CmaCh00G003320 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G003320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ubiquitin conjugating enzyme
Location	Cma_Chr00 : 27471822 .. 27475605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTCCTTTGTTTCCCTGCATACCACATTTCGATTGTTTTCTTCCTCAGTTTTCTCGTCGGAGAGGCCTCTCTCGGCTACCGTCCATGGCGTCGAAACGGATCCTGAAGGAGCTCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGCGGTGGTTTAGTATTCTTTCTACTCTTGTTCCTTTTTACTATCTCTATATTTTTTTTTTAACTTTCTAATATTGGTCTAGTGATTACGTTTTTCATCGGTTATTGGAGACTCCGAGCAACTTCATTGTTGTTATTTTATTTGGAAATTAAGTGGATCGAAATGTTTGTTTGTGGATTGCGTGAAAAAGTAACAACTCTGAAATTCAATTATCATATTTTGTAATTATCTAAGTAGGCGGAGGTCTACGAAAGTCGATTTTGGAGTTCTTAGCACTAACTTGCATTCTCAATTTAGGGAATGATGTTGGAGGAAAGTTTTCCATCCCCTAGGGATGATCATGGATTTTTATTGAGGAATACTATCTTCATTGATATGAAATTTTTTTGGGGAAGCACAAATCAAAGCCATGAGAGCTTATGTTCAAAGTAGAATATCATACCAGGAGAGTCGTGTTCATCTAACATGGTATCAGAGCCATACCCTAAACTTAGCTATGTCAATAGAATCTTCAAATGTCGAACAAAAGTATTGTGAGCCTTGAAGGCATTGTAAAAAATGACTAAGACTCCAAAAGAAAAAGTAGTCGAGCCTCGATTAATGGGAGGCGTACTTTGTTTGAGGGGAGGTGTTGGATGAAAGTCTCCCATATTGGCTAATTTAGGGAATGATCACGGGTTTATAATCAAGGAATACTATCTCTGTTGGTATGAGGTCTTTTGGGAAGTTCAAAGCAAAGCCATGAGAACTTATGCTCAAAGTGGAAAATATCATACCATTATGGAGAGTCGTGTTCATGTTATAATGTTATAATTAGCTGATTATGCGAATGTCTAGAAAATCGGTTTTGGAGTTCTTAGCATTGACTTGCATTCTCAATTTTGTGGTTTACGCGTAGGATATGGTTTAATTTGGCTCTTCTCTAAACAATTCATCGTATTCCGGAATGGAATTCGGTAATATGGAAACTGAATCGTGTATTAGAGTTTGATTTATTTGTATATGTTAAGCTTATTGAAGCAAGGTTCTATTGAGTCGAAAACTATAGATACCGGTGCATTTTGGCTTATGGATCTTTTTGACTTTAGTTCTCTATACTATAAAGAATTGATTCTATGAATTTTCACGTTTTAAATCATAGTTGTTTTTTAATTGAGCTAGACTCAGAACAGTATAACAGCTTAAGATTTGAGTAGTCAACACTTTCAATTCACTTGGACTTCGTAAATTTCTATAGCCCGTTACCATATGTGGTTCTTGTTTTATTAATTATTCTAATGCCTGTAATATATGTGTTTGTCACTGTTTTTATTACTTATTTGATTAATAACTCAGTAAGTCAGTGCTAGAAGTTATTTTCACACTTCCTGAGCTAAACAGTTCAGTTATGACCACCTAAAGGCCATAAAGTGTTTGACTGGGAAAATAGTATAACATTTGGTATCCAAAAATTATATTTTTTGGTAGATGTATTGACCATCTAAAGGCCACATTTTACGCATCCAAAAAAGCTCATATTTTAATACTTAAGGTATAAACCACACATCACATTGGATGTTATTGATAATTTTCTGCACATTTTTCATGTAAATTGTTTTAGATGTTATCGTTGTCAAATAGGCTTACTGCCTATTTTACCATAGTAGCACTATCTTTAACTAAATGTGAAAACTAGATTTGGGGAAAATAAGTGTAGTGACTTGATTAAGGTGAAAATTTAACTTAACCAGAGATATGTCTTCTTAGGTTCTTTGACACCCATTGGTGGATGGAGCTCCCTTGTTCTTGATTTTGGAATGCTATAGTGTAAATCTTGGGAGTTTATCTCTTAATTTCAGGAATTTTATAATATTTCAATTTCCAGGTAGCTTTCGACTGGGCAGCAAATATTTTATTCTCGTGTGGGGAGGTTATCCATTTAAAAGAACGACCGACTATCAAGGTCACTTCAGGGGTAGATGGGGTTTTTAATGCAATGTTGAGATCGTATTTCTTATGTTGTTTCTTCTAGGAATGGTTTTGATTGGGTTGTGTGCTAATTGGAGACTGTTTTTGCATCCGTCATTGGCTATCGTGGGGGATGGAGTCTTTTCTTTCTCTTCTCTTCTGTTTTCCTTCTTCCTTGATAAATTTTTTAGTTTTGTGAGATTGTATGATTATTGCTATGTATCATTTATTATGTCACGGGAGTCCTTACCTACAACTTTTTACGTTGCTTCAGTTTATCATTTGTCTAGGTTGCTTTCAGGACAAAGGTTTTTCACCCAAACATTAACAGTAACGGTAGTATTTGCTTGGACATCTTGAAGGAGCAATGGAGTCCAGCTTTGACTATATCAAGGGTTTTGACTTCTCAATGACAATTTTAACATTCAACTCCTAGATGTTTGAATTTTATATATGTGCCTCTTTTACACGATGGCTTTGGTTCAAATTCTTTGAGTTGCCTGTTGATCAACATTTACAATTTTATTGCTTAACTAGGGAATCAAGGCACTAAGATGATATGCATAAAGAGAAAAAAAAAAAAAACCCATTATGTTGATATAATTTCGTTCATGGTACTCAGTCATACTGATGTAGTAATGTGATGGCAATTATACTTTAGTGTTCAACCCTCTGAACAGTTGTCACATTTCATGTCATCTTTATTTTATGACAATATTTCTCTAATTATAGTAATAGTCATCAATCCAAATTATAGTGAAGCCATCAGGACATAAAAAATTTAAATCCAAGAACGTGTTATGTGAAAACACTGCTAAGCAAACAACTTAGACCAACTGCTGAGAAAGTATTATTGCAACCATATATGGAGCATATAAAATGCACACATGTTGCTCTTGGGTGACAGCATGATATCCTGGTTAGATTTCATTTTTATGAAATTTTTACTGTAAACTTATGAGGGTTACTTATCATTTGAGTAGTGCAATGGGTATCAAGGGGTCACTGGCCAATGTTGACACAGGGACACCATGGTGTGTTTTCTGAGAAAGTCTATTGTCCTCCGCCAAAAATCCAGCCATTTTCTAATGATATATAGTGTAATGCAACTTATTCTAGAATATTGAATCGTTGTCTGCTCTTCAGCATCTTTGGCTAACATTATTGAGAATACATAGTGATTGTCAATCATTTTCTGCATATCCATTTCACTTTTTTCCTAGCTTCGATTAATTATTCAGTTTTTAAATGGTTGGGAAGGGTTTCTGTTTCATATTCAGGTGTTACTTTCTACTTGCTCCCTTTCGACAGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGGTACGAGGGATGTCACTGTTGGTTCTCATGTATAAATGAAAAGTTTCTGTACTATATACTATTATGAGTGATCTAAATAATTCTATGTCGTTCAATTTAAAATCAACATGATGCTTTAAGTTCATATTCGACTAATACATATCAATTATATGGATTTGATTTCGTACAGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

mRNA sequence

GCGTCCTTTGTTTCCCTGCATACCACATTTCGATTGTTTTCTTCCTCAGTTTTCTCGTCGGAGAGGCCTCTCTCGGCTACCGTCCATGGCGTCGAAACGGATCCTGAAGGAGCTCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGCGGTGGTTGCTTTCAGGACAAAGGTTTTTCACCCAAACATTAACAGTAACGGTAGTATTTGCTTGGACATCTTGAAGGAGCAATGGAGTCCAGCTTTGACTATATCAAGGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

Coding sequence (CDS)

ATGGAGTCCAGCTTTGACTATATCAAGGATGCCAACCCAGATGATCTACTAGAGCCAGAAATTTCTCATCTATACAAGACCGATAGGGCCAAGAATGAGACAACTACAAGGAGCTGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGCTCCATGACCTGTGGATCTTAATCCTAGATTTCAAGCCAGTGAAGAAACTATCTCGCATCATGGCTTCTTATGGATGA

Protein sequence

MESSFDYIKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDGLVCIMGRLHDLWILILDFKPVKKLSRIMASYG

Homology

[Close]

BLAST of CmaCh00G003320 vs. Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. Swiss-Prot
Match: UBC5B_ORYSJ (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. Swiss-Prot
Match: UBC28_ARATH (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDR+K E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBC4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKK 43
           + DANPDD L PEI+H+YKTDR K E T R WTKK
Sbjct: 111 LTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145

[Close]

BLAST of CmaCh00G003320 vs. TrEMBL
Match: A0A0A0L608_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120380 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + DANPDD L PEI+HLYKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDANPDDPLVPEIAHLYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. TrEMBL
Match: E5GCG7_CUCME (Ubiquitin conjugating enzyme OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-07
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + DANPDD L PEI+HLYKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDANPDDPLVPEIAHLYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. TrEMBL
Match: A0A0E0JQC2_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-06
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDGLVC 50
           + D NPDD L PEI+H+YKTDR K ETT RSWT+  C+   C
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQNSCEEAAC 151

[Close]

BLAST of CmaCh00G003320 vs. TrEMBL
Match: A5AI12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01190 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. TrEMBL
Match: A0A0D2P0B9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G025200 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 115 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 153

[Close]

BLAST of CmaCh00G003320 vs. TAIR10
Match: AT1G64230.4 (AT1G64230.4 ubiquitin-conjugating enzyme 28)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-09
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E+T RSWT+K   G
Sbjct: 152 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190

[Close]

BLAST of CmaCh00G003320 vs. TAIR10
Match: AT3G08690.1 (AT3G08690.1 ubiquitin-conjugating enzyme 11)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDR+K E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. TAIR10
Match: AT5G41700.4 (AT5G41700.4 ubiquitin conjugating enzyme 8)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK E T R+WT+K   G
Sbjct: 111 LTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 149

[Close]

BLAST of CmaCh00G003320 vs. TAIR10
Match: AT5G56150.1 (AT5G56150.1 ubiquitin-conjugating enzyme 30)

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-08
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDR K E+T +SWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. TAIR10
Match: AT5G53300.1 (AT5G53300.1 ubiquitin-conjugating enzyme 10)

HSP 1 Score: 53.5 bits (127), Expect = 6.7e-08
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTD+ K E+T RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. NCBI nr
Match: gi|449432088|ref|XP_004133832.1| (PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-07
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + DANPDD L PEI+HLYKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDANPDDPLVPEIAHLYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. NCBI nr
Match: gi|763772009|gb|KJB39132.1| (hypothetical protein B456_007G025200 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 115 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 153

[Close]

BLAST of CmaCh00G003320 vs. NCBI nr
Match: gi|567921504|ref|XP_006452758.1| (hypothetical protein CICLE_v10009806mg [Citrus clementina])

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 99  LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 137

[Close]

BLAST of CmaCh00G003320 vs. NCBI nr
Match: gi|363497940|gb|AEW24433.1| (ubiquitin-conjugating enzyme E2 [Camellia sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of CmaCh00G003320 vs. NCBI nr
Match: gi|40287568|gb|AAR83898.1| (ubiquitin-conjugating protein [Capsicum annuum])

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-06
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 8   IKDANPDDLLEPEISHLYKTDRAKNETTTRSWTKKICDG 47
           + D NPDD L PEI+H+YKTDRAK ETT RSWT+K   G
Sbjct: 81  LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 119

The following BLAST results are available for this feature:

BLAST of CmaCh00G003320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBC4_SOLLC	3.7e-08	66.67	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1	[more]
UBC5B_ORYSJ	1.1e-07	64.10	Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2...	[more]
UBC28_ARATH	1.1e-07	64.10	Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1	[more]
UBC11_ARATH	2.4e-07	61.54	Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=1 SV=2	[more]
UBC4_YEAST	3.1e-07	68.57	Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]

BLAST of CmaCh00G003320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L608_CUCSA	6.3e-07	71.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120380 PE=3 SV=1	[more]
E5GCG7_CUCME	6.3e-07	71.79	Ubiquitin conjugating enzyme OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0E0JQC2_ORYPU	1.8e-06	59.52	Uncharacterized protein OS=Oryza punctata PE=3 SV=1	[more]
A5AI12_VITVI	4.1e-06	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01190 PE=3 SV=...	[more]
A0A0D2P0B9_GOSRA	4.1e-06	66.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G025200 PE=3 SV=1	[more]

BLAST of CmaCh00G003320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64230.4	6.0e-09	64.10	ubiquitin-conjugating enzyme 28	[more]
AT3G08690.1	1.3e-08	61.54	ubiquitin-conjugating enzyme 11	[more]
AT5G41700.4	1.8e-08	61.54	ubiquitin conjugating enzyme 8	[more]
AT5G56150.1	5.1e-08	58.97	ubiquitin-conjugating enzyme 30	[more]
AT5G53300.1	6.7e-08	58.97	ubiquitin-conjugating enzyme 10	[more]

BLAST of CmaCh00G003320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432088\|ref\|XP_004133832.1\|	9.1e-07	71.79	PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Cucumis sativus]	[more]
gi\|763772009\|gb\|KJB39132.1\|	5.9e-06	66.67	hypothetical protein B456_007G025200 [Gossypium raimondii]	[more]
gi\|567921504\|ref\|XP_006452758.1\|	5.9e-06	66.67	hypothetical protein CICLE_v10009806mg [Citrus clementina]	[more]
gi\|363497940\|gb\|AEW24433.1\|	5.9e-06	66.67	ubiquitin-conjugating enzyme E2 [Camellia sinensis]	[more]
gi\|40287568\|gb\|AAR83898.1\|	5.9e-06	66.67	ubiquitin-conjugating protein [Capsicum annuum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G003320.1	CmaCh00G003320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	G3DSA:3.10.110.10		coord: 8..44 score: 2.
None	No IPR available	PANTHER	PTHR24068	FAMILY NOT NAMED	coord: 10..45 score: 8.9
None	No IPR available	PANTHER	PTHR24068:SF49	SUBFAMILY NOT NAMED	coord: 10..45 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G003320	CmoCh06G010690	Cucurbita moschata (Rifu)	cmacmoB015
CmaCh00G003320	Cp4.1LG08g01090	Cucurbita pepo (Zucchini)	cmacpeB016
CmaCh00G003320	MELO3C006058.2	Melon (DHL92) v3.6.1	cmamedB000
CmaCh00G003320	CsaV3_3G008390	Cucumber (Chinese Long) v3	cmacucB0000
CmaCh00G003320	Cla97C05G081360	Watermelon (97103) v2	cmawmbB000
CmaCh00G003320	Bhi01G000311	Wax gourd	cmawgoB0007
CmaCh00G003320	CsGy3G008390	Cucumber (Gy14) v2	cgybcmaB273
CmaCh00G003320	Carg20871	Silver-seed gourd	carcmaB1372
CmaCh00G003320	Carg20961	Silver-seed gourd	carcmaB0682

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G003320	Cucurbita maxima (Rimu)	cmacmaB011
CmaCh00G003320	Cucurbita maxima (Rimu)	cmacmaB026
CmaCh00G003320	Cucumber (Gy14) v1	cgycmaB0705
CmaCh00G003320	Cucurbita moschata (Rifu)	cmacmoB008
CmaCh00G003320	Wild cucumber (PI 183967)	cmacpiB000
CmaCh00G003320	Cucumber (Chinese Long) v2	cmacuB001
CmaCh00G003320	Melon (DHL92) v3.5.1	cmameB000
CmaCh00G003320	Watermelon (Charleston Gray)	cmawcgB000
CmaCh00G003320	Watermelon (97103) v1	cmawmB000
CmaCh00G003320	Cucurbita pepo (Zucchini)	cmacpeB005
CmaCh00G003320	Bottle gourd (USVL1VR-Ls)	cmalsiB004