ref\|XP_011654905.1\|	4.7e-20	51.22	PREDICTED: uncharacterized protein LOC105435457 isoform X1 [Cucumis sativus]	[more]
gi\|700195278\|gb\|KGN50455.1\|	4.7e-20	51.22	hypothetical protein Csa_5G175790 [Cucumis sativus]	[more]
gi\|700195279\|gb\|KGN50456.1\|	8.9e-19	54.24	hypothetical protein Csa_5G175800 [Cucumis sativus]	[more]
gi\|147805812\|emb\|CAN60544.1\|	2.8e-12	34.65	hypothetical protein VITISV_006250 [Vitis vinifera]	[more]
gi\|731414733\|ref\|XP_010659263.1\|	2.8e-12	34.65	PREDICTED: uncharacterized protein LOC104881299 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002770.1	CmaCh04G002770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G002770	Cucsa.166090	Cucumber (Gy14) v1	cgycmaB0471
CmaCh04G002770	Cla020064	Watermelon (97103) v1	cmawmB724
CmaCh04G002770	Csa5G175780	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G002770	MELO3C011742	Melon (DHL92) v3.5.1	cmameB654
CmaCh04G002770	CSPI05G08700	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G002770	CmoCh04G002850	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G002770	Lsi04G008010	Bottle gourd (USVL1VR-Ls)	cmalsiB677
CmaCh04G002770	Cp4.1LG01g10090	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G002770	Cp4.1LG01g04350	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G002770	MELO3C034057.2	Melon (DHL92) v3.6.1	cmamedB738
CmaCh04G002770	CsaV3_5G006160	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G002770	Cla97C02G039690	Watermelon (97103) v2	cmawmbB741
CmaCh04G002770	Bhi07G000935	Wax gourd	cmawgoB0910
CmaCh04G002770	Bhi07G000893	Wax gourd	cmawgoB0894
CmaCh04G002770	CsGy5G006080	Cucumber (Gy14) v2	cgybcmaB674
CmaCh04G002770	Carg02058	Silver-seed gourd	carcmaB1171
CmaCh04G002770	Carg25678	Silver-seed gourd	carcmaB1179

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G002770	CmaCh04G012490	Cucurbita maxima (Rimu)	cmacmaB531

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G002770	Cucumber (Chinese Long) v3	cmacucB0850
CmaCh04G002770	Cucumber (Chinese Long) v3	cmacucB0892
CmaCh04G002770	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G002770	Wild cucumber (PI 183967)	cmacpiB763
CmaCh04G002770	Cucumber (Chinese Long) v2	cmacuB754
CmaCh04G002770	Watermelon (Charleston Gray)	cmawcgB642
CmaCh04G002770	Watermelon (97103) v1	cmawmB650