Cla97C03G053320 (gene) Watermelon (97103) v2
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGTTGTGCAAACTTGTATGTCAGGAACTTCTTTGATCAATATCCACTTAGTCAATTTGGTTGGTGACTATAAAAAATGGAGTGGCTCATTGCTTAACAGATCTTGGCGGAAGTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGGTATGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAGTCTTGTATCCTGCTCCTAATTCCTGTGATCTTGGGGACATCGTGGACTTTGCCACAATGAGAGAAATTAAAATGGCTATTTATTCTATTTTTTCAGTTGACCAGCTAATAGAACTGACCACAAAGGAAGCTTAACAGAGAATACAGTCATAAGACAGAAGTTCAAAGTAAAATTACCATAGCAAGATTCTATTTGACGTTTGTATATATGGAAGTTCTGTTTCCTAAATCTTTGTGAAATGCTTTCCTTTTGTGTACAGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTGTGAGCTGCTAACGAAGTATCAATCTGTGGATTCACACTTATCTCCTCACCCCATTTGGCTAGGTCGAATCATCATCTCTGTCCAATTATACTACTTGATGAAGTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAAATCTCTTTATGGTAATTATTGTCTTCTAATAGTATAATATGCACATCGAGTTAGACAGCATTTTGTGTCAGGGGATGTCTTAAAATCAGGTAAAGTGAAAATTAAGAAGATACTCATTTTTTCTTTCCTTCAAGGAGCTTTTTTAATGTTTGGTCATTCTTCAATACTAATTATGTGCTGCATTAGTACTGCAACATGATGACTTTGCAAACTGATTTTGCTCTTTCTGTGTTGAGTGACTTCTTTTTGTTACATTGTTCATATGTGATTATGTTTAAGATAATAGAAGCAACTTATATTTGTGGCATGCAAGTATGAACAAATGTGGATGAGATTTTGCCCCTTTGTAATTTGCTGAATTGAACTTTTGACCACCCTTCAATCATTGCATACTCATTCAAAAGTACTTTTCATTTTAGGCACAGGTAACAACCGAGGCATCTGTATTTCTTGCACAAAGGGCAAACAACACTTCCTATCTTGATTTTGATATTTAGATTCACAAGAGCTTGCACAATTGTCCTGGCTGCGAGAGTTTCAGGCGTCCCAAATTGGCGACTTCTGACAAATGA ATGGCTATCTTGGCGGAAGTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAATTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGATTCACAAGAGCTTGCACAATTGTCCTGGCTGCGAGAGTTTCAGGCGTCCCAAATTGGCGACTTCTGACAAATGA ATGGCTATCTTGGCGGAAGTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAATTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGATTCACAAGAGCTTGCACAATTGTCCTGGCTGCGAGAGTTTCAGGCGTCCCAAATTGGCGACTTCTGACAAATGA MAILAEVRSLKALVGKLEYLGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTCPRYKAQFMIHMIRDINYQKFALAAKKGSWTLIHKSLHNCPGCESFRRPKLATSDK
BLAST of Cla97C03G053320 vs. NCBI nr
Match: XP_004143721.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_5G169080 [Cucumis sativus]) HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17 Identity = 65/179 (36.31%), Postives = 83/179 (46.37%), Query Frame = 0
BLAST of Cla97C03G053320 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo]) HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16 Identity = 64/183 (34.97%), Postives = 79/183 (43.17%), Query Frame = 0
BLAST of Cla97C03G053320 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16 Identity = 64/182 (35.16%), Postives = 78/182 (42.86%), Query Frame = 0
BLAST of Cla97C03G053320 vs. NCBI nr
Match: XP_022998882.1 (general transcription factor IIH subunit 2 [Cucurbita maxima]) HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16 Identity = 64/182 (35.16%), Postives = 78/182 (42.86%), Query Frame = 0
BLAST of Cla97C03G053320 vs. NCBI nr
Match: XP_022157930.1 (general transcription factor IIH subunit 2 [Momordica charantia]) HSP 1 Score: 93.2 bits (230), Expect = 7.4e-16 Identity = 62/179 (34.64%), Postives = 82/179 (45.81%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TrEMBL
Match: tr|A0A0A0KPM4|A0A0A0KPM4_CUCSA (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 6.8e-18 Identity = 65/179 (36.31%), Postives = 83/179 (46.37%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TrEMBL
Match: tr|A0A1S3CUH8|A0A1S3CUH8_CUCME (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16 Identity = 64/183 (34.97%), Postives = 79/183 (43.17%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TrEMBL
Match: tr|A0A2I4EJC1|A0A2I4EJC1_9ROSI (General transcription factor IIH subunit OS=Juglans regia OX=51240 GN=LOC108990087 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12 Identity = 58/181 (32.04%), Postives = 75/181 (41.44%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TrEMBL
Match: tr|A0A2P5AFI3|A0A2P5AFI3_PARAD (General transcription factor IIH subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_337440 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12 Identity = 62/195 (31.79%), Postives = 82/195 (42.05%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TrEMBL
Match: tr|A0A2P5E4E9|A0A2P5E4E9_9ROSA (General transcription factor IIH subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_234280 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12 Identity = 63/194 (32.47%), Postives = 81/194 (41.75%), Query Frame = 0
BLAST of Cla97C03G053320 vs. Swiss-Prot
Match: sp|Q9ZVN9|TF2H2_ARATH (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.4e-12 Identity = 58/195 (29.74%), Postives = 78/195 (40.00%), Query Frame = 0
BLAST of Cla97C03G053320 vs. TAIR10
Match: AT1G05055.1 (general transcription factor II H2) HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13 Identity = 58/195 (29.74%), Postives = 78/195 (40.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |