CmaCh01G005360 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G005360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription initiation factor TFIIH subunit 2
LocationCma_Chr01 : 2786928 .. 2789717 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCTGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCTCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCCTTAGCAACTACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGTTGGTTTCCTTTTTCATTCATGTCTCTATTACTCCCTGCTATTTGATTTGATCTGACCTATGCCTTCGCTTTTGATGTTCTTATTGAGATAAGGGATTTGTGATGTTCATCAAGTTAAATGCATAGAATCTCTGTTGAAATGTTTTTCATTGAAAATATGGAGTAGATCACAAGACAAACAAACTTTCAAGTAATCTTAATTTCCAGAAATCAAATACTAACAATCAAATGATTATCAAACATGGACTTCTCCCAAGAACTATAATGTGTGGTATAATCTCATTTGCCCAACTTGTTTGTTCTCTGATTACGTTAGGAAGGGTCTGGGAAGTATTTTGTGAATGAGTTTAGTTTAGAGCATGAATTTCTGTCCATAGAAACTGTAAAAGTGATGGAATGGTGGTTTTTCCTTTTCTATTTCTCTTATTTTGCGTATCTCTCGACGCGCAGGCAGCAGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGGAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAATCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCATACTTGGTCGCATTGGATGAGGTGAGTTTAATTGGATGTGTTTCCTAAAATGAAGAACTAACCATAAAATTTCTGCAGCAAGACTCTGTTGATGTTTTTATATGGGAGTACTTCGCTAAATGTTTGTGAAAAACTTGCCTTTTTTGTAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCGATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTAAGAACTCAAATGAACATGATGTTTGGAATTATGGTCTTCTAGTAATATAATATACGTGTCGGCTTAGTGAGCGTGGATATCTTAAAATCAGGTGGAGTGAAAAGAACAGACCTTGTGTCTTTCTTACTCGGGGTTCTTTAAGCTGGGTGCTATTTTCAAATGGCCCGTAACGTTTGATTCCTAAAGTATAGAATGTTGTGTTTAAAAGAACTTCCACGTTTTCTGTTCATGGTTTGGTCATTCTTCATTACTAAATTTTGTGCTGCATCAGTACTATGCTGAAACAATCTCATGGGGATTTAAGTTGTCTCTGTATTGGGTGACTTAAGATTATTACATTGCTCATATGTGATCCTGTTTAAGGCAATAGAAGCAACTTTATGAAGAAATATGGATGATTTCTGCACTATGCATCGAACTTTTGACTCATTGAAATGTACATTCTTTTCATATTAGGTACAGGTAACAGCCCCGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGAACGGATGCGAACTTCTGATGGTTAAACACCTTCCTTTGGACCGAATGCATACCCTTAACCAAATCCAAACTCTATTATGGCCATGTCAATGCTGTCTGTTCATTTGGTTTAAAGCTGTTATCAGTTTTGTACCAAAGTTTCAAGTGTGTCCTATGATGAATCAGAGGCTCACATTGTTACTGTTGAAGTTGTCTTTGATGTTTCGACAGACAGCTCAACCTATTTTTCAGAGGCCAAGTTCATGGGCGTGGCTTTTTTACACTTGAACCCATTGTTGAAATTGGCTAAAATTTCGTTCTGAGAATAAGATTTCACAAAACTAACAGGCCGCTCAGTTTCATAGGAAGGCCGATTTCCAATGGTTTGACTCGTGTACTCAAAATTGAACCCCCAGGGGACAATTCCCATTCTCATTTTCATGTGGATGTGCAGGAGCTTTATATTGTCTGAATTATTCAGTGGTATTTGACTTTCATA

mRNA sequence

ATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCTGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCTCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCCTTAGCAACTACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCAGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGGAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAATCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCATACTTGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCGATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCCGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGAACGGATGCGAACTTCTGATGGTTAAACACCTTCCTTTGGACCGAATGCATACCCTTAACCAAATCCAAACTCTATTATGGCCATGTCAATGCTGTCTGTTCATTTGGTTTAAAGCTGTTATCAGTTTTGTACCAAAGTTTCAAGTGTGTCCTATGATGAATCAGAGGCTCACATTGTTACTGTTGAAGTTGTCTTTGATGTTTCGACAGACAGCTCAACCTATTTTTCAGAGGCCAAGTTCATGGGCGTGGCTTTTTTACACTTGAACCCATTGTTGAAATTGGCTAAAATTTCGTTCTGAGAATAAGATTTCACAAAACTAACAGGCCGCTCAGTTTCATAGGAAGGCCGATTTCCAATGGTTTGACTCGTGTACTCAAAATTGAACCCCCAGGGGACAATTCCCATTCTCATTTTCATGTGGATGTGCAGGAGCTTTATATTGTCTGAATTATTCAGTGGTATTTGACTTTCATA

Coding sequence (CDS)

ATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCTGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCTCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCCTTAGCAACTACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCAGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGGAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAATCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCATACTTGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCGATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCCGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

Protein sequence

MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSATSDD
Homology
[Close]
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match: TF2H2_ARATH (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 2.2e-187
Identity = 314/420 (74.76%), Postives = 357/420 (85.00%), Query Frame = 1 

Query: 3   NGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQ 62
           + + +R N E EEEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AI+HAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLY+VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLNQ 182
           DQNPLSQIGLV+IK+GVAH+LTDLGGSPE+H+KALMGKLE  G++SLQN L+LV  +LNQ
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGG 302
           Y VA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKE K+G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L 
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           K CFGCQ++    G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

[Close]
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match: TF2H2_BOVIN (General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.2e-89
Identity = 166/396 (41.92%), Postives = 240/396 (60.61%), Query Frame = 1 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYLVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           ++S   +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ CQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYACQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match: TF2H2_HUMAN (General transcription factor IIH subunit 2 OS=Homo sapiens GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.6e-89
Identity = 168/396 (42.42%), Postives = 242/396 (61.11%), Query Frame = 1 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYLVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+GCQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match: T2H2L_HUMAN (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.1e-89
Identity = 168/396 (42.42%), Postives = 242/396 (61.11%), Query Frame = 1 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYLVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+GCQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match: TF2H2_MOUSE (General transcription factor IIH subunit 2 OS=Mus musculus GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 7.9e-89
Identity = 167/397 (42.07%), Postives = 242/397 (60.96%), Query Frame = 1 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDE+G L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYLVALDESHFKELLLEHAPPPPAI 268
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA------GESSIAICSCH------KEAKVGGGYTCPRCKARVCE 328
           + S+  +LI+MGFPQ         ++  +    H      +     GGY CP+C+A+ CE
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 329 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNP 388
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+S + +   R      C+GCQ    + 
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYKGER-----FCYGCQGELKDQ 370

Query: 389 GTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                      C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 HV-------YVCTVCQNVFCVDCDVFVHDSLHCCPGC 386

[Close]
BLAST of CmaCh01G005360 vs. TrEMBL
Match: A0A0A0KPM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169080 PE=4 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 7.9e-237
Identity = 396/424 (93.40%), Postives = 411/424 (96.93%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDANG +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANG-LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 423

[Close]
BLAST of CmaCh01G005360 vs. TrEMBL
Match: F6GTZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03170 PE=4 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 6.3e-202
Identity = 340/419 (81.15%), Postives = 377/419 (89.98%), Query Frame = 1 

Query: 2   NNGENRRLNGEAEEEDDDDD-ANG-GMAAWERTYADDRSWEALQEDESGLLRPIDNKAIF 61
           N+GE RRL+GE EEE++D+D  NG G+ AWER YAD+RSWE+LQEDESGLLRPIDNK I+
Sbjct: 10  NDGEGRRLDGEEEEEEEDEDEGNGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIY 69

Query: 62  HAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVR 121
           HAQYRRR+RSL S  TTARIQKGLIRYLY+V+D SRAA+EMDF+PSRMAVVAKH+EAF+R
Sbjct: 70  HAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIR 129

Query: 122 EFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGY 181
           EFFDQNPLSQIGLVTIKDG+A  LTDLGGSP+SHVKALMGKLECSG++SLQN LDLV GY
Sbjct: 130 EFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGY 189

Query: 182 LNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQET 241
           LNQIPSYGHREVLILYSAL++CDPGDIMET+Q+CK SKIRCSVIGL+AE+FICRHLCQET
Sbjct: 190 LNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQET 249

Query: 242 GGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKV 301
           GGSY VALDESHFKELLLEHAPPPPAIA+ A+ NLIKMGFPQRA E  I+ICSCHKEAKV
Sbjct: 250 GGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKV 309

Query: 302 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQ 361
           GGGYTCPRCKARVCELPTECRICGLTL+SSPHLARSYHHLFPI PFDEVS  L ++P  +
Sbjct: 310 GGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQR 369

Query: 362 LPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
             + CFGCQE+   P  GN P + V+CPKCKQHFCLDCDIYIHESLHNCPGCESFR  K
Sbjct: 370 SSRACFGCQESLLIP--GNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSK 426

[Close]
BLAST of CmaCh01G005360 vs. TrEMBL
Match: W9RVY0_9ROSA (General transcription factor IIH subunit 2 OS=Morus notabilis GN=L484_014405 PE=4 SV=1)

HSP 1 Score: 710.7 bits (1833), Expect = 1.1e-201
Identity = 340/420 (80.95%), Postives = 373/420 (88.81%), Query Frame = 1 

Query: 2   NNGENRRLNGEAEEEDDDDDANG---GMAAWERTYADDRSWEALQEDESGLLRPIDNKAI 61
           NNGE RRLNG AE++DDD+D +G   G+ AWERTYAD+RSWE+LQEDESGLLRPIDNK  
Sbjct: 3   NNGEERRLNGAAEDDDDDEDDDGNGRGLEAWERTYADERSWESLQEDESGLLRPIDNKTF 62

Query: 62  FHAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFV 121
           +HAQYRRRLRS S++    RIQKGLIRYL++VID S+AAAEMDFRPSRMAVVAKHVEAF+
Sbjct: 63  YHAQYRRRLRSASAV----RIQKGLIRYLFLVIDLSKAAAEMDFRPSRMAVVAKHVEAFI 122

Query: 122 REFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCG 181
           REFFDQNPLSQ+GLVTIKDGVAH LTDLGGSPESHVK+LMGKLECSGE+S+QN LDLV  
Sbjct: 123 REFFDQNPLSQVGLVTIKDGVAHCLTDLGGSPESHVKSLMGKLECSGESSIQNALDLVHD 182

Query: 182 YLNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQE 241
           YLNQIPSYGHREVLI YSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQE
Sbjct: 183 YLNQIPSYGHREVLIFYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQE 242

Query: 242 TGGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAK 301
           TGGSY VALDESHFKEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA ESSIAICSCHKEAK
Sbjct: 243 TGGSYSVALDESHFKELILEHAPPPPAIAEYAIANLIKMGFPQRAAESSIAICSCHKEAK 302

Query: 302 VGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRH 361
            GGGYTCPRCKARVCELPTEC+ CGLTLISSPHLARSYHHLFPI+PFDE+S  L  DP  
Sbjct: 303 AGGGYTCPRCKARVCELPTECQTCGLTLISSPHLARSYHHLFPIVPFDEMSTSLLSDPHR 362

Query: 362 QLPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
           +L K CFGCQ++    G GN PG RVSCPKCK  FCLDCDIYIHESLHNCPGCES R  K
Sbjct: 363 KLSKACFGCQQSLL--GFGNKPGPRVSCPKCKHQFCLDCDIYIHESLHNCPGCESARHSK 416

[Close]
BLAST of CmaCh01G005360 vs. TrEMBL
Match: A0A061GUH7_THECC (General transcription factor II H2 isoform 1 OS=Theobroma cacao GN=TCM_041075 PE=4 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 1.4e-201
Identity = 333/419 (79.47%), Postives = 372/419 (88.78%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNG  RR+NG  EE+DD+D  NG + AWERTY D+RSWE+LQEDESGLLRPIDNKA++H
Sbjct: 1   MNNGGARRMNGGGEEDDDEDYVNGDLDAWERTYTDERSWESLQEDESGLLRPIDNKALYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           +QYRRRLRSLSS AT ARIQKGLIRYLY+VID SRAA+E DFRPSR+ V+AKHVEAF+RE
Sbjct: 61  SQYRRRLRSLSSTATAARIQKGLIRYLYLVIDLSRAASETDFRPSRIVVIAKHVEAFIRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQ+GL+TIKDGVA  LTDLGGSPESH+KALM KLECSG++SLQN LDLV GYL
Sbjct: 121 FFDQNPLSQVGLLTIKDGVAQCLTDLGGSPESHIKALMNKLECSGDSSLQNALDLVDGYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           NQIPSYGHREVLILY+AL++CDPGDIMET+QKCK SKIRCSVIGL AE+FIC+HLCQETG
Sbjct: 181 NQIPSYGHREVLILYAALSTCDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG 240

Query: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           G+Y VALDESHFKEL+LEHAPPPPAIA+ A  NLIKMGFPQRA E SI+ICSCHKEAKVG
Sbjct: 241 GTYSVALDESHFKELILEHAPPPPAIAEFATANLIKMGFPQRAAEGSISICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
            GYTCPRCKARVCELPTECRICGLTL+SSPHLARSYHHLFPI PFDEV     +DP H+L
Sbjct: 301 AGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVPPFSLNDPNHKL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKS 420
            + CFGCQ++  NP  GN PG+ V CPKCK +FCLDCDIYIHESLHNCPGC+SFR  K+
Sbjct: 361 QRNCFGCQQSLLNP--GNKPGLLVVCPKCKGYFCLDCDIYIHESLHNCPGCDSFRHSKA 417

[Close]
BLAST of CmaCh01G005360 vs. TrEMBL
Match: M5VYB6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006259mg PE=4 SV=1)

HSP 1 Score: 707.6 bits (1825), Expect = 9.1e-201
Identity = 334/419 (79.71%), Postives = 376/419 (89.74%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDAN-GGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIF 60
           MNNGE RRLNGEAEE++++DDAN GG+AAWER YAD+RSWE+LQEDESGLL+PIDN+++ 
Sbjct: 1   MNNGEQRRLNGEAEEDEEEDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK 60

Query: 61  HAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVR 120
           HAQYRRRLR+    A+TARIQKGLIRY+Y+VID S+AAAEMDFRPSRM VVAKHVEAF+ 
Sbjct: 61  HAQYRRRLRA----ASTARIQKGLIRYVYIVIDLSKAAAEMDFRPSRMGVVAKHVEAFII 120

Query: 121 EFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGY 180
           EFF QNPLSQ+GLVTIKDGVAH LTDLGGSP SHVKALMGKLECSG++SLQN LDLV GY
Sbjct: 121 EFFYQNPLSQVGLVTIKDGVAHCLTDLGGSPNSHVKALMGKLECSGDSSLQNALDLVHGY 180

Query: 181 LNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQET 240
           L QIPSYGHREVLILYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQET
Sbjct: 181 LEQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQET 240

Query: 241 GGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKV 300
           GG Y +ALDE H KEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKEAKV
Sbjct: 241 GGLYYIALDEPHLKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKV 300

Query: 301 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQ 360
           GGGYTCPRCKARVC+LPTECRICGLTLISSPHLARSYHHLFPI+PFDEVS  L  D +++
Sbjct: 301 GGGYTCPRCKARVCDLPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSPSLLIDQQNK 360

Query: 361 LPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
            P+ CFGCQ++  NP  GN P +RV+CPKCKQHFCLDCDIYIH+SLHNCPGCES    K
Sbjct: 361 FPRACFGCQQSLLNP--GNKPSLRVACPKCKQHFCLDCDIYIHDSLHNCPGCESASHSK 413

[Close]
BLAST of CmaCh01G005360 vs. TAIR10
Match: AT1G05055.1 (AT1G05055.1 general transcription factor II H2)

HSP 1 Score: 656.4 bits (1692), Expect = 1.2e-188
Identity = 314/420 (74.76%), Postives = 357/420 (85.00%), Query Frame = 1 

Query: 3   NGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQ 62
           + + +R N E EEEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AI+HAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLY+VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLNQ 182
           DQNPLSQIGLV+IK+GVAH+LTDLGGSPE+H+KALMGKLE  G++SLQN L+LV  +LNQ
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGG 302
           Y VA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKE K+G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L 
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           K CFGCQ++    G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

[Close]
BLAST of CmaCh01G005360 vs. NCBI nr
Match: gi|449451946|ref|XP_004143721.1| (PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus])

HSP 1 Score: 827.4 bits (2136), Expect = 1.1e-236
Identity = 396/424 (93.40%), Postives = 411/424 (96.93%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDANG +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANG-LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 423

[Close]
BLAST of CmaCh01G005360 vs. NCBI nr
Match: gi|659073175|ref|XP_008467294.1| (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 827.4 bits (2136), Expect = 1.1e-236
Identity = 397/424 (93.63%), Postives = 410/424 (96.70%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEA+EEDDDDDANG +AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANG-LAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDD 425
           T D+
Sbjct: 421 TFDE 423

[Close]
BLAST of CmaCh01G005360 vs. NCBI nr
Match: gi|694420768|ref|XP_009338275.1| (PREDICTED: general transcription factor IIH subunit 2 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 722.2 bits (1863), Expect = 5.1e-205
Identity = 340/419 (81.15%), Postives = 382/419 (91.17%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDAN-GGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIF 60
           MNNGE RRLNGEAEE++DDDDAN GG+AAWER YAD+RSWE+LQEDESGLL+PIDN+++ 
Sbjct: 1   MNNGEQRRLNGEAEEDEDDDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK 60

Query: 61  HAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVR 120
           HAQYRRRLR+    A+TARIQKGLIRYL++VID S+AAAEMDFRPSRM VVAKHVEAF+R
Sbjct: 61  HAQYRRRLRA----ASTARIQKGLIRYLFIVIDLSKAAAEMDFRPSRMGVVAKHVEAFIR 120

Query: 121 EFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGY 180
           EFF QNPLSQ+GLVT+KDGVAH LTDLGGSPESHVKALMGKLECSG++SLQN LDLV GY
Sbjct: 121 EFFYQNPLSQVGLVTVKDGVAHCLTDLGGSPESHVKALMGKLECSGDSSLQNALDLVHGY 180

Query: 181 LNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQET 240
           LNQIPSYGHREVLILYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+F+C+HLCQET
Sbjct: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFVCKHLCQET 240

Query: 241 GGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKV 300
           GGSY +ALDE+H KEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKEAKV
Sbjct: 241 GGSYYIALDEAHLKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKV 300

Query: 301 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQ 360
           G GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPI+PFDEVS  L  D +++
Sbjct: 301 GAGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSLSLLIDQQNK 360

Query: 361 LPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
            P+ CFGCQ+N   P  GN PG+RV+CPKCKQHFCL+CDIYIHESLHNCPGCES RR +
Sbjct: 361 FPRACFGCQQNLLGP--GNKPGLRVACPKCKQHFCLECDIYIHESLHNCPGCESTRRSR 413

[Close]
BLAST of CmaCh01G005360 vs. NCBI nr
Match: gi|657952633|ref|XP_008358377.1| (PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 2 [Malus domestica])

HSP 1 Score: 716.1 bits (1847), Expect = 3.7e-203
Identity = 338/419 (80.67%), Postives = 379/419 (90.45%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDAN-GGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIF 60
           MNNGE RRLNGEAEE++DDDDAN GG+AAWER YAD+RSWE+LQEDESGLL+PIDN+++ 
Sbjct: 1   MNNGEQRRLNGEAEEDEDDDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQSLK 60

Query: 61  HAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVR 120
           HAQYRRRLR+    A+TARIQKGLIRYL++VID S+AAAEMDFRPSRM VVAKHVEAF+R
Sbjct: 61  HAQYRRRLRA----ASTARIQKGLIRYLFIVIDLSKAAAEMDFRPSRMGVVAKHVEAFIR 120

Query: 121 EFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGY 180
           EFF QNPLSQ+GLVT+KDGVAH LTDLGGSPESHVKALMGKLECSG++SLQN LDLV GY
Sbjct: 121 EFFYQNPLSQVGLVTVKDGVAHCLTDLGGSPESHVKALMGKLECSGDSSLQNALDLVHGY 180

Query: 181 LNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQET 240
           LNQIPSYGHREVLILYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQET
Sbjct: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQET 240

Query: 241 GGSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKV 300
           GG Y +ALDE+H KEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA E S+AICSCHKEAKV
Sbjct: 241 GGLYYIALDEAHLKELILEHAPPPPAIAEFAIANLIKMGFPQRAXEGSVAICSCHKEAKV 300

Query: 301 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQ 360
           G GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPI+PFDEV   L  D +++
Sbjct: 301 GAGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVPLSLLIDQQNK 360

Query: 361 LPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
            P+ CFGCQ+N   P  GN PG+RV+CPKCKQHFCL+CDIYIHESLHNCPGCES R  +
Sbjct: 361 FPRACFGCQQNLLGP--GNKPGLRVACPKCKQHFCLECDIYIHESLHNCPGCESTRHSR 413

[Close]
BLAST of CmaCh01G005360 vs. NCBI nr
Match: gi|470148666|ref|XP_004309875.1| (PREDICTED: general transcription factor IIH subunit 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 715.7 bits (1846), Expect = 4.8e-203
Identity = 335/424 (79.01%), Postives = 383/424 (90.33%), Query Frame = 1 

Query: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNG+ RRLNGE EE+++D++ N G+AAWER YAD+RSWE+LQEDESGLLRPIDN+++ H
Sbjct: 1   MNNGDQRRLNGEIEEDEEDEENNDGLAAWERAYADERSWESLQEDESGLLRPIDNQSLHH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+    ATTARIQKGLIRYLY+VID S+AA+EMDFRPSRM VVAKHVEAF+RE
Sbjct: 61  AQYRRRLRA----ATTARIQKGLIRYLYIVIDLSKAASEMDFRPSRMGVVAKHVEAFIRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           +F QNPLSQ+GLVTIKDGV+H LTDLGGSPESHVKALMGKLECSG+ASLQN LDLV GYL
Sbjct: 121 YFYQNPLSQVGLVTIKDGVSHILTDLGGSPESHVKALMGKLECSGDASLQNALDLVQGYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLI+YSAL++CDPGDIM T+QKCK SKIRCSVIGL+AE+FIC+HLCQETG
Sbjct: 181 DQIPSYGHREVLIMYSALSTCDPGDIMGTIQKCKKSKIRCSVIGLSAEIFICKHLCQETG 240

Query: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY +ALDESH K+L+LEHAPPPPAIA+ A+ NLIKMGFPQRA ESS+AICSCHKEAKVG
Sbjct: 241 GSYYIALDESHLKDLILEHAPPPPAIAEFAIANLIKMGFPQRAAESSVAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
            GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPI+PFDEVS  L+ D +++L
Sbjct: 301 DGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSMSLYSDQQNKL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PK CFGCQ++   P  GN PG+RV+CPKCKQHFCLDCDIYIHESLHNCPGC+S R  K  
Sbjct: 361 PKACFGCQQSVLGP--GNKPGLRVACPKCKQHFCLDCDIYIHESLHNCPGCDSTRHSKIP 418

Query: 421 TSDD 425
            +++
Sbjct: 421 AANE 418

The following BLAST results are available for this feature:
BLAST of CmaCh01G005360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TF2H2_ARATH2.2e-18774.76General transcription factor IIH subunit 2 OS=Arabidopsis thaliana GN=GTF2H2 PE=... [more]
TF2H2_BOVIN1.2e-8941.92General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1[more]
TF2H2_HUMAN1.6e-8942.42General transcription factor IIH subunit 2 OS=Homo sapiens GN=GTF2H2 PE=1 SV=1[more]
T2H2L_HUMAN2.1e-8942.42General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H... [more]
TF2H2_MOUSE7.9e-8942.07General transcription factor IIH subunit 2 OS=Mus musculus GN=Gtf2h2 PE=1 SV=1[more]
BLAST of CmaCh01G005360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPM4_CUCSA7.9e-23793.40Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169080 PE=4 SV=1[more]
F6GTZ1_VITVI6.3e-20281.15Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03170 PE=4 SV=... [more]
W9RVY0_9ROSA1.1e-20180.95General transcription factor IIH subunit 2 OS=Morus notabilis GN=L484_014405 PE=... [more]
A0A061GUH7_THECC1.4e-20179.47General transcription factor II H2 isoform 1 OS=Theobroma cacao GN=TCM_041075 PE... [more]
M5VYB6_PRUPE9.1e-20179.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006259mg PE=4 SV=1[more]
BLAST of CmaCh01G005360 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05055.11.2e-18874.76 general transcription factor II H2[more]
BLAST of CmaCh01G005360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451946|ref|XP_004143721.1|1.1e-23693.40PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus][more]
gi|659073175|ref|XP_008467294.1|1.1e-23693.63PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo][more]
gi|694420768|ref|XP_009338275.1|5.1e-20581.15PREDICTED: general transcription factor IIH subunit 2 isoform X1 [Pyrus x bretsc... [more]
gi|657952633|ref|XP_008358377.1|3.7e-20380.67PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH subunit 2 [Malu... [more]
gi|470148666|ref|XP_004309875.1|4.8e-20379.01PREDICTED: general transcription factor IIH subunit 2 [Fragaria vesca subsp. ves... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR004595TFIIH_C1-like_dom
IPR007087Zinc finger, C2H2
IPR007198Ssl1-like
IPR012170TFIIH_SSL1/p44
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006281 DNA repair
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
cellular_component GO:0005675 holo TFIIH complex
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G005360.1CmaCh01G005360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 84..260
score: 8.6
IPR002035von Willebrand factor, type APROFILEPS50234VWFAcoord: 86..225
score:
IPR002035von Willebrand factor, type AunknownSSF53300vWA-likecoord: 82..249
score: 8.34
IPR004595TFIIH C1-like domainPFAMPF07975C1_4coord: 364..413
score: 4.2
IPR004595TFIIH C1-like domainSMARTSM01047C1_4_2coord: 363..413
score: 5.2
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 386..406
scor
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 90..280
score: 4.1
IPR012170TFIIH subunit Ssl1/p44PIRPIRSF015919TFIIH_SSL1coord: 1..414
score: 2.0E
IPR012170TFIIH subunit Ssl1/p44PANTHERPTHR12695:SF2GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 1..423
score: 6.9E
IPR012170TFIIH subunit Ssl1/p44TIGRFAMsTIGR00622TIGR00622coord: 302..413
score: 9.3
NoneNo IPR availableGENE3DG3DSA:3.10.370.10coord: 358..412
score: 9.4
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 1..423
score: 6.9E
NoneNo IPR availableunknownSSF57889Cysteine-rich domaincoord: 337..412
score: 1.99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G005360ClCG03G002310Watermelon (Charleston Gray)cmawcgB404
CmaCh01G005360CmoCh01G005670Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G005360Cp4.1LG02g12850Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G005360Cla97C03G053320Watermelon (97103) v2cmawmbB467
CmaCh01G005360Carg12311Silver-seed gourdcarcmaB0613
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G005360Cucurbita pepo (Zucchini)cmacpeB470
CmaCh01G005360Cucurbita pepo (Zucchini)cmacpeB483
CmaCh01G005360Cucurbita pepo (Zucchini)cmacpeB500
CmaCh01G005360Bottle gourd (USVL1VR-Ls)cmalsiB398
CmaCh01G005360Bottle gourd (USVL1VR-Ls)cmalsiB401
CmaCh01G005360Bottle gourd (USVL1VR-Ls)cmalsiB417
CmaCh01G005360Cucumber (Gy14) v2cgybcmaB110
CmaCh01G005360Cucumber (Gy14) v2cgybcmaB775
CmaCh01G005360Melon (DHL92) v3.6.1cmamedB447
CmaCh01G005360Melon (DHL92) v3.6.1cmamedB451
CmaCh01G005360Silver-seed gourdcarcmaB0422
CmaCh01G005360Silver-seed gourdcarcmaB0470
CmaCh01G005360Silver-seed gourdcarcmaB1018
CmaCh01G005360Cucumber (Chinese Long) v3cmacucB0518
CmaCh01G005360Cucumber (Chinese Long) v3cmacucB0578
CmaCh01G005360Watermelon (97103) v2cmawmbB459
CmaCh01G005360Wax gourdcmawgoB0582
CmaCh01G005360Wax gourdcmawgoB0587
CmaCh01G005360Wax gourdcmawgoB0589
CmaCh01G005360Wax gourdcmawgoB0595
CmaCh01G005360Cucurbita maxima (Rimu)cmacmaB220
CmaCh01G005360Cucurbita maxima (Rimu)cmacmaB417
CmaCh01G005360Cucumber (Gy14) v1cgycmaB0611
CmaCh01G005360Cucurbita moschata (Rifu)cmacmoB458
CmaCh01G005360Cucurbita moschata (Rifu)cmacmoB474
CmaCh01G005360Cucurbita moschata (Rifu)cmacmoB476
CmaCh01G005360Wild cucumber (PI 183967)cmacpiB434
CmaCh01G005360Wild cucumber (PI 183967)cmacpiB489
CmaCh01G005360Cucumber (Chinese Long) v2cmacuB431
CmaCh01G005360Melon (DHL92) v3.5.1cmameB387
CmaCh01G005360Melon (DHL92) v3.5.1cmameB391
CmaCh01G005360Watermelon (Charleston Gray)cmawcgB398
CmaCh01G005360Watermelon (Charleston Gray)cmawcgB399
CmaCh01G005360Watermelon (97103) v1cmawmB429
CmaCh01G005360Watermelon (97103) v1cmawmB454
CmaCh01G005360Watermelon (97103) v1cmawmB455