Carg11607 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11607
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_035 : 27444 .. 28013 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCTCAAGGTTAGCCTGACACACCGCCGTTTGTTCAATTACTAATGGGTCCTCTGTTTCAGAGGTTTTGATTCATTCATTGATTGATTAATTCTTGTAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCACCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTCTTGTAATCCAATGGAATTTCTTTAATTCCTCTAATTAACTACTAATTCTCGGTCTTTACATACTTAACTTCAGAGATTAATTAATATAAAATTAATAATTTAAAATGTGATTGACGGAAGAATTATCCCAATATATAATAAAATAAATGTATTATATGATTGTTTTGCAGTTTAGCAGCACTTTGCTGTTGCTGTCTCTTGGATGCTTGCTTCTGATAAAGATGGATGGATGGATGGATGA

mRNA sequence

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCTCAAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCACCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTCTTCACTTTGCTGTTGCTGTCTCTTGGATGCTTGCTTCTGATAAAGATGGATGGATGGATGGATGA

Coding sequence (CDS)

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCTCAAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCACCTCCTCCGCCGCCGCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCACTTCCTCTGTTCTTCACTTTGCTGTTGCTGTCTCTTGGATGCTTGCTTCTGATAAAGATGGATGGATGGATGGATGA

Protein sequence

MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQPPPKDKTGCLEGWSVTSSVLHFAVAVSWMLASDKDGWMDG

Homology

[Close]

BLAST of Carg11607 vs. NCBI nr
Match: XP_022947084.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAXXXXXXXXXXXXXXXXXXXXXXXXXQGYXXXXXXXXXXXXXXXXXXX 60
          MSYYDHQQPPVGAXXXXXXXXXXXXXXXXXXXXXXXXXQGYXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MSYYDHQQPPVGAXXXXXXXXXXXXXXXXXXXXXXXXXQGYXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXDKTGCLEGWSVTSSVL 81
          XXXXDKTGCLEGWSVTSSVL
Sbjct: 61 XXXXDKTGCLEGWSVTSSVL 80

The following BLAST results are available for this feature:

BLAST of Carg11607 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947084.1	1.2e-04	100.00	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [...	[more]

BLAST of Carg11607 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11607 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11607 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11607-RA	Carg11607-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..59
None	No IPR available	PANTHER	PTHR31568:SF3	CYSTEINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN A-RELATED	coord: 1..78
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11607	CmaCh02G005280	Cucurbita maxima (Rimu)	carcmaB1466
Carg11607	CmoCh02G005400	Cucurbita moschata (Rifu)	carcmoB1422
Carg11607	Cp4.1LG05g11520	Cucurbita pepo (Zucchini)	carcpeB1476

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11607	Wild cucumber (PI 183967)	carcpiB1093
Carg11607	Cucumber (Chinese Long) v2	carcuB1070
Carg11607	Cucumber (Chinese Long) v3	carcucB1103
Carg11607	Melon (DHL92) v3.5.1	carmeB1028
Carg11607	Melon (DHL92) v3.6.1	carmedB1042