CmaCh02G005280.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005280.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 2916504 .. 2917181 (-)
Sequence length	570

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATGGAAATTTCCCTGATTCCAAGAAATCTATAACCCAAATTCCAACACCATTCAATTTCTATTCCCATTCACTTTATTCTATTCCCACTATTTCCCCCCAACAATTTAACCTTTCTTCTCAATTTCTCCCCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGTTAGCCTGACACACCGCCGTTTGTTCAATTATTAATGGGTCCTCTGTTTCAGAGGGTTTTGATTTGGTTGTTCTTCTTGTTGTTGATTGATTGATTAATTCTTGTAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGATGGAATTTCGTTAATTAACTACTAATGCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTACAAAATTAATAATTTAAAATGTGATTAGTATAATTTATTCAATGATTAAAAATAAAGCCTCGACAGAAGAATTATCCAAA

mRNA sequence

TTGATGGAAATTTCCCTGATTCCAAGAAATCTATAACCCAAATTCCAACACCATTCAATTTCTATTCCCATTCACTTTATTCTATTCCCACTATTTCCCCCCAACAATTTAACCTTTCTTCTCAATTTCTCCCCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGATGGAATTTCGTTAATTAACTACTAATGCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTACAAAATTAATAATTTAAAATGTGATTAGTATAATTTATTCAATGATTAAAAATAAAGCCTCGACAGAAGAATTATCCAAA

Coding sequence (CDS)

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGGTTGCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCGGTTCAGGGCTACCCTACAGCTCAAGCGTACCCCCCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTACTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTGTAGTCTGA

Protein sequence

MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQPTPKDKTGCLEGWSVTSSVVV

Homology

[Close]

BLAST of CmaCh02G005280.1 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 44/85 (51.76%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLPP----KDAYPPPGYPVQGYP---------TAQAYPPPPPP 60
          MS Y+  QPPVG PPPQG PP    KDAYPP GYP QGYP           Q YP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPTPKDKTGCLEG 73
          P YAPQY P  Q    +   G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]

BLAST of CmaCh02G005280.1 vs. TrEMBL
Match: A0A0A0LJA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-22
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PTPKDK-TGCLEG 73
          P PK++ TGCLEG
Sbjct: 61 PPPKNETTGCLEG 70

[Close]

BLAST of CmaCh02G005280.1 vs. TrEMBL
Match: A0A0L9TPN9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g198300 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]

BLAST of CmaCh02G005280.1 vs. TrEMBL
Match: A0A0S3R5D7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G360000 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]

BLAST of CmaCh02G005280.1 vs. TrEMBL
Match: I1MVK4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G160200 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PP+G PPPQG P KDAYPPPGYP QGYP     PP  PP  YAPQYA   Q
Sbjct: 1  MSYYDHQQQPPIGVPPPQGYPGKDAYPPPGYPAQGYP-----PPGYPPQSYAPQYA---Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ + G LEGW V+ S+
Sbjct: 61 QPPPRQEVGFLEGWYVSLSL 72

[Close]

BLAST of CmaCh02G005280.1 vs. TrEMBL
Match: A0A067GUB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-14
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG PPKDAYPPPGYPVQG   AQ YPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PTPKDKTGCLEG 73
          P P+ +TG LEG
Sbjct: 61 PPPRQETGFLEG 63

[Close]

BLAST of CmaCh02G005280.1 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 44/85 (51.76%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLPP----KDAYPPPGYPVQGYP---------TAQAYPPPPPP 60
          MS Y+  QPPVG PPPQG PP    KDAYPP GYP QGYP           Q YP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPTPKDKTGCLEG 73
          P YAPQY P  Q    +   G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]

BLAST of CmaCh02G005280.1 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 40/72 (55.56%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 4  YDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPT---AQAYPPPPPPPVYAPQYAPTTQQ 63
          Y  +Q PVGAPPPQG PPKD YPP GYP  GYP    AQ YP    PP   PQY   +Q 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQY---SQA 61

Query: 64 PTPKDKTGCLEG 73
          P  K   G LEG
Sbjct: 62 PQQKQNAGMLEG 67

[Close]

BLAST of CmaCh02G005280.1 vs. NCBI nr
Match: gi|778669828|ref|XP_011649307.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PTPKDK-TGCLEG 73
          P PK++ TGCLEG
Sbjct: 61 PPPKNETTGCLEG 70

[Close]

BLAST of CmaCh02G005280.1 vs. NCBI nr
Match: gi|659115789|ref|XP_008457737.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 1


Query: 1   MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60
           MSYYDHQQPPVGAPPPQG PPKD+YPPPGYPVQGYP AQ YPPPPPPP   P YAP   Q
Sbjct: 73  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 132

Query: 61  PTPK-DKTGCLEG 73
           P PK + TGCLEG
Sbjct: 133 PPPKNESTGCLEG 142

[Close]

BLAST of CmaCh02G005280.1 vs. NCBI nr
Match: gi|947054954|gb|KRH04407.1| (hypothetical protein GLYMA_17G160200 [Glycine max])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 1


Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PP+G PPPQG P KDAYPPPGYP QGYP     PP  PP  YAPQYA   Q
Sbjct: 1  MSYYDHQQQPPIGVPPPQGYPGKDAYPPPGYPAQGYP-----PPGYPPQSYAPQYA---Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ + G LEGW V+ S+
Sbjct: 61 QPPPRQEVGFLEGWYVSLSL 72

[Close]

BLAST of CmaCh02G005280.1 vs. NCBI nr
Match: gi|920688444|gb|KOM32427.1| (hypothetical protein LR48_Vigan01g198300 [Vigna angularis])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 1  MSYYDHQQ-PPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQ 60
          MSYYDHQQ PPVG PPPQG P KD YPPPGYP QGYP A   PP  PP  YAPQ+    Q
Sbjct: 1  MSYYDHQQQPPVGVPPPQGYPGKDPYPPPGYPAQGYPPAGYPPPGYPPQGYAPQF----Q 60

Query: 61 QPTPKDKTGCLEGWSVTSSV 80
          QP P+ +TG LEGW  + S+
Sbjct: 61 QPPPRQETGFLEGWYASLSL 76

[Close]

BLAST of CmaCh02G005280.1 vs. NCBI nr
Match: gi|802550735|ref|XP_012093141.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas])

HSP 1 Score: 84.7 bits (208), Expect = 8.0e-14
Identity = 53/85 (62.35%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGLP----PKDAYPPPGYPVQGYPTA---QAYPP---PPPPPVY 60
          MSYY+ QQPPVG PPPQG P    PKDAYPPPGYP QGYP     Q YPP   PPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPAY 60

Query: 61 APQYAPTTQQPTPKDKT---GCLEG 73
          APQY     QP P+ ++   GCLEG
Sbjct: 61 APQYG----QPPPQQQSSGPGCLEG 81

The following BLAST results are available for this feature:

BLAST of CmaCh02G005280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	1.3e-08	51.76	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]

BLAST of CmaCh02G005280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA6_CUCSA	4.2e-22	80.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1	[more]
A0A0L9TPN9_PHAAN	6.5e-15	63.75	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g198300 PE=4 SV=1	[more]
A0A0S3R5D7_PHAAN	6.5e-15	63.75	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G360000 PE=...	[more]
I1MVK4_SOYBN	6.5e-15	65.00	Uncharacterized protein OS=Glycine max GN=GLYMA_17G160200 PE=4 SV=1	[more]
A0A067GUB6_CITSI	7.2e-14	69.44	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1	[more]

BLAST of CmaCh02G005280.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41420.1	7.4e-10	51.76	proline-rich family protein	[more]
AT5G67600.1	1.4e-08	55.56	unknown protein	[more]

BLAST of CmaCh02G005280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669828\|ref\|XP_011649307.1\|	6.1e-22	80.82	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
gi\|659115789\|ref\|XP_008457737.1\|	1.4e-21	79.45	PREDICTED: CYSTM1 family protein A-like [Cucumis melo]	[more]
gi\|947054954\|gb\|KRH04407.1\|	9.4e-15	65.00	hypothetical protein GLYMA_17G160200 [Glycine max]	[more]
gi\|920688444\|gb\|KOM32427.1\|	9.4e-15	63.75	hypothetical protein LR48_Vigan01g198300 [Vigna angularis]	[more]
gi\|802550735\|ref\|XP_012093141.1\|	8.0e-14	62.35	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jat...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh02G005280	CmaCh02G005280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005280.1	CmaCh02G005280.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005280.1.three_prime_UTR.1	CmaCh02G005280.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005280.1.CDS.2	CmaCh02G005280.1.CDS.2	CDS
CmaCh02G005280.1.CDS.1	CmaCh02G005280.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005280.1.five_prime_UTR.1	CmaCh02G005280.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh02G005280.1.exon.2	CmaCh02G005280.1.exon.2	exon
CmaCh02G005280.1.exon.1	CmaCh02G005280.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..73 score: 3.9
None	No IPR available	PANTHER	PTHR31568:SF3	CYSTM1 FAMILY PROTEIN A-RELATED	coord: 1..73 score: 3.9