Carg24465 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24465
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ABC1 family kinase
Location	Cucurbita_argyrosperma_scaffold_303 : 44802 .. 45505 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACAAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCAATGCTGTGGCCTTTGCCAGAGATCTTGGCTCCTTTTGGAATATGCTTTTATTTCATTCATTCAAATTAACTAAAAAAAAACATGTTAGTTTTCTAGAAGGTCATTAAAGTGAGGTAACATCTCTTCTTTTTTCATAAGAATATTCTCCATTTTTTGTCATAGTATATGAACAGAATTTAACAAAAGTATCCTAAATCAATTTGTTCTCATTGTATCAACGCAGGATTTGGATACTGAAATAGCGAGAGGAAGGAAAGATTCAACTGCTGTTGCTGCAAATATACTCGTAGACGAGAGGCAAATGAACAAACTTTTGTGTTCGTAGCCGACAAAGTTCATAAACTTCAGGGTACACAGTGCAGGTATGCTTTTGCATAGAACATCAGTCCTTAGTCTATATAATCAGAAAGTTTGTGTTTTAGAACCACGAGTATTGAATACTTCTGAATAATGATCACTAGTAAAATGGTCCTTCCTTGCAACTTGAGTTTTGTATTTTTCATTGAAGTCCTAAAATGAAGTAAGACTGAGAGCCTAGGAAAGAAGAATACATTCATGAACCTCTTGAACCATACATTAAGACAAGTTGCTAATTTGGACCACTTTTCTCTCC

mRNA sequence

ATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACAAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCAATGCTGATTTGGATACTGAAATAGCGAGAGGAAGGAAAGATTCAACTGCTGTTGCTGCAAATATACTCGTAGACGAGAGGCAAATGAACAAACTTTTGTGTTCGTAGCCGACAAAGTTCATAAACTTCAGGGTACACAGTGCAGGTATGCTTTTGCATAGAACATCAGTCCTTAGTCTATATAATCAGAAAGTTTGTGTTTTAGAACCACGAGTATTGAATACTTCTGAATAATGATCACTAGTAAAATGGTCCTTCCTTGCAACTTGAGTTTTGTATTTTTCATTGAAGTCCTAAAATGAAGTAAGACTGAGAGCCTAGGAAAGAAGAATACATTCATGAACCTCTTGAACCATACATTAAGACAAGTTGCTAATTTGGACCACTTTTCTCTCC

Coding sequence (CDS)

ATGGACGTATTTTTGGCATCAATTTCATCTGAAGATTATGAACAAATGGCATCTGCCCTCATCCAAATGGGTGCCACGAATAATGACGTCAATGCTGATTTGGATACTGAAATAGCGAGAGGAAGGAAAGATTCAACTGCTGTTGCTGCAAATATACTCGTAGACGAGAGGCAAATGAACAAACTTTTGTGTTCGTAG

Protein sequence

MDVFLASISSEDYEQMASALIQMGATNNDVNADLDTEIARGRKDSTAVAANILVDERQMNKLLCS

Homology

[Close]

BLAST of Carg24465 vs. NCBI nr
Match: XP_004146430.1 (PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 55/82 (67.07%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASI++EDYE MASALIQMGATNNDVNA               DLDTEI       
Sbjct: 399 MDVFLASIATEDYESMASALIQMGATNNDVNAVAFARDLENIFSTIKDLDTEIVIATARE 458

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANILVDERQMNKL
Sbjct: 459 GRSGSTAVAANILVDERQMNKL 480

[Close]

BLAST of Carg24465 vs. NCBI nr
Match: XP_008456971.1 (PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 55/82 (67.07%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASI++EDYE MASALIQMGATNNDVNA               DLDTEI       
Sbjct: 399 MDVFLASIATEDYESMASALIQMGATNNDVNAVAFARDLENIFSTIKDLDTEIVIATARE 458

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANILVDERQMNKL
Sbjct: 459 GRSGSTAVAANILVDERQMNKL 480

[Close]

BLAST of Carg24465 vs. NCBI nr
Match: KGN50753.1 (hypothetical protein Csa_5G223110 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 55/82 (67.07%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASI++EDYE MASALIQMGATNNDVNA               DLDTEI       
Sbjct: 348 MDVFLASIATEDYESMASALIQMGATNNDVNAVAFARDLENIFSTIKDLDTEIVIATARE 407

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANILVDERQMNKL
Sbjct: 408 GRSGSTAVAANILVDERQMNKL 429

[Close]

BLAST of Carg24465 vs. NCBI nr
Match: XP_022942784.1 (uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucurbita moschata])

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASIS+EDYE MASALIQMGATNNDVN+               DLDTEI       
Sbjct: 391 MDVFLASISTEDYESMASALIQMGATNNDVNSVAFARDLENIFSSIKDLDTEIVIATGRE 450

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANI+VDERQMNKL
Sbjct: 451 GRSGSTAVAANIVVDERQMNKL 472

[Close]

BLAST of Carg24465 vs. NCBI nr
Match: XP_022986553.1 (uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 54/82 (65.85%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASIS+EDYE MASALIQMGATNNDVN+               DLDTEI       
Sbjct: 391 MDVFLASISTEDYESMASALIQMGATNNDVNSVAFARDLENIFSSIKDLDTEIVIATGRE 450

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANI+VDERQMNKL
Sbjct: 451 GRSGSTAVAANIVVDERQMNKL 472

[Close]

BLAST of Carg24465 vs. TAIR10
Match: AT5G05200.1 (Protein kinase superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEI----ARG 60
           M+VFLASI++E+YE MASALIQMGATN DV+                +LDTEI    ARG
Sbjct: 395 MEVFLASIATEEYESMASALIQMGATNRDVDGKAFAKDLEKMFSSIQELDTEIVVATARG 454

Query: 61  -RKDSTAVAANILVDERQMNKL 63
              D+TAVAAN+++DERQMN L
Sbjct: 455 TNSDTTAVAANVVMDERQMNAL 476

[Close]

BLAST of Carg24465 vs. Swiss-Prot
Match: sp|Q9ASX5|Y5520_ARATH (Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g05200 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-12
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEI----ARG 60
           M+VFLASI++E+YE MASALIQMGATN DV+                +LDTEI    ARG
Sbjct: 395 MEVFLASIATEEYESMASALIQMGATNRDVDGKAFAKDLEKMFSSIQELDTEIVVATARG 454

Query: 61  -RKDSTAVAANILVDERQMNKL 63
              D+TAVAAN+++DERQMN L
Sbjct: 455 TNSDTTAVAANVVMDERQMNAL 476

[Close]

BLAST of Carg24465 vs. TrEMBL
Match: tr|A0A1S3C5P7|A0A1S3C5P7_CUCME (uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496762 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-15
Identity = 55/82 (67.07%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASI++EDYE MASALIQMGATNNDVNA               DLDTEI       
Sbjct: 399 MDVFLASIATEDYESMASALIQMGATNNDVNAVAFARDLENIFSTIKDLDTEIVIATARE 458

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANILVDERQMNKL
Sbjct: 459 GRSGSTAVAANILVDERQMNKL 480

[Close]

BLAST of Carg24465 vs. TrEMBL
Match: tr|A0A0A0KMB7|A0A0A0KMB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223110 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-15
Identity = 55/82 (67.07%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEIA-----R 60
           MDVFLASI++EDYE MASALIQMGATNNDVNA               DLDTEI       
Sbjct: 348 MDVFLASIATEDYESMASALIQMGATNNDVNAVAFARDLENIFSTIKDLDTEIVIATARE 407

Query: 61  GRKDSTAVAANILVDERQMNKL 63
           GR  STAVAANILVDERQMNKL
Sbjct: 408 GRSGSTAVAANILVDERQMNKL 429

[Close]

BLAST of Carg24465 vs. TrEMBL
Match: tr|A0A078IM40|A0A078IM40_BRANA (BnaA03g55240D protein OS=Brassica napus OX=3708 GN=BnaA03g55240D PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-11
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNADLDTEI----ARG-RKDSTAVAANILVD 60
           M+VFLASI++E+YE MASALIQMGATN D   +LDTEI    ARG   D TAVAAN++VD
Sbjct: 392 MEVFLASIATEEYESMASALIQMGATNRD---ELDTEIVVATARGPNSDRTAVAANVVVD 451

Query: 61  ERQMNKL 63
           ERQMN L
Sbjct: 452 ERQMNAL 455

[Close]

BLAST of Carg24465 vs. TrEMBL
Match: tr|R0H6B4|R0H6B4_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10000658mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.5e-11
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEI----ARG 60
           M+VFLASI+SE+YE MASALIQMGATN DV+A               +LDTEI    ARG
Sbjct: 395 MEVFLASIASEEYESMASALIQMGATNRDVDANAFARDLEKMFSSIQELDTEIVVATARG 454

Query: 61  -RKDSTAVAANILVDERQMNKL 63
              D+TAVAAN+++DERQMN L
Sbjct: 455 TNSDTTAVAANVIMDERQMNTL 476

[Close]

BLAST of Carg24465 vs. TrEMBL
Match: tr|A0A0D3AZU3|A0A0D3AZU3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106334684 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1   MDVFLASISSEDYEQMASALIQMGATNNDVNA---------------DLDTEI----ARG 60
           M+VFLASI++E+YE MASALIQMGATN DV+A               +LDTEI    ARG
Sbjct: 392 MEVFLASIATEEYESMASALIQMGATNRDVDAKAFARDLEKMFSSIQELDTEIVVATARG 451

Query: 61  -RKDSTAVAANILVDERQMNKL 63
              D TAVAAN++VDERQMN L
Sbjct: 452 PNSDRTAVAANVVVDERQMNAL 473

The following BLAST results are available for this feature:

BLAST of Carg24465 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146430.1	8.6e-15	67.07	PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chlo...	[more]
XP_008456971.1	8.6e-15	67.07	PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chlo...	[more]
KGN50753.1	8.6e-15	67.07	hypothetical protein Csa_5G223110 [Cucumis sativus]	[more]
XP_022942784.1	1.9e-14	65.85	uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [...	[more]
XP_022986553.1	1.9e-14	65.85	uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [...	[more]

BLAST of Carg24465 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05200.1	1.5e-13	56.10	Protein kinase superfamily protein	[more]

BLAST of Carg24465 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ASX5\|Y5520_ARATH	2.7e-12	56.10	Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic O...	[more]

BLAST of Carg24465 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5P7\|A0A1S3C5P7_CUCME	5.7e-15	67.07	uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic O...	[more]
tr\|A0A0A0KMB7\|A0A0A0KMB7_CUCSA	5.7e-15	67.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223110 PE=4 SV=1	[more]
tr\|A0A078IM40\|A0A078IM40_BRANA	5.0e-11	68.66	BnaA03g55240D protein OS=Brassica napus OX=3708 GN=BnaA03g55240D PE=4 SV=1	[more]
tr\|R0H6B4\|R0H6B4_9BRAS	6.5e-11	58.54	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10000658mg PE=4 S...	[more]
tr\|A0A0D3AZU3\|A0A0D3AZU3_BRAOL	1.4e-10	58.54	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10633468...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24465-RA	Carg24465-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24465	CmaCh04G000970	Cucurbita maxima (Rimu)	carcmaB1249
Carg24465	Cp4.1LG01g05970	Cucurbita pepo (Zucchini)	carcpeB1258
Carg24465	Cla97C07G133640	Watermelon (97103) v2	carwmbB0953
Carg24465	Bhi07G000402	Wax gourd	carwgoB1053

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24465	Carg00157	Silver-seed gourd	carcarB570

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24465	Cucumber (Gy14) v2	carcgybB0898
Carg24465	Cucumber (Gy14) v1	carcgyB1028
Carg24465	Cucurbita maxima (Rimu)	carcmaB1250
Carg24465	Cucurbita moschata (Rifu)	carcmoB1219
Carg24465	Cucurbita moschata (Rifu)	carcmoB1220
Carg24465	Cucurbita pepo (Zucchini)	carcpeB1259
Carg24465	Wild cucumber (PI 183967)	carcpiB0947
Carg24465	Cucumber (Chinese Long) v2	carcuB0926
Carg24465	Cucumber (Chinese Long) v3	carcucB0948
Carg24465	Bottle gourd (USVL1VR-Ls)	carlsiB828
Carg24465	Melon (DHL92) v3.5.1	carmeB0895
Carg24465	Melon (DHL92) v3.6.1	carmedB0903
Carg24465	Watermelon (Charleston Gray)	carwcgB0887
Carg24465	Watermelon (97103) v1	carwmB0910