CmaCh04G000970 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G000970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionABC1 family kinase
LocationCma_Chr04 : 480181 .. 484045 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTCGACCTTCCCCCTCCTTGCAAAACCTGTACCGATTCAACCCCTTCGAAATCCCACCACCTGAAAGGAAAAAAACAGAAGATGATGGGCAAGGATAAATGTGGCGTTTGGAGCCGGAAATGGCGGTGATCCGGTCGGAAGGGGGCGGAGGGAGGTGGGTCGCCGGGGGAATTTGGGGAAGGAAAAAGGAAACGAAGAAATAGGTTGGGAAAAAAAAATGGAGAATTGAATGTAAAATGAAACGTAGAGAGAGGCAAATAGTGGAGGAGAAGGGAGTGCGCGTGGAAGCCGAGTCGTATCGTATCGTATCGTATCGTATCGTATCATATCGTATCGTATTAGGCACAAAAATGCGACTAATTCAGCTCAGTCGGCTCGGCGACACAATACGAACCAAGCCGACCGTTGAACCGTTGGGTCCTCCTCTTAAATATTATTATTTTTTAATTTACTCTTATAATAATAATAATAAAAGTAATTGAAAACTAAATAAAAACAATTTAATTGCCCGCCATAGCTATCAAGAATTCCCACCATGCCTTCAGCCCCAACGCCTTTCGTCTCCTTGTTCGTTACACTCCAGCTCAGGACCTCTTCGATTCCCGCCTTCAAGGTGAAGTTGCCATCCTCTTCTTCTTCTTGTTCTTCTTTTTCTTATTCTTCTCTAATTGCGATTGCCTTTTCGGAAATGTTATGGAGTTTGATTGTTCGAACTTTCTGCTTCGGAAGCGATAGCGTCTGTTGAAAACTTCATTGCATCTGCCGATTAGAGTGCGGAACAATTCGGATTAAATTAAGCATACTGACTTTTTGTTTTTCCTCTAGATAATCGTGTGTATGTTTAGGGAAGAAGGAGAAGGAAAGTGCTTCTTCTTTACTCCTGAAGTTAACAGCAACTTTTTCCTACCTACTCAATAAAGAAGGAAATTGGGAACTTTTCCCCCTTTTCGAAATCACTTTAACCAGGACTCACGGCCAAGAACTTGTAATTTAATCGGCAACTTTTTCCTACCTAATGAAAGTGTGTTTGGATTTCATCTGTTTGACTCCATCCTCGTCAAAATCTAACAAAATGCCTACGTAATTCTCAGCTAGCACGGAAAATCTGCCTAAACTGTTGGAAGACATTATGCAGACTTTCATTGTGAGATTCAACACCAGTTGGAGAGGGAAACAAAGTATTTCTTACACGGGTATGGAAATCTCTGTTTAGTAAACGCGTTTTAAAATTTTTGAGGAGAAACCCAAAGAGCATGCTATCTACTAGCCTTGGTCTTGGGCCATTGCATCCATAAACACAGGTCCAAGTGGTCCCAAGCCTAGTTCAAGCATTTATTGGAGTTGGTTGAGAGTGGCCTGCAGATGTGCGCAGGTATTGGTTCTTTCAGATTTTATCCAGTCTCTTTAACTTCGTGTTCGTAATCGTCGTTTCTTAACATGTTCTTTTGTCTAGGCAGAAATCATCTTCCAAATGAATTCTTAAATCATTTCTTGACAATAAAGAAGATTTTATATGAAGGGAATTCACTAAACTCGTACATATAGCTAGTTTACGTGTGAGATTTTTTTTTTTTTCTGAATCAATTATCCTGATTTGGGCGAGGATGGATAAGTTGGGACCTTTGCAATTCTAACATCTACAACTGTTATTTGTACGAGGAAGTGAGGAATATCTCGGCATAATTGTCTGCTAATTCTGGTCTTGTGTGTTTCTTAGTCACATAGGAGCTCCATCCTTAATCAACATGTCTATAAGGTTATTTATAACCAATAGTCGCTTGTAAAGGAAGATTCCTACCTGGTGCCTCTCTTTGGGAGCTTGAACTTCGCTTAAAATATTTCTAAAAACTGCTTTCTCCTTTATATGTCTTCTTTGTTACCTAGATTTTAGAGGATTGAAACTATCTGTTCTTCCACTGTATAAGCTACTCTGAACCTTGTCATCTTCTTTTACAAGAGTACAGCGTTAGTTGGTGTCATCCTCTTTCCATGATTCCAGCCATTGAACGACTCCCTATTAGGTTAAATCTCTCTGCCAATGTGCGTTAGTATTATTTTTGGGTAACTTAACTTGAAAGAAACCACATGATTTTAAGAAACACAAGCAGCAATCCACCCCCAACTCTCTAAATAAACGTATCAGTCTTAATTAAGATAATGAAAGTAATTTGAGATGTTGTATGTGATGATCGGAGAATAGTCTACAAAACATTCATGTTTTGGCTGACAACGAAGAATGAAACAGCTTACCATCCAGTTTGACATCGTGAGACCACTTCCAGAGCTTACTACAAAGTCTCAAGGTGACCATCTAAAGTCTTGGAGTATTGATCATTGAATGATTGATACCTTTTTTCTTCTATAAGAAAGAAGAAAGAATTGATATTCGGGATTTAGGTAGTGTTAGGAACCTAGGGTAGTTATATAAGTCAGTTGATAGATTTAACTAAAAGAATGGGTTGGTTAGAGTATCCAAGATGAGAGATGAGTTTGTTAGCCAAGCTGCCATGGGAGGAGTTTGATATGGGCAGGAGGTTAAAAATAGGAAGGAAGAAGTGGTGGAGAAGGAATTAGATAGACTTTGGAATTAGTTTATGAGAGAGAGCCCTCGGGAAAAAAAAATATATTAACCATTCTTCTCCATTATAGAGTTCGTTAATCTCATTTGATATGCCTGGTATCATTTGAATGGTTATTTCGCTCTTACCATCTGGCTCAATCCCACTTTCTTCCATAATTAAATGGCTGTGGGGTATTTTATAGAATGATTATGGGATTGGAGTTCAGAGCTTTCTGGGTTAATGTGGTTGAAATTTCTCTTTTTTCTGAACTCTACTCCTCTTCCCTCCCTTCAATGTTAATTTTGAATTTCCATTCTTGGAGTTACAGATTTCCATTTTCTTGAACTTGTATTATTTCTCAGCACATTTGACGAAATGCTAGTTGTTTGTAGGAATCCATTAATAAGGATGTTCGCCAATGCCTTAAATTACTTGCCATAAGTTCTAGTTTTATTTTCTTAGACAGCTATTTACAAACTGCAACCACCATTTGTTTGGGACTTCGGAATGGATAGCCACATTTCTTGATGTGTAAATATATATATATATACCTACAGGATAGTTGGGTGTATATCTCCAGAAACATGGGCTGCGATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACCAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCAATGCTGTGGCCTTTCCCGAGATCTTGGCTCCTTTTGGAATTTGCTTTTATTTGATTCATTCAAATTAACTAAAAAAACATGTTAGTTTTCTAGAAGGTCATTGAAGTGAGGTAATATCTCTTCTTTTTTCATAAGAATATTCTCCATTTTTTGTCATAGTATATATGAACAGAATTTAACAAAAGTATCCTAAATCAATTTGTTCTCATTCTATCAACGCAGGATTTGGATACTGAAATAGCGATAGGAAGGAAAGATTCAACTGCTGTTGCTGCAAATATACTCGTAGACGAGAGGCAAATGAACAAACTTTTGTGTTCGTAGCCGACAAAGTTCATAAACTTCAGGGTACACAGTACAGGTATGCTTTTGCATAGAACATCAGTCCTTAGTCTATATAATCAGAAAGTTTGCGTTATAGAACCATAAGTATTGAATACTTCTGAATAATGATCACTAGTAAAATGGTCCTTCCTTGCAACTTGAGTTTTGTTTTTTTCATTGAAGTCCTAAAATGAAGTAAGACTGAGAGCCTAGGAAAGAAGAATACATTCATGAACTTCTTGAACCATACACATTAAGAAAGGTTGATAATTTGGACCACATTTCTCTC

mRNA sequence

ATGATGTTCGACCTTCCCCCTCCTTGCAAAACCTGTACCGATTCAACCCCTTCGAAATCCCACCACCTGAAAGGAAAAAAACAGAAGATGATGGGCAAGGATAAATGTGGCGTTTGGAGCCGGAAATGGCGCTATCAAGAATTCCCACCATGCCTTCAGCCCCAACGCCTTTCGTCTCCTTGTTCGTTACACTCCAGCTCAGGACCTCTTCGATTCCCGCCTTCAAGGATAGTTGGGTGTATATCTCCAGAAACATGGGCTGCGATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACCAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCATTGAAGTGAGGATTTGGATACTGAAATAGCGATAGGAAGGAAAGATTCAACTGCTGTTGCTGCAAATATACTCGTAGACGAGAGGCAAATGAACAAACTTTTGTGTTCGTAGCCGACAAAGTTCATAAACTTCAGGGTACACAGTACAGGTATGCTTTTGCATAGAACATCAGTCCTTAGTCTATATAATCAGAAAGTTTGCGTTATAGAACCATAAGTATTGAATACTTCTGAATAATGATCACTAGTAAAATGGTCCTTCCTTGCAACTTGAGTTTTGTTTTTTTCATTGAAGTCCTAAAATGAAGTAAGACTGAGAGCCTAGGAAAGAAGAATACATTCATGAACTTCTTGAACCATACACATTAAGAAAGGTTGATAATTTGGACCACATTTCTCTC

Coding sequence (CDS)

ATGATGTTCGACCTTCCCCCTCCTTGCAAAACCTGTACCGATTCAACCCCTTCGAAATCCCACCACCTGAAAGGAAAAAAACAGAAGATGATGGGCAAGGATAAATGTGGCGTTTGGAGCCGGAAATGGCGCTATCAAGAATTCCCACCATGCCTTCAGCCCCAACGCCTTTCGTCTCCTTGTTCGTTACACTCCAGCTCAGGACCTCTTCGATTCCCGCCTTCAAGGATAGTTGGGTGTATATCTCCAGAAACATGGGCTGCGATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACCAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCATTGAAGTGAGGATTTGGATACTGAAATAG

Protein sequence

MMFDLPPPCKTCTDSTPSKSHHLKGKKQKMMGKDKCGVWSRKWRYQEFPPCLQPQRLSSPCSLHSSSGPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDVIEVRIWILK
BLAST of CmaCh04G000970 vs. Swiss-Prot
Match: Y5520_ARATH (Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISP+TWAAM+VFLASI++E+YE MASALIQMGATN DV
Sbjct: 374 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNRDV 424

BLAST of CmaCh04G000970 vs. TrEMBL
Match: A0A0A0KMB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223110 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISPETWAAMDVFLASI++EDYE MASALIQMGATNNDV
Sbjct: 327 GRIGFLDFGIVGRISPETWAAMDVFLASIATEDYESMASALIQMGATNNDV 377

BLAST of CmaCh04G000970 vs. TrEMBL
Match: R0H6B4_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000658mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.9e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISP+TWAAM+VFLASI+SE+YE MASALIQMGATN DV
Sbjct: 374 GRIGFLDFGIVGRISPKTWAAMEVFLASIASEEYESMASALIQMGATNRDV 424

BLAST of CmaCh04G000970 vs. TrEMBL
Match: A0A078C1R2_BRANA (BnaA10g25180D protein OS=Brassica napus GN=BnaA10g25180D PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDVIEVRI 124
           G + F    IVG ISP+TWAAM+VFLASI++E+YE MASALIQMGATN D ++  I
Sbjct: 373 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNIDELDTEI 428

BLAST of CmaCh04G000970 vs. TrEMBL
Match: A0A078EHJ9_BRANA (BnaC09g50120D protein OS=Brassica napus GN=BnaC09g50120D PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDVIEVRI 124
           G + F    IVG ISP+TWAAM+VFLASI++E+YE MASALIQMGATN D ++  I
Sbjct: 373 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNIDELDTEI 428

BLAST of CmaCh04G000970 vs. TrEMBL
Match: M4CXZ7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDVIEVRI 124
           G + F    IVG ISP+TWAAM+VFLASI++E+YE MASALIQMGATN D ++  I
Sbjct: 373 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNIDELDTEI 428

BLAST of CmaCh04G000970 vs. TAIR10
Match: AT5G05200.1 (AT5G05200.1 Protein kinase superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISP+TWAAM+VFLASI++E+YE MASALIQMGATN DV
Sbjct: 374 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYESMASALIQMGATNRDV 424

BLAST of CmaCh04G000970 vs. NCBI nr
Match: gi|449457387|ref|XP_004146430.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISPETWAAMDVFLASI++EDYE MASALIQMGATNNDV
Sbjct: 378 GRIGFLDFGIVGRISPETWAAMDVFLASIATEDYESMASALIQMGATNNDV 428

BLAST of CmaCh04G000970 vs. NCBI nr
Match: gi|700195576|gb|KGN50753.1| (hypothetical protein Csa_5G223110 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISPETWAAMDVFLASI++EDYE MASALIQMGATNNDV
Sbjct: 327 GRIGFLDFGIVGRISPETWAAMDVFLASIATEDYESMASALIQMGATNNDV 377

BLAST of CmaCh04G000970 vs. NCBI nr
Match: gi|659114246|ref|XP_008456971.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISPETWAAMDVFLASI++EDYE MASALIQMGATNNDV
Sbjct: 378 GRIGFLDFGIVGRISPETWAAMDVFLASIATEDYESMASALIQMGATNNDV 428

BLAST of CmaCh04G000970 vs. NCBI nr
Match: gi|1009121717|ref|XP_015877611.1| (PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 72.0 bits (175), Expect = 8.4e-10
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISP+TWAAM+VFLASI++E+YEPMASALI+MGATN DV
Sbjct: 382 GRIGFLDFGIVGRISPKTWAAMEVFLASIATEEYEPMASALIEMGATNTDV 432

BLAST of CmaCh04G000970 vs. NCBI nr
Match: gi|565458906|ref|XP_006287452.1| (hypothetical protein CARUB_v10000658mg [Capsella rubella])

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 68  GPLRFPPSRIVGCISPETWAAMDVFLASISSEDYEPMASALIQMGATNNDV 119
           G + F    IVG ISP+TWAAM+VFLASI+SE+YE MASALIQMGATN DV
Sbjct: 374 GRIGFLDFGIVGRISPKTWAAMEVFLASIASEEYESMASALIQMGATNRDV 424

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y5520_ARATH2.0e-1170.59Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic O... [more]
Match NameE-valueIdentityDescription
A0A0A0KMB7_CUCSA1.8e-1178.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223110 PE=4 SV=1[more]
R0H6B4_9BRAS9.9e-1072.55Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000658mg PE=4 SV=1[more]
A0A078C1R2_BRANA2.9e-0964.29BnaA10g25180D protein OS=Brassica napus GN=BnaA10g25180D PE=4 SV=1[more]
A0A078EHJ9_BRANA2.9e-0964.29BnaC09g50120D protein OS=Brassica napus GN=BnaC09g50120D PE=4 SV=1[more]
M4CXZ7_BRARP2.9e-0964.29Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G05200.11.1e-1270.59 Protein kinase superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449457387|ref|XP_004146430.1|2.6e-1178.43PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chlo... [more]
gi|700195576|gb|KGN50753.1|2.6e-1178.43hypothetical protein Csa_5G223110 [Cucumis sativus][more]
gi|659114246|ref|XP_008456971.1|2.6e-1178.43PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chlo... [more]
gi|1009121717|ref|XP_015877611.1|8.4e-1070.59PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chlo... [more]
gi|565458906|ref|XP_006287452.1|1.4e-0972.55hypothetical protein CARUB_v10000658mg [Capsella rubella][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0010287 plastoglobule
molecular_function GO:0016301 kinase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G000970.1CmaCh04G000970.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10566CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATEDcoord: 77..118
score: 4.0
NoneNo IPR availablePANTHERPTHR10566:SF41SUBFAMILY NOT NAMEDcoord: 77..118
score: 4.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G000970CmaCh04G010550Cucurbita maxima (Rimu)cmacmaB531