Cp4.1LG05g11520 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g11520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 7818506 .. 7819348 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATGGAAACACGTAGAGCATAGAATAGGAATATATTTTGATGGAAATTTCCCTCATTCCAAGAAATCTATAACCCAAATTCCAATTCCTTTCATCTCCAACACCATTCAATTTCTATATATTCTATTCCCACTCTTTTCCCTCAACAATTTAACCATTCTTCTCGATTTCTCCTCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGTTAGCCTGACACACCGCCGTTTGTTCAATTACTAATGGGTCCTCTGTTTCAGAGGTTTTCATTCATTGATTGATTCATTAATTCTTGTAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCGCTTCCTCTGTTCTTGTAATCTAATGGAATTTCTTTAATTCCTCTAATTAACTACTAATTCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTAGAAAATTAATAATTTAAAATGTGATTAACAGAAGAATTTTATCCAATATATAATAAAATAAATGTATTATATGATTGTTTTGCAGTTTAGCAGCACTTTGCTGTTGCTGTCTCTTGGATGCTTGCTTCTGATAAAGATGGATGGATGGATGATCTTAAGCACTCAACTTATTATTCTAATTTCATTGCATTGTAGTATCACCATCATC

mRNA sequence

TGATGGAAACACGTAGAGCATAGAATAGGAATATATTTTGATGGAAATTTCCCTCATTCCAAGAAATCTATAACCCAAATTCCAATTCCTTTCATCTCCAACACCATTCAATTTCTATATATTCTATTCCCACTCTTTTCCCTCAACAATTTAACCATTCTTCTCGATTTCTCCTCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGTATCACCATCATC

Coding sequence (CDS)

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGTATCACCATCATC

Protein sequence

MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQPPPKDKTGCLEGCITII
BLAST of Cp4.1LG05g11520 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-11
Identity = 46/90 (51.11%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------TAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPPPKDKTGCLEGCITII 78
          P YAPQY P  Q    +   G LEGC+  +
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAAL 88

BLAST of Cp4.1LG05g11520 vs. TrEMBL
Match: A0A0A0LJA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PPPKDK-TGCLEGCITII 78
          PPPK++ TGCLEGC+  +
Sbjct: 61 PPPKNETTGCLEGCLAAL 75

BLAST of Cp4.1LG05g11520 vs. TrEMBL
Match: A0A067GUB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

BLAST of Cp4.1LG05g11520 vs. TrEMBL
Match: V4RWV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026875mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPP      YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPSQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

BLAST of Cp4.1LG05g11520 vs. TrEMBL
Match: A0A067DGG2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034942mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPP      YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPSQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

BLAST of Cp4.1LG05g11520 vs. TrEMBL
Match: A0A061E1I0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007244 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-16
Identity = 55/83 (66.27%), Postives = 60/83 (72.29%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPP----KDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAP 60
          MSYY+ QQPPVG PPPQG+PP    KDAYPPPGYP QGYP  QGYPP   PP YAPQYA 
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYAKDAYPPPGYPPQGYP--QGYPPQGYPPPYAPQYA- 60

Query: 61 TTQQPPPKDK--TGCLEGCITII 78
            Q PPP+ K  TG LEGC+  +
Sbjct: 61 --QAPPPQQKQSTGFLEGCLAAL 78

BLAST of Cp4.1LG05g11520 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-12
Identity = 46/90 (51.11%), Postives = 51/90 (56.67%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------TAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPPPKDKTGCLEGCITII 78
          P YAPQY P  Q    +   G LEGC+  +
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAAL 88

BLAST of Cp4.1LG05g11520 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-11
Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 1

Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPT---AQGYPPPPPPPVYAPQYAPTTQQ 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP   PQY   +Q 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQY---SQA 61

Query: 64 PPPKDKTGCLEGCITII 78
          P  K   G LEGC+  +
Sbjct: 62 PQQKQNAGMLEGCLAAL 72

BLAST of Cp4.1LG05g11520 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 47/117 (40.17%), Postives = 54/117 (46.15%), Query Frame = 1

Query: 1   MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPV---------------------------Q 60
           MSY D Q P V APPPQG+PPK+ YPP GYP                            Q
Sbjct: 1   MSYQDPQHP-VSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQ 60

Query: 61  GYPTAQGYPPPPPPPVYAPQYAPTTQQPPP-------------KDKTGCLEGCITII 78
           GYP AQGYPPP  P  + PQY P    PPP             KD  G +EGC+ ++
Sbjct: 61  GYP-AQGYPPPQYPQGHPPQY-PYQGPPPPHYGQAPPKNKKDKKDSGGFMEGCLAML 114

BLAST of Cp4.1LG05g11520 vs. NCBI nr
Match: gi|778669828|ref|XP_011649307.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PPPKDK-TGCLEGCITII 78
          PPPK++ TGCLEGC+  +
Sbjct: 61 PPPKNETTGCLEGCLAAL 75

BLAST of Cp4.1LG05g11520 vs. NCBI nr
Match: gi|659115789|ref|XP_008457737.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-25
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1

Query: 1   MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
           MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 73  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 132

Query: 61  PPPK-DKTGCLEGCITII 78
           PPPK + TGCLEGC+  +
Sbjct: 133 PPPKNESTGCLEGCLAAL 147

BLAST of Cp4.1LG05g11520 vs. NCBI nr
Match: gi|802550735|ref|XP_012093141.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYPTA---QGYPP---PPPPPVY 60
          MSYY+ QQPPVG PPPQG+P    PKDAYPPPGYP QGYP     QGYPP   PPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPAY 60

Query: 61 APQYAPTTQQPPPKDKT---GCLEGCITII 78
          APQY     QPPP+ ++   GCLEGC+  +
Sbjct: 61 APQYG----QPPPQQQSSGPGCLEGCLAAL 86

BLAST of Cp4.1LG05g11520 vs. NCBI nr
Match: gi|568824124|ref|XP_006466453.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Citrus sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

BLAST of Cp4.1LG05g11520 vs. NCBI nr
Match: gi|1009145343|ref|XP_015890283.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 1

Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGY-PTAQGYPPPP-PPPVYAPQYAPTT 60
          MSYY++QQPPVG PPPQG+PPKDAYPPPGYP QGY P  QGYPP   PP  YAPQYA   
Sbjct: 1  MSYYNNQQPPVGVPPPQGYPPKDAYPPPGYPPQGYPPPQQGYPPQGYPPQGYAPQYA--- 60

Query: 61 QQPPPK--DKTGCLEGCITII 78
           QPPP+  + TGCLEGC+  +
Sbjct: 61 -QPPPRQDNTTGCLEGCLAAL 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CYT1A_ARATH4.6e-1151.11Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali... [more]
Match NameE-valueIdentityDescription
A0A0A0LJA6_CUCSA1.0e-2580.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1[more]
A0A067GUB6_CITSI3.0e-1768.83Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1[more]
V4RWV0_9ROSI2.5e-1667.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026875mg PE=4 SV=1[more]
A0A067DGG2_CITSI2.5e-1667.53Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034942mg PE=4 SV=1[more]
A0A061E1I0_THECC5.6e-1666.27Uncharacterized protein OS=Theobroma cacao GN=TCM_007244 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G41420.12.6e-1251.11 proline-rich family protein[more]
AT5G67600.14.9e-1154.55 unknown protein[more]
AT3G49845.11.7e-0840.17 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778669828|ref|XP_011649307.1|1.5e-2580.77PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc... [more]
gi|659115789|ref|XP_008457737.1|3.3e-2579.49PREDICTED: CYSTM1 family protein A-like [Cucumis melo][more]
gi|802550735|ref|XP_012093141.1|4.3e-1762.22PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jat... [more]
gi|568824124|ref|XP_006466453.1|4.3e-1768.83PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Citrus s... [more]
gi|1009145343|ref|XP_015890283.1|4.3e-1767.90PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11520.1Cp4.1LG05g11520.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 45..74
score: 1.
NoneNo IPR availablePANTHERPTHR31568FAMILY NOT NAMEDcoord: 1..74
score: 7.5
NoneNo IPR availablePANTHERPTHR31568:SF3CYSTM1 FAMILY PROTEIN A-RELATEDcoord: 1..74
score: 7.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11520CsaV3_2G016310Cucumber (Chinese Long) v3cpecucB0883
Cp4.1LG05g11520Carg11607Silver-seed gourdcarcpeB1476
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g11520Silver-seed gourdcarcpeB0568
Cp4.1LG05g11520Cucumber (Chinese Long) v3cpecucB0881
Cp4.1LG05g11520Cucumber (Chinese Long) v3cpecucB0943
Cp4.1LG05g11520Wax gourdcpewgoB0965
Cp4.1LG05g11520Cucurbita pepo (Zucchini)cpecpeB097
Cp4.1LG05g11520Cucurbita pepo (Zucchini)cpecpeB421
Cp4.1LG05g11520Cucumber (Gy14) v1cgycpeB0115
Cp4.1LG05g11520Cucumber (Gy14) v1cgycpeB0223
Cp4.1LG05g11520Cucumber (Gy14) v1cgycpeB0974
Cp4.1LG05g11520Cucurbita maxima (Rimu)cmacpeB585
Cp4.1LG05g11520Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g11520Cucurbita moschata (Rifu)cmocpeB534
Cp4.1LG05g11520Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g11520Wild cucumber (PI 183967)cpecpiB708
Cp4.1LG05g11520Wild cucumber (PI 183967)cpecpiB712
Cp4.1LG05g11520Wild cucumber (PI 183967)cpecpiB764
Cp4.1LG05g11520Cucumber (Chinese Long) v2cpecuB706
Cp4.1LG05g11520Cucumber (Chinese Long) v2cpecuB710
Cp4.1LG05g11520Cucumber (Chinese Long) v2cpecuB763
Cp4.1LG05g11520Bottle gourd (USVL1VR-Ls)cpelsiB589
Cp4.1LG05g11520Bottle gourd (USVL1VR-Ls)cpelsiB594
Cp4.1LG05g11520Bottle gourd (USVL1VR-Ls)cpelsiB610
Cp4.1LG05g11520Watermelon (Charleston Gray)cpewcgB642
Cp4.1LG05g11520Watermelon (Charleston Gray)cpewcgB648
Cp4.1LG05g11520Watermelon (Charleston Gray)cpewcgB663
Cp4.1LG05g11520Watermelon (97103) v1cpewmB720
Cp4.1LG05g11520Watermelon (97103) v1cpewmB726
Cp4.1LG05g11520Melon (DHL92) v3.5.1cpemeB660
Cp4.1LG05g11520Melon (DHL92) v3.5.1cpemeB672
Cp4.1LG05g11520Melon (DHL92) v3.5.1cpemeB673
Cp4.1LG05g11520Melon (DHL92) v3.5.1cpemeB706
Cp4.1LG05g11520Cucumber (Gy14) v2cgybcpeB242
Cp4.1LG05g11520Cucumber (Gy14) v2cgybcpeB244
Cp4.1LG05g11520Melon (DHL92) v3.6.1cpemedB794
Cp4.1LG05g11520Melon (DHL92) v3.6.1cpemedB805