Carg12311 (gene) Silver-seed gourd

Overview
NameCarg12311
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGeneral transcription factor IIH subunit
LocationCucurbita_argyrosperma_scaffold_074 : 241970 .. 244539 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCTCTTCTCTTCACACTCGAATCCCACCCATCAAATTCATTCCCACCTCAGTTCTTTATTATCGATTCCTCAGCGCACCTTCAATCCCCGAATTGGCCCTCATTTTTCCATTTCTTTTGACCTACCTACTGTTACTCTTTAACTCCCCTAATGCTGCTTGTTCTCCAAGTATAGATTGTTTTCGATATTGGGGGTTCATCAATTTGATCTCATTTCAAAACCCTCAAGAAATTCCTTAGGAAAAACCATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGTTGGTTTCCCTTTTCATTCATGTCTCTATTACTTCCTGCTATTTGATTTAATTTGACCTATGCCTTCGCTTTTGATGATCTTATTGAGAAAGGGGATTTGTGATGTTCATCAAGTTAAATGCATAGAATCTCTGCTGAAATGTTTTTCATTGAAAATATGGAGTAGATCACAAAACAAACAAACTTTCAAGTAATCTTAATTTCCAGAAACCAAATACTAACAATCAAATGATTATCATCAAATGATTATCAAACATGGACTTCTCCCAAGAACTATAATGTGGTATAATCTCATTTTTCCCAACTTGTTTGTTCTCTGATTATGTTAGGAAGTATTTTGTGAATGAGTTTAGTTTAGAGCATGAATTTCTGTCCATAGAAACTGTAAAAGTGATGGAATGGTGGTTTTTCCTTTTCTATTTCTCTTATTTTGCGTATCTCTCGACGTGCAGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGGTGAGTTTAATTGGATGTGTCGGTTTCCTAAAATGAAGAACTAACCATAAAATTACTGCAGCAAGACTCTGTTGATGTTTTTATATGGGAGTACTTCGCTAAATGTTTGTGAAAAACTTGCCTTTTTTGTAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTAAGAACTCAAATGAACAGTATGTTTGGAATTATGGTCTTCTAGTAATATAATATACGTGTCGGATTAGTGAACGTGATATCTTAAAATCAGGTGGAGTGGGAAGAACAGACCTTCTTTTGTCTTTCTTACTCGGGTTTCTTTAAGCTGGGTGCTATTTTCGAATGGCCCATAATGTTTGATTCCTAAAGCAAAGAATGTTGTGTTTAAGAGAAACTTCGACGTCTTCTGTTCACGGTTTGGTCGTTCTTCATTACTAATTTTGTGCTGCATCAGTACTATGCTGAAACAATCTCATGGGGATTTAAGTTGTCTCTGTATTGGGTGACTTAAGATTATTACATTGCTCATATGTGATCCTGTTTAAGGCAATAGAAGCAACTTTATGAAGAAATATGGATGATTTCTGCACTTTCATCGAACTTTTGACTCATTGAAATGTACATTCTGTTCATATTAGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

mRNA sequence

TCATCTCTTCTCTTCACACTCGAATCCCACCCATCAAATTCATTCCCACCTCAGTTCTTTATTATCGATTCCTCAGCGCACCTTCAATCCCCGAATTGGCCCTCATTTTTCCATTTCTTTTGACCTACCTACTGTTACTCTTTAACTCCCCTAATGCTGCTTGTTCTCCAAGTATAGATTGTTTTCGATATTGGGGGTTCATCAATTTGATCTCATTTCAAAACCCTCAAGAAATTCCTTAGGAAAAACCATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

Coding sequence (CDS)

ATGAACAATGGCGAAAATCGGCGATTAAATGGTGAGGCCGAAGAAGAAGACGATGATGACGATGCCAATGGCGGAATGGCGGCCTGGGAAAGGACTTATGCCGATGATAGGTCGTGGGAAGCCCTACAAGAGGACGAGTCTGGGCTTCTTCGGCCGATTGACAATAAGGCCATTTTCCATGCCCAATATCGCAGACGTCTTCGTTCACTTTCTTCTTTAGCAACCACTGCTCGAATTCAAAAGGGTCTTATTCGCTATCTCTATGTCGTCATTGATTTCTCCAGGGCAGCTGCGGAAATGGATTTTCGACCGAGTCGAATGGCTGTGGTTGCAAAACATGTGGAAGCTTTTGTCAGGGAATTCTTTGACCAAAATCCTCTCAGTCAGATTGGTTTGGTGACTATAAAGGATGGAGTTGCTCATAGCTTAACAGATCTTGGTGGAAGTCCTGAGTCCCATGTTAAAGCATTAATGGGGAAACTGGAATGCTCAGGTGAAGCATCCTTGCAGAATGGTCTGGATCTTGTTTGTGGCTATCTAAGTCAAATACCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTCAATTCCTGTGATCCTGGAGATATAATGGAGACAGTTCAGAAATGCAAAACATCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCTGAACTTTTTATATGCAGACATCTCTGTCAGGAAACCGGTGGCTCGTACTCGGTCGCATTGGATGAGTCCCATTTCAAAGAGTTGCTATTAGAGCACGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTGATCAAGATGGGGTTTCCACAAAGAGCAGGGGAGAGTTCTATTGCAATTTGTTCGTGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCTCGAGTTTGCGAGCTGCCAACTGAGTGTCGAATTTGTGGATTGACACTTATTTCTTCACCTCATTTGGCTAGGTCGTATCATCATCTCTTTCCGATTATACCATTTGATGAAGTTTCTGATAAACTATTTCATGATCCACGACATCAACTACCGAAAGTTTGCTTTGGCTGCCAAGAAAACTTCACAAACCCTGGTACAGGTAACAGCCCAGGCATCCGAGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGCCCTGGCTGTGAGAGTTTCAGACGTCCCAAATCAGCGACTTCCGATGATTGA

Protein sequence

MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSATSDD
Homology
[Close]
BLAST of Carg12311 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 852.4 bits (2201), Expect = 6.4e-244
Identity = 423/424 (99.76%), Postives = 424/424 (100.00%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]
BLAST of Carg12311 vs. NCBI nr
Match: XP_022998882.1 (general transcription factor IIH subunit 2 [Cucurbita maxima])

HSP 1 Score: 850.1 bits (2195), Expect = 3.2e-243
Identity = 422/424 (99.53%), Postives = 423/424 (99.76%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH
Sbjct: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG
Sbjct: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
           TSDD
Sbjct: 421 TSDD 424

[Close]
BLAST of Carg12311 vs. NCBI nr
Match: XP_022157930.1 (general transcription factor IIH subunit 2 [Momordica charantia])

HSP 1 Score: 812.8 bits (2098), Expect = 5.6e-232
Identity = 398/424 (93.87%), Postives = 412/424 (97.17%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGE  RLNGE  XXXXXXXXXXX+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGEGSRLNGEADXXXXXXXXXXXLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSS+ATTARIQKGLIRYLY+VIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSIATTARIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSALNSCDPGDIMET+QKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETIQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+ +DPRH+L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLNDPRHRL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  N GTGNS GIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA
Sbjct: 361 PKVCFGCQESLMNSGTGNSQGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDD 425
            S++
Sbjct: 421 ASNE 424

[Close]
BLAST of Carg12311 vs. NCBI nr
Match: XP_004143721.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_5G169080 [Cucumis sativus])

HSP 1 Score: 804.7 bits (2077), Expect = 1.5e-229
Identity = 392/424 (92.45%), Postives = 407/424 (95.99%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 423

[Close]
BLAST of Carg12311 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 804.7 bits (2077), Expect = 1.5e-229
Identity = 393/424 (92.69%), Postives = 406/424 (95.75%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDD 425
           T D+
Sbjct: 421 TFDE 423

[Close]
BLAST of Carg12311 vs. TAIR10
Match: AT1G05055.1 (general transcription factor II H2)

HSP 1 Score: 646.7 bits (1667), Expect = 9.7e-186
Identity = 304/394 (77.16%), Postives = 343/394 (87.06%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WER Y DDRSWE LQEDESGLLRPIDN AI+HAQYRRRLR LS+ A   RIQKGLIRYLY
Sbjct: 26  WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           +VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFFDQNPLSQIGLV+IK+GVAH+LTDLGG
Sbjct: 86  IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 149 SPESHVKALMGKLECSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDIME 208
           SPE+H+KALMGKLE  G++SLQN L+LV  +L+Q+PSYGHREVLILYSAL +CDPGDIME
Sbjct: 146 SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 209 TVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAD 268
           T+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+DE H K+LLLEHAPPPPAIA+
Sbjct: 206 TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 269 SAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLIS 328
            A+ NLIKMGFPQRA E S+AICSCHKE K+G GY CPRCKARVC+LPTEC ICGLTL+S
Sbjct: 266 FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 329 SPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLPKVCFGCQENFTNPGTGNSPGIRVSCP 388
           SPHLARSYHHLFPI PFDEV +    +D R +L K CFGCQ++    G GN P   V+C 
Sbjct: 326 SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLI--GAGNKPVPCVTCR 385

Query: 389 KCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 386 KCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

[Close]
BLAST of Carg12311 vs. Swiss-Prot
Match: sp|Q9ZVN9|TF2H2_ARATH (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 1.7e-184
Identity = 304/394 (77.16%), Postives = 343/394 (87.06%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WER Y DDRSWE LQEDESGLLRPIDN AI+HAQYRRRLR LS+ A   RIQKGLIRYLY
Sbjct: 26  WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           +VIDFSRAAAEMDFRPSRMA++AKHVEAF+REFFDQNPLSQIGLV+IK+GVAH+LTDLGG
Sbjct: 86  IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145

Query: 149 SPESHVKALMGKLECSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDIME 208
           SPE+H+KALMGKLE  G++SLQN L+LV  +L+Q+PSYGHREVLILYSAL +CDPGDIME
Sbjct: 146 SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205

Query: 209 TVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAD 268
           T+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+DE H K+LLLEHAPPPPAIA+
Sbjct: 206 TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265

Query: 269 SAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLIS 328
            A+ NLIKMGFPQRA E S+AICSCHKE K+G GY CPRCKARVC+LPTEC ICGLTL+S
Sbjct: 266 FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325

Query: 329 SPHLARSYHHLFPIIPFDEV-SDKLFHDPRHQLPKVCFGCQENFTNPGTGNSPGIRVSCP 388
           SPHLARSYHHLFPI PFDEV +    +D R +L K CFGCQ++    G GN P   V+C 
Sbjct: 326 SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLI--GAGNKPVPCVTCR 385

Query: 389 KCKQHFCLDCDIYIHESLHNCPGCESFRRPKSAT 422
           KCK +FCLDCDIYIHESLHNCPGCES  RPKS +
Sbjct: 386 KCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVS 417

[Close]
BLAST of Carg12311 vs. Swiss-Prot
Match: sp|Q2TBV5|TF2H2_BOVIN (General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 7.3e-90
Identity = 166/396 (41.92%), Postives = 240/396 (60.61%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA--------GESSIAICSCHKEAKVG---GGYTCPRCKARVCEL 328
           ++S   +LI+MGFPQ           + S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ CQ    +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYACQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]
BLAST of Carg12311 vs. Swiss-Prot
Match: sp|A0JN27|TF2H2_RAT (General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 8.1e-89
Identity = 167/397 (42.07%), Postives = 240/397 (60.45%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA------GESSIAICSCH------KEAKVGGGYTCPRCKARVCE 328
           + S   +LI+MGFPQ         ++  +    H      +     GGY CP+C+A+ CE
Sbjct: 251 SGSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 329 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNP 388
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + +   R      C+GCQ    + 
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYKGER-----FCYGCQGELKDQ 370

Query: 389 GTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                      C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 HV-------YVCTVCRNVFCVDCDVFVHDSLHCCPGC 386

[Close]
BLAST of Carg12311 vs. Swiss-Prot
Match: sp|O74995|TFH47_SCHPO (General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssl1 PE=1 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.1e-88
Identity = 167/395 (42.28%), Postives = 231/395 (58.48%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y   RSW+ +QED  G L  +    I   + +R LR       T  +Q+G+IR++ 
Sbjct: 39  WEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRD------TTPLQRGIIRHMV 98

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           +V+D S +  E DF   R  +  K+   FV EFF+QNP+SQ+ ++ + DG+AH +TDL G
Sbjct: 99  LVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHG 158

Query: 149 SPESHVKALMGKLECSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDIME 208
           +P+SH++ L    +CSG  SLQN L++    LS I S+G REVLI++ ++ S DPGDI +
Sbjct: 159 NPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFK 218

Query: 209 TVQKCKTSKIRCSVIGLTAELFICRHLCQETGGS----YSVALDESHFKELLLEHA-PPP 268
           T+       IR  ++GL AE+ IC+ +C +T  S    Y V + E HF+ELLLE   PP 
Sbjct: 219 TIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPA 278

Query: 269 PAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICG 328
              A +   +L+ MGFP +  E   ++C+CH      GG+ CPRCKA+VC LP EC  C 
Sbjct: 279 TDSAKTTDASLVMMGFPSKVVEQLPSLCACH-SIPSRGGFHCPRCKAKVCTLPIECPSCS 338

Query: 329 LTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKV--CFGCQENFTNPGTG---- 388
           L LI S HLARSYHHLFP+  + E+       P    PK   CF CQ  F  P       
Sbjct: 339 LVLILSTHLARSYHHLFPLKNWSEI-------PWSANPKSTHCFACQLPFPKPPVSPFDE 398

Query: 389 NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCE 413
           ++  +R +CP CK HFCLDCD++ HE LH C GC+
Sbjct: 399 STSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417

[Close]
BLAST of Carg12311 vs. Swiss-Prot
Match: sp|Q9JIB4|TF2H2_MOUSE (General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.7e-86
Identity = 164/397 (41.31%), Postives = 237/397 (59.70%), Query Frame = 0 

Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIFHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDE+G L+      +F A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  VVIDFSRAAAEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHSLTDLGG 148
           VV+D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGEASLQNGLDLVCGYLSQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C GE SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAELFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  P    
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPXXXX 250

Query: 269 ADSAMPNLIKMGFPQRA------GESSIAICSCH------KEAKVGGGYTCPRCKARVCE 328
             S   +LI+MGFPQ         ++  +    H      +     GGY CP+C+A+ CE
Sbjct: 251 XSSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 329 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCFGCQENFTNP 388
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+S + +   R      C+GCQ    + 
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISLEEYKGER-----FCYGCQGELKDQ 370

Query: 389 GTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                      C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 HV-------YVCTVCQNVFCVDCDVFVHDSLHCCPGC 386

[Close]
BLAST of Carg12311 vs. TrEMBL
Match: tr|A0A1S3CUH8|A0A1S3CUH8_CUCME (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 804.7 bits (2077), Expect = 1.0e-229
Identity = 393/424 (92.69%), Postives = 406/424 (95.75%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDD 425
           T D+
Sbjct: 421 TFDE 423

[Close]
BLAST of Carg12311 vs. TrEMBL
Match: tr|A0A0A0KPM4|A0A0A0KPM4_CUCSA (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 804.7 bits (2077), Expect = 1.0e-229
Identity = 392/424 (92.45%), Postives = 407/424 (95.99%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNGENRRLNGE   XXXXXXX   +AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGE-ADXXXXXXXANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQIGLVTIKDG A+ LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           PKVCFGCQE+  NP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK A
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDD 425
           TSD+
Sbjct: 421 TSDE 423

[Close]
BLAST of Carg12311 vs. TrEMBL
Match: tr|A0A2P4M9Z7|A0A2P4M9Z7_QUESU (General transcription factor IIH subunit OS=Quercus suber OX=58331 GN=CFP56_75783 PE=3 SV=1)

HSP 1 Score: 735.7 bits (1898), Expect = 5.8e-209
Identity = 342/419 (81.62%), Postives = 380/419 (90.69%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNG  RRLNGE             + AWERTYAD+RSWE+LQEDESGLLRP+DNK ++H
Sbjct: 1   MNNGNGRRLNGETEEDDDDEGSEGDLDAWERTYADERSWESLQEDESGLLRPVDNKTLYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRR+RSLSS ATT+RIQKGLIRYLY+V+D SRAAAEMD+RPSRMAVVAKHVEAF+RE
Sbjct: 61  AQYRRRIRSLSSQATTSRIQKGLIRYLYIVVDLSRAAAEMDYRPSRMAVVAKHVEAFIRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQ+GLVTIKDG+AH LTDLGGSPESHVKALMGKLECSGE+SLQN LDLV GYL
Sbjct: 121 FFDQNPLSQLGLVTIKDGIAHCLTDLGGSPESHVKALMGKLECSGESSLQNALDLVQGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
           +QIPSYGHREVLILYSAL++CDPGDI+ET+QKCK SK+RCSVIGL+AE+FIC+HLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDILETIQKCKKSKMRCSVIGLSAEIFICKHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVA+DESHFKEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVAMDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPI+PFDEVS  + +DP ++L
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSSSVLNDPHNRL 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKS 420
           P+ CFGCQ++  NP  GN P +RV+CPKCKQHFCLDCDIYIHESLHNCPGCESFR  KS
Sbjct: 361 PRSCFGCQQSLPNP--GNKPSLRVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHLKS 417

[Close]
BLAST of Carg12311 vs. TrEMBL
Match: tr|A0A2I4EJC1|A0A2I4EJC1_9ROSI (General transcription factor IIH subunit OS=Juglans regia OX=51240 GN=LOC108990087 PE=3 SV=1)

HSP 1 Score: 705.7 bits (1820), Expect = 6.4e-200
Identity = 343/424 (80.90%), Postives = 381/424 (89.86%), Query Frame = 0 

Query: 1   MNNGENRRLNGEXXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60
           MNNG  +R NG XXXXXXXXXXXX    W+ TYAD+RSWE+LQEDESGLLRPIDNK ++H
Sbjct: 1   MNNGVGKRWNGXXXXXXXXXXXXXGPDGWQITYADERSWESLQEDESGLLRPIDNKILYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRR+RSLSS ATTARIQKGLIRYL+V+IDFSRAA E DFRPSRM VVAK VEAF+RE
Sbjct: 61  AQYRRRIRSLSSQATTARIQKGLIRYLFVIIDFSRAAGETDFRPSRMVVVAKLVEAFIRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180
           FFDQNPLSQ+GLV++KDGVA  LT+LGGSPESHVKALMGKLECSGE+SLQN LDLV GYL
Sbjct: 121 FFDQNPLSQLGLVSVKDGVAQCLTELGGSPESHVKALMGKLECSGESSLQNALDLVHGYL 180

Query: 181 SQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240
            QIPSYGHREVL+LYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AELFIC+HLCQETG
Sbjct: 181 KQIPSYGHREVLVLYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAELFICKHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300
           GSYSVALDE+H KEL+LEHAPPPPAIA+ A+ NL+KMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDEAHLKELILEHAPPPPAIAEFAIANLLKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360
           GGYTCPRCKARVCELPTECR+CGLTLISSPHLARSYHHLFP++PFDEV     +D  ++ 
Sbjct: 301 GGYTCPRCKARVCELPTECRVCGLTLISSPHLARSYHHLFPVVPFDEVPPSFLNDAHNRS 360

Query: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420
           P+ CFGCQ++  NP  GN PG+RVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR  KSA
Sbjct: 361 PRSCFGCQQSLLNP--GNKPGLRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKSA 420

Query: 421 TSDD 425
            + +
Sbjct: 421 IASE 422

[Close]
BLAST of Carg12311 vs. TrEMBL
Match: tr|A0A2P5E4E9|A0A2P5E4E9_9ROSA (General transcription factor IIH subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_234280 PE=3 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 1.4e-199
Identity = 354/426 (83.10%), Postives = 385/426 (90.38%), Query Frame = 0 

Query: 1   MNNGENRRLNGE-XXXXXXXXXXXXXMAAWERTYADDRSWEALQEDESGLLRPIDNKAIF 60
           MNNGE RRLNGE XXXXXXXXXXXXX+ AWERTYAD+RSWE+LQEDESGLLRPIDNKA++
Sbjct: 1   MNNGEERRLNGEXXXXXXXXXXXXXXLEAWERTYADERSWESLQEDESGLLRPIDNKALY 60

Query: 61  HAQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVR 120
           H+QYRRRLR+    A+  RIQKGLIRYL+VVID S+AAAEMDFRPSR AVVAKHVE F+R
Sbjct: 61  HSQYRRRLRT----ASATRIQKGLIRYLFVVIDLSKAAAEMDFRPSRRAVVAKHVEVFIR 120

Query: 121 EFFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGY 180
           EFFDQNPLSQIGLVTIKDGVA+ LTDLGGSPESHVKALMGKLECSGE+S+QN LDLV GY
Sbjct: 121 EFFDQNPLSQIGLVTIKDGVANCLTDLGGSPESHVKALMGKLECSGESSIQNALDLVHGY 180

Query: 181 LSQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQET 240
           L+QIPSYGHREVLILYSAL++CDPGDIMET+Q CK SKIRCSVIGL+AE+FIC+HLCQET
Sbjct: 181 LNQIPSYGHREVLILYSALSTCDPGDIMETIQTCKKSKIRCSVIGLSAEIFICKHLCQET 240

Query: 241 GGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKV 300
           GGSYSVALDESHFKEL+LEHAPPPPAIA+ A+ NLIKMGFPQRA ESSIAICSCHKEAK 
Sbjct: 241 GGSYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKA 300

Query: 301 GGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQ 360
           GGGYTCPRCKARVCELPTECR CGLTLISSPHLARSYHHLFPI+PFDEVS  L +DP  +
Sbjct: 301 GGGYTCPRCKARVCELPTECRTCGLTLISSPHLARSYHHLFPIVPFDEVSLSLLNDPYRK 360

Query: 361 LPKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR--RP 420
           LP+ CFGCQ   T  G GN PG RVSCPKCKQHFCLDCDIYIHESLHNCPGCES R  +P
Sbjct: 361 LPRACFGCQH--TLLGAGNKPGPRVSCPKCKQHFCLDCDIYIHESLHNCPGCESARHSKP 420

Query: 421 KSATSD 424
            +AT +
Sbjct: 421 VAATEE 420

The following BLAST results are available for this feature:
BLAST of Carg12311 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949453.16.4e-24499.76general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 ... [more]
XP_022998882.13.2e-24399.53general transcription factor IIH subunit 2 [Cucurbita maxima][more]
XP_022157930.15.6e-23293.87general transcription factor IIH subunit 2 [Momordica charantia][more]
XP_004143721.11.5e-22992.45PREDICTED: general transcription factor IIH subunit 2 [Cucumis sativus] >KGN5037... [more]
XP_008467294.11.5e-22992.69PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo][more]
BLAST of Carg12311 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05055.19.7e-18677.16general transcription factor II H2[more]
BLAST of Carg12311 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZVN9|TF2H2_ARATH1.7e-18477.16General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT... [more]
sp|Q2TBV5|TF2H2_BOVIN7.3e-9041.92General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 ... [more]
sp|A0JN27|TF2H2_RAT8.1e-8942.07General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2... [more]
sp|O74995|TFH47_SCHPO3.1e-8842.28General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomy... [more]
sp|Q9JIB4|TF2H2_MOUSE1.7e-8641.31General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE... [more]
BLAST of Carg12311 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CUH8|A0A1S3CUH8_CUCME1.0e-22992.69General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674... [more]
tr|A0A0A0KPM4|A0A0A0KPM4_CUCSA1.0e-22992.45General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169... [more]
tr|A0A2P4M9Z7|A0A2P4M9Z7_QUESU5.8e-20981.62General transcription factor IIH subunit OS=Quercus suber OX=58331 GN=CFP56_7578... [more]
tr|A0A2I4EJC1|A0A2I4EJC1_9ROSI6.4e-20080.90General transcription factor IIH subunit OS=Juglans regia OX=51240 GN=LOC1089900... [more]
tr|A0A2P5E4E9|A0A2P5E4E9_9ROSA1.4e-19983.10General transcription factor IIH subunit OS=Trema orientalis OX=63057 GN=TorRG33... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006351transcription, DNA-templated
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR007198Ssl1-like
IPR012170TFIIH_SSL1/p44
IPR013083Znf_RING/FYVE/PHD
IPR036465vWFA_dom_sf
IPR004595TFIIH_C1-like_dom
IPR002035VWF_A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006281 DNA repair
cellular_component GO:0000439 core TFIIH complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12311-RACarg12311-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 84..260
e-value: 8.5E-12
score: 55.2
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 86..225
score: 8.932
IPR004595TFIIH C1-like domainSMARTSM01047C1_4_2coord: 363..413
e-value: 5.2E-21
score: 85.8
IPR004595TFIIH C1-like domainPFAMPF07975C1_4coord: 364..413
e-value: 2.2E-19
score: 69.3
IPR036465von Willebrand factor A-like domain superfamilyGENE3DG3DSA:3.40.50.410coord: 80..265
e-value: 3.5E-69
score: 234.1
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILYSSF53300vWA-likecoord: 82..249
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 349..411
e-value: 1.4E-18
score: 68.7
IPR012170TFIIH subunit Ssl1/p44PIRSFPIRSF015919TFIIH_SSL1coord: 1..414
e-value: 6.2E-161
score: 533.8
IPR012170TFIIH subunit Ssl1/p44TIGRFAMTIGR00622TIGR00622coord: 302..413
e-value: 9.3E-38
score: 127.4
IPR012170TFIIH subunit Ssl1/p44PANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 20..413
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 90..280
e-value: 1.2E-85
score: 286.1
IPR007198Ssl1-likeCDDcd01453vWA_transcription_factor_IIH_typecoord: 82..264
e-value: 9.85576E-102
score: 302.327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableSUPERFAMILYSSF57889Cysteine-rich domaincoord: 337..412
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 386..406

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12311ClCG03G002310Watermelon (Charleston Gray)carwcgB0436
Carg12311CmaCh01G005360Cucurbita maxima (Rimu)carcmaB0613
Carg12311CmoCh01G005670Cucurbita moschata (Rifu)carcmoB0596
Carg12311Cp4.1LG02g12850Cucurbita pepo (Zucchini)carcpeB0622
Carg12311Cla97C03G053320Watermelon (97103) v2carwmbB0467
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12311Cucumber (Chinese Long) v2carcuB0472
Carg12311Cucumber (Chinese Long) v2carcuB0474
Carg12311Cucumber (Chinese Long) v3carcucB0474
Carg12311Cucumber (Chinese Long) v3carcucB0476
Carg12311Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12311Bottle gourd (USVL1VR-Ls)carlsiB402
Carg12311Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12311Melon (DHL92) v3.5.1carmeB0447
Carg12311Melon (DHL92) v3.5.1carmeB0449
Carg12311Melon (DHL92) v3.6.1carmedB0449
Carg12311Melon (DHL92) v3.6.1carmedB0451
Carg12311Watermelon (Charleston Gray)carwcgB0432
Carg12311Watermelon (Charleston Gray)carwcgB0434
Carg12311Watermelon (Charleston Gray)carwcgB0435
Carg12311Watermelon (97103) v1carwmB0439
Carg12311Watermelon (97103) v1carwmB0440
Carg12311Watermelon (97103) v1carwmB0443
Carg12311Watermelon (97103) v1carwmB0444
Carg12311Watermelon (97103) v2carwmbB0465
Carg12311Wax gourdcarwgoB0528
Carg12311Wax gourdcarwgoB0531
Carg12311Wax gourdcarwgoB0532
Carg12311Wax gourdcarwgoB0533
Carg12311Wax gourdcarwgoB0536
Carg12311Silver-seed gourdcarcarB332
Carg12311Silver-seed gourdcarcarB353
Carg12311Silver-seed gourdcarcarB355
Carg12311Silver-seed gourdcarcarB447
Carg12311Silver-seed gourdcarcarB448
Carg12311Cucumber (Gy14) v2carcgybB0449
Carg12311Cucumber (Gy14) v2carcgybB0451
Carg12311Cucumber (Gy14) v1carcgyB0511
Carg12311Cucurbita maxima (Rimu)carcmaB0610
Carg12311Cucurbita maxima (Rimu)carcmaB0615
Carg12311Cucurbita maxima (Rimu)carcmaB0617
Carg12311Cucurbita moschata (Rifu)carcmoB0594
Carg12311Cucurbita moschata (Rifu)carcmoB0598
Carg12311Cucurbita moschata (Rifu)carcmoB0600
Carg12311Cucurbita pepo (Zucchini)carcpeB0617
Carg12311Cucurbita pepo (Zucchini)carcpeB0620
Carg12311Cucurbita pepo (Zucchini)carcpeB0624
Carg12311Wild cucumber (PI 183967)carcpiB0477
Carg12311Wild cucumber (PI 183967)carcpiB0479
Carg12311Wild cucumber (PI 183967)carcpiB0480