CmaCh00G005610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G005610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NC domain-containing protein-related
Location	Cma_Chr00 : 40042516 .. 40044003 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATCAGTAATCGAGTGGAGAGAAGCCAAATCAAACCAGGCGATCATATTTACACTTATAGAGCTGTTTTCGCCTATTCCCATCATGGTATTTCTCTATATACCAGGCGATCATATTTACACTTATAGAGCTGTTTTCGCCTATTCCCATCATGGTATTTCTCTATATTTCTTCCCCCCATTTTGAATTTTGAGATTCTATGCGATGAACACGATCTGAAATTTCACTTATCCCCTTATTTCTGTTTCTGGGTTTCTCTTTTTTCTGGCTGATTCTTCTATTTCTGGGAGTAAATCGCATGAACTGCTGTTCATTGTTCAGCATTATTGTTCTTGCTACTATATTGCTAATGTATATTGTCTGAGCTTCGTTTCACTTCAAGTGCATTTCTCTATAAATTGTGTGTTTCATCCTAATGCTGATAGAAATCATATTCTAAGTCCGATCCAAGCATAGCTAAACTCGTTAAAGCATACACTACTACATATTTTCCTGGTTGGACTTTTCCCTCAACATTTTTAAAATGGTCGGCGAGGGAGAAGTTTCTACACCCTTATAAACAATGCTTCATTTTCCTCTCCAACTAACGTGACGTGTCGGTGGTTCGAATTCCTACACTCCGCAGGTTTTTGTTTGATTTTGCTTTCTTTTGGCTGGATATCGATTGCCTTAGCAGGTCCTTGCAATTTTCAGCTCGTTAAGACCTGTATGCATAGGATTTTTCATTTGAAACTTTATCTATAAGATTGACAGTTTAGAACAAAACTTTATGTATAAAATTTTACATTCTAAACTAAGCACGACCATGAATCCACTGGTTTCTCCATGTAGGCATTTTTGTCGGGGGAAGCAAGGTTGTGCATTTTAGACCACAAAGAACCTTACATTCAAACACTGACACACCTCCTGATTTCTATGGTTCAAGTTCAAGCAATCCATCATCCTGTCCGGTTTTCCCTGACTGTGGATTCAAACAGCTGAACAGCGGGGTAGTCCTTTCATGTCTGGACTGCTTCCTAAGAAATGGATCCCTTTACTGCTTTGATTATGGGGTCACCCCATCAGTTTTCCTTTCCAGGGTTAGGGGTGGCACTTGCACCACTGCTACATCCGACTCGTTCGATGTCGTTATTCACCGAGCAATGTATCTTCTTCAAAACGGATTCGGAAACTACAATGTTTTCCAAAACAACTGTGAGGATTTTGCTTTATATTGCAAAACAGGCCTTCTGATTGTAGACAGGCTTGGAGTTGGAAGAAGTGGTCAAGCTACTTCTGTTATTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATTTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATGGCTGTGATGACTGCTGGAATGTACACCATGAGTCGATATGCCACCGACATTGGCGTTCGAACTGA

mRNA sequence

ATGGGTTTGATCAGTAATCGAGTGGAGAGAAGCCAAATCAAACCAGGCGATCATATTTACACTTATAGAGCTGTTTTCGCCTATTCCCATCATGGCATTTTTGTCGGGGGAAGCAAGGTTGTGCATTTTAGACCACAAAGAACCTTACATTCAAACACTGACACACCTCCTGATTTCTATGGTTCAAGTTCAAGCAATCCATCATCCTGTCCGGTTTTCCCTGACTGTGGATTCAAACAGCTGAACAGCGGGGTAGTCCTTTCATGTCTGGACTGCTTCCTAAGAAATGGATCCCTTTACTGCTTTGATTATGGGGTCACCCCATCAGTTTTCCTTTCCAGGGTTAGGGGTGGCACTTGCACCACTGCTACATCCGACTCGTTCGATGTCGTTATTCACCGAGCAATGTATCTTCTTCAAAACGGATTCGGAAACTACAATGTTTTCCAAAACAACTGTGAGGATTTTGCTTTATATTGCAAAACAGGCCTTCTGATTGTAGACAGGCTTGGAGTTGGAAGAAGTGGTCAAGCTACTTCTGTTATTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATTTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATGGCTGTGATGACTGCTGGAATGTACACCATGAGTCGATATGCCACCGACATTGGCGTTCGAACTGA

Coding sequence (CDS)

ATGGGTTTGATCAGTAATCGAGTGGAGAGAAGCCAAATCAAACCAGGCGATCATATTTACACTTATAGAGCTGTTTTCGCCTATTCCCATCATGGCATTTTTGTCGGGGGAAGCAAGGTTGTGCATTTTAGACCACAAAGAACCTTACATTCAAACACTGACACACCTCCTGATTTCTATGGTTCAAGTTCAAGCAATCCATCATCCTGTCCGGTTTTCCCTGACTGTGGATTCAAACAGCTGAACAGCGGGGTAGTCCTTTCATGTCTGGACTGCTTCCTAAGAAATGGATCCCTTTACTGCTTTGATTATGGGGTCACCCCATCAGTTTTCCTTTCCAGGGTTAGGGGTGGCACTTGCACCACTGCTACATCCGACTCGTTCGATGTCGTTATTCACCGAGCAATGTATCTTCTTCAAAACGGATTCGGAAACTACAATGTTTTCCAAAACAACTGTGAGGATTTTGCTTTATATTGCAAAACAGGCCTTCTGATTGTAGACAGGCTTGGAGTTGGAAGAAGTGGTCAAGCTACTTCTGTTATTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATTTGGTGCTCCCTTGGCTGCCATTCTTTCCTCTCCTTTGAAGCTGCTTATGCCAAGTCCTGTTGGCATGGCTGTGATGACTGCTGGAATGTACACCATGAGTCGATATGCCACCGACATTGGCGTTCGAACTGA

Protein sequence

MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFYGSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTCTTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATSVIGAPLAAILSSPLKLLMPSPVGIWCSLGCHSFLSFEAAYAKSCWHGCDDCWNVHHESICHRHWRSN

Homology

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BLAST of CmaCh00G005610 vs. TrEMBL
Match: A0A0A0L737_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119400 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 6.5e-106
Identity = 189/204 (92.65%), Postives = 198/204 (97.06%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGLISNRVERS+IKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQR L+S+TDTP DFY
Sbjct: 1   MGLISNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRNLNSSTDTP-DFY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            SSSSNPSSCP+FPDCGF+Q NSGVVLSCLDCFLRNGSLYCFDYGV PSVFLSRVRGGTC
Sbjct: 61  DSSSSNPSSCPIFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFDYGVPPSVFLSRVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTATSDSFD+VIHRAMYLLQNGFGNYNVF+NNCEDFALYCKTGLLIVDRLGVG SGQA+S
Sbjct: 121 TTATSDSFDMVIHRAMYLLQNGFGNYNVFENNCEDFALYCKTGLLIVDRLGVGGSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGM 203

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BLAST of CmaCh00G005610 vs. TrEMBL
Match: A0A061DSI8_THECC (NC domain-containing protein-related OS=Theobroma cacao GN=TCM_005106 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.8e-93
Identity = 163/204 (79.90%), Postives = 183/204 (89.71%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVER++IKPGDH+YTYRAVF YSHHGIFVGGSKVVHFRP+R L S  +T  D Y
Sbjct: 1   MGLLTNRVERNEIKPGDHVYTYRAVFTYSHHGIFVGGSKVVHFRPERNLDSRVETSSDLY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
              S+    CP FPDCGF+Q NSGVVLSCLDCFLRNGSLYCF+YGVTPSVFL++VRGGTC
Sbjct: 61  DPGST----CPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD  + VIHRAMYLLQNGFGNY++FQNNCEDFALYCKTGLLI+D+LGVGRSGQA+S
Sbjct: 121 TTAVSDPPETVIHRAMYLLQNGFGNYDIFQNNCEDFALYCKTGLLIMDKLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAA+LSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAALLSSPLKLLMPSPVGV 200

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BLAST of CmaCh00G005610 vs. TrEMBL
Match: W9RLI4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023474 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 167/204 (81.86%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVERS+IKPGDHIYTYRA+FAYSHHGIFVGGSKVVHFRP+R L+S  +   D Y
Sbjct: 1   MGLLTNRVERSEIKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPERNLNSG-EASTDSY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            S S     CP FPDCGF+Q NSGVVLSCLDCFLRNGS+YCF+YGVTPSVFL++VRGGTC
Sbjct: 61  DSMS-----CPTFPDCGFRQPNSGVVLSCLDCFLRNGSVYCFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD  + VIHRAMYLLQNGFGNY+VFQNNCEDFALYCKTGLLI+DRLGVGRSGQA+S
Sbjct: 121 TTAASDPSETVIHRAMYLLQNGFGNYDVFQNNCEDFALYCKTGLLILDRLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGV 198

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BLAST of CmaCh00G005610 vs. TrEMBL
Match: A5AP48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00120 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 166/204 (81.37%), Postives = 181/204 (88.73%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVERS+I+PGDHIYT+RAVF YSHHGIFVGGSKVVHF P+R   SN  TP D Y
Sbjct: 1   MGLLTNRVERSEIRPGDHIYTWRAVFTYSHHGIFVGGSKVVHFTPERNRDSNNGTPSDSY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
              SS PS+C  FPDCGF+Q NSGVVLSCLDCFL  GSLY F+YGVTPSVFL++VRGGTC
Sbjct: 61  DLVSSIPSTCSTFPDCGFRQPNSGVVLSCLDCFLGKGSLYSFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTATSD  D VIHRAMYLLQNGFGNY+VFQNNCEDFALYCKTGLLIVD+ GVGRSGQA+S
Sbjct: 121 TTATSDPPDAVIHRAMYLLQNGFGNYDVFQNNCEDFALYCKTGLLIVDKSGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGV 204

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BLAST of CmaCh00G005610 vs. TrEMBL
Match: A0A0B0NBC7_GOSAR (Lecithin retinol acyltransferase OS=Gossypium arboreum GN=F383_36518 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92
Identity = 161/204 (78.92%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVER++IKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRP+R L S+ DT  +  
Sbjct: 1   MGLLTNRVERNEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPERNLDSSIDTSSNLL 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
             +    S+CP FPDCGF+Q NSGVVLSCLDCFLRNGSLYCF+YGVTPSVFL++VRGGTC
Sbjct: 61  DPTFPQ-STCPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD  + VIHRAMYLLQNGFGNY++F+NNCEDFALYCKTGLLI+D LG+GRSGQA+S
Sbjct: 121 TTAASDPLETVIHRAMYLLQNGFGNYDIFENNCEDFALYCKTGLLILDNLGIGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAA+LSSPLKLLMPSP+G+
Sbjct: 181 VIGAPLAALLSSPLKLLMPSPIGV 203

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BLAST of CmaCh00G005610 vs. TAIR10
Match: AT1G01225.1 (AT1G01225.1 NC domain-containing protein-related)

HSP 1 Score: 327.8 bits (839), Expect = 5.8e-90
Identity = 151/204 (74.02%), Postives = 182/204 (89.22%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++N++ER ++KPGDHIYTYRA+FAYSHHGIFVGGSKVVHFRP+   H+  D+     
Sbjct: 1   MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPE---HNPMDSSTSSI 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            SSSS    C +FPDCGF+Q +SGVVLSCLDCFL+NGSLYCF+YGV+PSVFL++VRGGTC
Sbjct: 61  SSSSSE-DICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD+ D VIHRAMYLLQNGFGNY++F+NNCEDFALYCKTGLLI+D+LGVGRSGQA+S
Sbjct: 121 TTAQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           ++GAPLAA+LSSP KLL+PSP+G+
Sbjct: 181 IVGAPLAALLSSPFKLLIPSPIGV 200

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BLAST of CmaCh00G005610 vs. TAIR10
Match: AT4G00905.1 (AT4G00905.1 NC domain-containing protein-related)

HSP 1 Score: 310.8 bits (795), Expect = 7.3e-85
Identity = 147/210 (70.00%), Postives = 175/210 (83.33%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MG+++N+VER ++KPGDHIYTYRAVFAYSHHG+FVGG KVVHF+P+ +L S T       
Sbjct: 1   MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60

Query: 61  GSSS------SNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSR 120
            SSS      S+ + CP +PDCG+K+  SGVVLSCLDCFL+ GSLY FDYGV+ S+FL+R
Sbjct: 61  SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120

Query: 121 VRGGTCTTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGR 180
            RGGTCTTA SD    VIHRAM+LLQNGFGNYNVFQNNCEDFALYCKTGLLI+D+ GVGR
Sbjct: 121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGVGR 180

Query: 181 SGQATSVIGAPLAAILSSPLKLLMPSPVGI 205
           SGQA+S+IGAPLAA+LSSPL LL+P+PVG+
Sbjct: 181 SGQASSIIGAPLAALLSSPLTLLIPNPVGV 210

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BLAST of CmaCh00G005610 vs. TAIR10
Match: AT5G06370.1 (AT5G06370.1 NC domain-containing protein-related)

HSP 1 Score: 215.3 bits (547), Expect = 4.2e-56
Identity = 107/229 (46.72%), Postives = 150/229 (65.50%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL+SNR++RS +KPGDHIY++R  + Y+HHGI+VG  +V+HF  +R     T T  D  
Sbjct: 1   MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFT-RRGQEVGTGTVLDLI 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
             SS    +    P C       GVV SCL+CFL  G LY F+Y V  + FL + RGGTC
Sbjct: 61  LVSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           T A +D  ++V+HRA +LLQNGFG Y+VF+NNCEDFA+YCKT LL+++   +G+SGQA S
Sbjct: 121 TLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVS 180

Query: 181 VIGAPLAAILSSPLKLL-------MPSPVGIWCSLGCHSFLSFEAAYAK 223
           +IG P+AA+LS+P++LL         + +G++C+    + +   A  AK
Sbjct: 181 IIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAK 228

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BLAST of CmaCh00G005610 vs. TAIR10
Match: AT3G02700.1 (AT3G02700.1 NC domain-containing protein-related)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MG +SN++ R  +KPGDHIY++R  + Y+HHGI+VG  +V HF       + T T  D  
Sbjct: 1   MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFTRGDGQETGTGTFLDNI 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
             SSS+       PDCG +    GV+ SCL+CFL  G LY F+Y V+P++FL++ RGG C
Sbjct: 61  IVSSSHNHGDNPCPDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLAKPRGGVC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           T A+SD  + VI+RA +LLQNGFG YNVF+NNCEDFA+YCKTGLL+ +   VGRSGQA S
Sbjct: 121 TIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVAN-TDVGRSGQAAS 180

Query: 181 VIGAPLAAILSSPLKLL 198
           ++ A  + +LSSPL+ +
Sbjct: 181 IVAA-ASVLLSSPLRFV 195

[Close]

BLAST of CmaCh00G005610 vs. TAIR10
Match: AT5G16330.1 (AT5G16330.1 NC domain-containing protein-related)

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-45
Identity = 96/199 (48.24%), Postives = 127/199 (63.82%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPD-- 60
           +G ISN++ R ++KPGDHIY++R  + YSHHGI++G  KV+HF     L + T T  D  
Sbjct: 9   IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68

Query: 61  ----FYGSSSSNPSSCPVFPDCGFKQLN-SGVVLSCLDCFLRNGSLYCFDYGVTPSVFLS 120
                      NP S     +C  +QLN  GV+ SCLDCFL  G++Y F+Y V+P+ F++
Sbjct: 69  VVSVIPNHKGDNPCS-----NCE-EQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIA 128

Query: 121 RVRGGTCTTATSDSFDVVIHRAMY-LLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGV 180
           + R GTCT A SD  D VI RA Y LL+NGFG+Y+  +NNCEDFA+YCKT LL+     +
Sbjct: 129 KPRRGTCTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLVGKDYVL 188

Query: 181 GRSGQATSVIGAPLAAILS 192
           GR GQA+SV  A   A LS
Sbjct: 189 GRGGQASSVSAAAWLAQLS 201

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BLAST of CmaCh00G005610 vs. NCBI nr
Match: gi|659074915|ref|XP_008437864.1| (PREDICTED: uncharacterized protein LOC103483167 [Cucumis melo])

HSP 1 Score: 393.3 bits (1009), Expect = 3.2e-106
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGLISNRVERS+IKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQR L S+TDTP DFY
Sbjct: 1   MGLISNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRNLDSSTDTP-DFY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            SSSSNPSSCP+FPDCGF+Q NSGVVLSCLDCFLRNGSLYCFDYGV PSVFLSRVRGG+C
Sbjct: 61  DSSSSNPSSCPIFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFDYGVPPSVFLSRVRGGSC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTATSDSFD+VIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQA+S
Sbjct: 121 TTATSDSFDMVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGM 203

[Close]

BLAST of CmaCh00G005610 vs. NCBI nr
Match: gi|778676825|ref|XP_004133802.2| (PREDICTED: FACT complex subunit POB3-like [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 9.3e-106
Identity = 189/204 (92.65%), Postives = 198/204 (97.06%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGLISNRVERS+IKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQR L+S+TDTP DFY
Sbjct: 1   MGLISNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRNLNSSTDTP-DFY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            SSSSNPSSCP+FPDCGF+Q NSGVVLSCLDCFLRNGSLYCFDYGV PSVFLSRVRGGTC
Sbjct: 61  DSSSSNPSSCPIFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFDYGVPPSVFLSRVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTATSDSFD+VIHRAMYLLQNGFGNYNVF+NNCEDFALYCKTGLLIVDRLGVG SGQA+S
Sbjct: 121 TTATSDSFDMVIHRAMYLLQNGFGNYNVFENNCEDFALYCKTGLLIVDRLGVGGSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGM 203

[Close]

BLAST of CmaCh00G005610 vs. NCBI nr
Match: gi|1009142390|ref|XP_015888698.1| (PREDICTED: uncharacterized protein LOC107423628 [Ziziphus jujuba])

HSP 1 Score: 365.9 bits (938), Expect = 5.4e-98
Identity = 172/204 (84.31%), Postives = 191/204 (93.63%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL +NRVERS+IKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRP+R L+S+T+T  D+Y
Sbjct: 1   MGLFTNRVERSEIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPERILNSSTETSSDYY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
             S SNP  CP FPDCGF+Q NSGVVLSCLDCFLRNGSLYCF+YGVTPSVF+++VRGGTC
Sbjct: 61  EESMSNP--CPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYGVTPSVFIAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTATSDS + V+HRAMYLLQNGFGNY+VFQNNCEDFALYCKTGLLIVD+LGVGRSGQA+S
Sbjct: 121 TTATSDSPETVVHRAMYLLQNGFGNYDVFQNNCEDFALYCKTGLLIVDKLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           V+GAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VVGAPLAAILSSPLKLLMPSPVGV 202

[Close]

BLAST of CmaCh00G005610 vs. NCBI nr
Match: gi|590721029|ref|XP_007051493.1| (NC domain-containing protein-related [Theobroma cacao])

HSP 1 Score: 349.0 bits (894), Expect = 6.9e-93
Identity = 163/204 (79.90%), Postives = 183/204 (89.71%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVER++IKPGDH+YTYRAVF YSHHGIFVGGSKVVHFRP+R L S  +T  D Y
Sbjct: 1   MGLLTNRVERNEIKPGDHVYTYRAVFTYSHHGIFVGGSKVVHFRPERNLDSRVETSSDLY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
              S+    CP FPDCGF+Q NSGVVLSCLDCFLRNGSLYCF+YGVTPSVFL++VRGGTC
Sbjct: 61  DPGST----CPTFPDCGFRQPNSGVVLSCLDCFLRNGSLYCFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD  + VIHRAMYLLQNGFGNY++FQNNCEDFALYCKTGLLI+D+LGVGRSGQA+S
Sbjct: 121 TTAVSDPPETVIHRAMYLLQNGFGNYDIFQNNCEDFALYCKTGLLIMDKLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAA+LSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAALLSSPLKLLMPSPVGV 200

[Close]

BLAST of CmaCh00G005610 vs. NCBI nr
Match: gi|703114621|ref|XP_010100705.1| (hypothetical protein L484_023474 [Morus notabilis])

HSP 1 Score: 347.8 bits (891), Expect = 1.5e-92
Identity = 167/204 (81.86%), Postives = 184/204 (90.20%), Query Frame = 1


Query: 1   MGLISNRVERSQIKPGDHIYTYRAVFAYSHHGIFVGGSKVVHFRPQRTLHSNTDTPPDFY 60
           MGL++NRVERS+IKPGDHIYTYRA+FAYSHHGIFVGGSKVVHFRP+R L+S  +   D Y
Sbjct: 1   MGLLTNRVERSEIKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPERNLNSG-EASTDSY 60

Query: 61  GSSSSNPSSCPVFPDCGFKQLNSGVVLSCLDCFLRNGSLYCFDYGVTPSVFLSRVRGGTC 120
            S S     CP FPDCGF+Q NSGVVLSCLDCFLRNGS+YCF+YGVTPSVFL++VRGGTC
Sbjct: 61  DSMS-----CPTFPDCGFRQPNSGVVLSCLDCFLRNGSVYCFEYGVTPSVFLAKVRGGTC 120

Query: 121 TTATSDSFDVVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIVDRLGVGRSGQATS 180
           TTA SD  + VIHRAMYLLQNGFGNY+VFQNNCEDFALYCKTGLLI+DRLGVGRSGQA+S
Sbjct: 121 TTAASDPSETVIHRAMYLLQNGFGNYDVFQNNCEDFALYCKTGLLILDRLGVGRSGQASS 180

Query: 181 VIGAPLAAILSSPLKLLMPSPVGI 205
           VIGAPLAAILSSPLKLLMPSPVG+
Sbjct: 181 VIGAPLAAILSSPLKLLMPSPVGV 198

The following BLAST results are available for this feature:

BLAST of CmaCh00G005610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G005610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L737_CUCSA	6.5e-106	92.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119400 PE=4 SV=1	[more]
A0A061DSI8_THECC	4.8e-93	79.90	NC domain-containing protein-related OS=Theobroma cacao GN=TCM_005106 PE=4 SV=1	[more]
W9RLI4_9ROSA	1.1e-92	81.86	Uncharacterized protein OS=Morus notabilis GN=L484_023474 PE=4 SV=1	[more]
A5AP48_VITVI	3.1e-92	81.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00120 PE=4 SV=...	[more]
A0A0B0NBC7_GOSAR	4.1e-92	78.92	Lecithin retinol acyltransferase OS=Gossypium arboreum GN=F383_36518 PE=4 SV=1	[more]

BLAST of CmaCh00G005610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01225.1	5.8e-90	74.02	NC domain-containing protein-related	[more]
AT4G00905.1	7.3e-85	70.00	NC domain-containing protein-related	[more]
AT5G06370.1	4.2e-56	46.72	NC domain-containing protein-related	[more]
AT3G02700.1	1.9e-53	51.27	NC domain-containing protein-related	[more]
AT5G16330.1	1.5e-45	48.24	NC domain-containing protein-related	[more]

BLAST of CmaCh00G005610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074915\|ref\|XP_008437864.1\|	3.2e-106	93.14	PREDICTED: uncharacterized protein LOC103483167 [Cucumis melo]	[more]
gi\|778676825\|ref\|XP_004133802.2\|	9.3e-106	92.65	PREDICTED: FACT complex subunit POB3-like [Cucumis sativus]	[more]
gi\|1009142390\|ref\|XP_015888698.1\|	5.4e-98	84.31	PREDICTED: uncharacterized protein LOC107423628 [Ziziphus jujuba]	[more]
gi\|590721029\|ref\|XP_007051493.1\|	6.9e-93	79.90	NC domain-containing protein-related [Theobroma cacao]	[more]
gi\|703114621\|ref\|XP_010100705.1\|	1.5e-92	81.86	hypothetical protein L484_023474 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007053	LRAT-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016746	transferase activity, transferring acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G005610.1	CmaCh00G005610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007053	LRAT-like domain	PFAM	PF04970	LRAT	coord: 12..165 score: 5.0
None	No IPR available	PANTHER	PTHR13943	HRAS-LIKE SUPPRESSOR - RELATED	coord: 1..204 score: 6.5E
None	No IPR available	PANTHER	PTHR13943:SF32	NC DOMAIN-CONTAINING PROTEIN-LIKE PROTEIN	coord: 1..204 score: 6.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G005610	MELO3C006006	Melon (DHL92) v3.5.1	cmameB009
CmaCh00G005610	ClCG05G000670	Watermelon (Charleston Gray)	cmawcgB006
CmaCh00G005610	CmoCh06G010270	Cucurbita moschata (Rifu)	cmacmoB026
CmaCh00G005610	Cp4.1LG08g00800	Cucurbita pepo (Zucchini)	cmacpeB014
CmaCh00G005610	Cla97C05G080760	Watermelon (97103) v2	cmawmbB012

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G005610	CmaCh06G009770	Cucurbita maxima (Rimu)	cmacmaB023

The following block(s) are covering this gene:

None