CmaCh02G005280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G005280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 2916504 .. 2917181 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATGGAAATTTCCCTGATTCCAAGAAATCTATAACCCAAATTCCAACACCATTCAATTTCTATTCCCATTCACTTTATTCTATTCCCACTATTTCCCCCCAACAATTTAACCTTTCTTCTCAATTTCTCCCCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGTTAGCCTGACACACCGCCGTTTGTTCAATTATTAATGGGTCCTCTGTTTCAGAGGGTTTTGATTTGGTTGTTCTTCTTGTTGTTGATTGATTGATTAATTCTTGTAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGATGGAATTTCGTTAATTAACTACTAATGCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTACAAAATTAATAATTTAAAATGTGATTAGTATAATTTATTCAATGATTAAAAATAAAGCCTCGACAGAAGAATTATCCAAA

mRNA sequence

TTGATGGAAATTTCCCTGATTCCAAGAAATCTATAACCCAAATTCCAACACCATTCAATTTCTATTCCCATTCACTTTATTCTATTCCCACTATTTCCCCCCAACAATTTAACCTTTCTTCTCAATTTCTCCCCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGATGGAATTTCGTTAATTAACTACTAATGCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTACAAAATTAATAATTTAAAATGTGATTAGTATAATTTATTCAATGATTAAAAATAAAGCCTCGACAGAAGAATTATCCAAA

Coding sequence (CDS)

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGA

Protein sequence

MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQPTPKDKTGCLEGWSVTSSVVV
Homology
[Close]
BLAST of CmaCh02G005280 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 44/85 (51.76%), Postives = 46/85 (54.12%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLPP----KDAYPPPGYPVQGYP---------TAQAYPPPPPP 60
          MS Y+  QPPVG PPPQG PP    KDAYPP GYP QGYP           Q YP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPTPKDKTGCLEG 73
          P YAPQY P  Q    +   G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]
BLAST of CmaCh02G005280 vs. TrEMBL
Match: A0A0A0LJA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PTPKDK-TGCLEG 73
          P PK++ TGCLEG
Sbjct: 61 PPPKNETTGCLEG 70

[Close]
BLAST of CmaCh02G005280 vs. TrEMBL
Match: A0A0L9TPN9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g198300 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]
BLAST of CmaCh02G005280 vs. TrEMBL
Match: A0A0S3R5D7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G360000 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]
BLAST of CmaCh02G005280 vs. TrEMBL
Match: I1MVK4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G160200 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PP+G PPPQG P KDAYPPPGYP QGYP     PP  PP  YAPQYA   Q
Sbjct: 1  MSYYDHQQQPPIGVPPPQGYPGKDAYPPPGYPAQGYP-----PPGYPPQSYAPQYA---Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ + G LEGW V+ S+
Sbjct: 61 QPPPRQEVGFLEGWYVSLSL 72

[Close]
BLAST of CmaCh02G005280 vs. TrEMBL
Match: A0A067GUB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-14
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG PPKDAYPPPGYPVQG   AQ YPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PTPKDKTGCLEG 73
          P P+ +TG LEG
Sbjct: 61 PPPRQETGFLEG 63

[Close]
BLAST of CmaCh02G005280 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 44/85 (51.76%), Postives = 46/85 (54.12%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLPP----KDAYPPPGYPVQGYP---------TAQAYPPPPPP 60
          MS Y+  QPPVG PPPQG PP    KDAYPP GYP QGYP           Q YP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPTPKDKTGCLEG 73
          P YAPQY P  Q    +   G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]
BLAST of CmaCh02G005280 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 40/72 (55.56%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 4  YDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPT---AQAYPPPPPPPVYAPQYAPTTQQ 63
          Y  +Q PVGAPPPQG PPKD YPP GYP  GYP    AQ YP    PP   PQY   +Q 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQY---SQA 61

Query: 64 PTPKDKTGCLEG 73
          P  K   G LEG
Sbjct: 62 PQQKQNAGMLEG 67

[Close]
BLAST of CmaCh02G005280 vs. NCBI nr
Match: gi|778669828|ref|XP_011649307.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PTPKDK-TGCLEG 73
          P PK++ TGCLEG
Sbjct: 61 PPPKNETTGCLEG 70

[Close]
BLAST of CmaCh02G005280 vs. NCBI nr
Match: gi|659115789|ref|XP_008457737.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 1   MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
           MSYYDHQQPPVGAPPPQG PPKD+YPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 73  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 132

Query: 61  PTPK-DKTGCLEG 73
           P PK + TGCLEG
Sbjct: 133 PPPKNESTGCLEG 142

[Close]
BLAST of CmaCh02G005280 vs. NCBI nr
Match: gi|947054954|gb|KRH04407.1| (hypothetical protein GLYMA_17G160200 [Glycine max])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PP+G PPPQG P KDAYPPPGYP QGYP     PP  PP  YAPQYA   Q
Sbjct: 1  MSYYDHQQQPPIGVPPPQGYPGKDAYPPPGYPAQGYP-----PPGYPPQSYAPQYA---Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ + G LEGW V+ S+
Sbjct: 61 QPPPRQEVGFLEGWYVSLSL 72

[Close]
BLAST of CmaCh02G005280 vs. NCBI nr
Match: gi|920688444|gb|KOM32427.1| (hypothetical protein LR48_Vigan01g198300 [Vigna angularis])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]
BLAST of CmaCh02G005280 vs. NCBI nr
Match: gi|802550735|ref|XP_012093141.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas])

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 53/85 (62.35%), Postives = 57/85 (67.06%), Query Frame = 1 

Query: 1  MSYYDHQQPPVGAPPPQGLP----PKDAYPPPGYPVQGYPTA---QAYPP---PPPPPVY 60
          MSYY+ QQPPVG PPPQG P    PKDAYPPPGYP QGYP     Q YPP   PPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPAY 60

Query: 61 APQYAPTTQQPTPKDKT---GCLEG 73
          APQY     QP P+ ++   GCLEG
Sbjct: 61 APQYG----QPPPQQQSSGPGCLEG 81

The following BLAST results are available for this feature:
BLAST of CmaCh02G005280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT1A_ARATH1.3e-0851.76Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali... [more]
BLAST of CmaCh02G005280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJA6_CUCSA4.2e-2280.82Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1[more]
A0A0L9TPN9_PHAAN6.5e-1563.75Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g198300 PE=4 SV=1[more]
A0A0S3R5D7_PHAAN6.5e-1563.75Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G360000 PE=... [more]
I1MVK4_SOYBN6.5e-1565.00Uncharacterized protein OS=Glycine max GN=GLYMA_17G160200 PE=4 SV=1[more]
A0A067GUB6_CITSI7.2e-1469.44Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1[more]
BLAST of CmaCh02G005280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41420.17.4e-1051.76 proline-rich family protein[more]
AT5G67600.11.4e-0855.56 unknown protein[more]
BLAST of CmaCh02G005280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669828|ref|XP_011649307.1|6.1e-2280.82PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc... [more]
gi|659115789|ref|XP_008457737.1|1.4e-2179.45PREDICTED: CYSTM1 family protein A-like [Cucumis melo][more]
gi|947054954|gb|KRH04407.1|9.4e-1565.00hypothetical protein GLYMA_17G160200 [Glycine max][more]
gi|920688444|gb|KOM32427.1|9.4e-1563.75hypothetical protein LR48_Vigan01g198300 [Vigna angularis][more]
gi|802550735|ref|XP_012093141.1|8.0e-1462.35PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jat... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005280.1CmaCh02G005280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..73
score: 3.9
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTM1 FAMILY PROTEIN A-RELATEDcoord: 1..73
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G005280CsaV3_2G016310Cucumber (Chinese Long) v3cmacucB0705
CmaCh02G005280Carg11607Silver-seed gourdcarcmaB1466
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G005280Melon (DHL92) v3.6.1cmamedB618
CmaCh02G005280Cucumber (Chinese Long) v3cmacucB0697
CmaCh02G005280Cucumber (Chinese Long) v3cmacucB0703
CmaCh02G005280Cucumber (Chinese Long) v3cmacucB0748
CmaCh02G005280Watermelon (97103) v2cmawmbB621
CmaCh02G005280Watermelon (97103) v2cmawmbB635
CmaCh02G005280Wax gourdcmawgoB0768
CmaCh02G005280Wax gourdcmawgoB0753
CmaCh02G005280Wax gourdcmawgoB0759
CmaCh02G005280Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G005280Cucumber (Gy14) v1cgycmaB0228
CmaCh02G005280Cucumber (Gy14) v1cgycmaB0118
CmaCh02G005280Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G005280Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G005280Wild cucumber (PI 183967)cmacpiB587
CmaCh02G005280Wild cucumber (PI 183967)cmacpiB595
CmaCh02G005280Wild cucumber (PI 183967)cmacpiB631
CmaCh02G005280Cucumber (Chinese Long) v2cmacuB582
CmaCh02G005280Cucumber (Chinese Long) v2cmacuB590
CmaCh02G005280Cucumber (Chinese Long) v2cmacuB626
CmaCh02G005280Melon (DHL92) v3.5.1cmameB534
CmaCh02G005280Melon (DHL92) v3.5.1cmameB538
CmaCh02G005280Melon (DHL92) v3.5.1cmameB584
CmaCh02G005280Watermelon (Charleston Gray)cmawcgB520
CmaCh02G005280Watermelon (Charleston Gray)cmawcgB530
CmaCh02G005280Watermelon (Charleston Gray)cmawcgB533
CmaCh02G005280Watermelon (Charleston Gray)cmawcgB545
CmaCh02G005280Watermelon (97103) v1cmawmB570
CmaCh02G005280Watermelon (97103) v1cmawmB587
CmaCh02G005280Watermelon (97103) v1cmawmB596
CmaCh02G005280Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G005280Bottle gourd (USVL1VR-Ls)cmalsiB546
CmaCh02G005280Bottle gourd (USVL1VR-Ls)cmalsiB552
CmaCh02G005280Bottle gourd (USVL1VR-Ls)cmalsiB567
CmaCh02G005280Cucumber (Gy14) v2cgybcmaB225
CmaCh02G005280Cucumber (Gy14) v2cgybcmaB231
CmaCh02G005280Cucumber (Gy14) v2cgybcmaB233
CmaCh02G005280Cucumber (Gy14) v2cgybcmaB816