Cla97C09G172940 (gene) Watermelon (97103) v2

Overview
NameCla97C09G172940
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description40S ribosomal protein S18
LocationCla97Chr09 : 9522242 .. 9524309 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCTCTCACTTCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGTATTCATTGCTTTACCTTTCCATTTTTTAATCTCCCCTCTTTGCCGCTTGTCGAAAAATTTGACCATTAGGAGTATTAAAAGGGTTTCGTCCGTTGTTTTCAATTCCGCCTGCTAGGGATTCAAGGTACCCGTTACTAATTATTTGTTAAGAAAGTTAAGATTTAAGTTTTACATAAAAAAACTCAAGATGTGAAATATTCGGGAAAAATGAGTTTAACTTGGGTATTACTTATGGTTGAATCGTTGAAAGTTTTGCAACTTTGAAGGGGCTTATCTGTGTTGCAATAATAACACTGTAGTAAACTGTTATGGTATTTTTCTGATGATCAGGTCAACCACTATAGAACATGTTTTCAGCAGTATTCTGTAACATCCTCTTTGGATGAATATTATTGTAAGAATTTGGATTTTTCTAGAGGTTGGTTTGTGTCTGCAGCTGGAATATGAAAGTAGGATGTAGGTTATTTTTGGGAAGAGGGCCTTCAATCATGAATCATGAGTCTTCACTTAGGAAAAACCTTTGCCAGGACTAGTATGTCAAAATATTAACGTTTTTGACGACTGAGTCTAGTTGATGAAAAAAAGACTGATATTCTGATTTGAGTTATAAGTGGAAGAAAAAGGAACAGAAATATGAAATGCACCTAGATTTTTGGTTGCTGGAATTATCTGCTGCAGCTTCTTTCTTCCTCTTTGATATAATTTATCAACATATATTCCTGATGCGTACATGGGTCTGATAAGAGAGCAATGTATGCACATATCTCTGCTCTTCTCTCTTGTGTAGCTTTCATGAGAGTACATATGTTTCTTCTAATAACAAAATTGACACCAACCCAAATACAAACTCACTAACCCCACACTGAATGATCATAGGGACTAAGCACCTAAATACAGCATAACCTTTCAGCTTAATCTAAATATAGTCCTAAAGACTACTGCCAACTGAGAGACTAAACCAAGTGCCTCTAATTCACTGATGAAATGAGGCCAAAATCTAAGTGAAGGCTTGATGGGAATTGCCAATAAACAGGAATTCATGAGTCCCCGATTGAAGCCAAACACAATTCTTCCCCTTCGATGGACTTTTGCAGGCATCTGAAACACCTATTTGTTAAGAACCTGTTTTTATGATGACCTCTATCAACTCCTCTAGAAATTTGTCAAAAACTGATAACTATCAGACAATTTGAATTCAAACCATTTGTTTGTGGAGATTTCTTCAAAAATACTTTGAAGAAATTAGATTTGTAGCTTAGCTTTAGGGTTTTCTTTAGTATAAGAGATGCTAGTGCAACTGTATTGTTGGTATTTGTAATATCTCTTGAGAGACTGGTAGGAGCAATTAACTCACATTTGTTGGTTGCTGATGTAGTTTATTTAGAAAGTTCATGGTTTTGGAGTATGTTTTTTAGCACATCTAGCCTAGTAGTTTTCTTTTACATTTTCTTTTGTTATATGTTTAACAACCTTGAATGAAATTGGTTTTGAATAATTGTTCCTTTTATTATCAGCTTAGAGGATGTTACAATCCAGTGTTTGGGAAAAACTCAAGTGGCTTATCTAATTTACATCTTTGTTTTCATTTGTTATTTCTGCAAACAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGGAAATATTCTCAAGTAGTTTCGAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGTAACATCTGTTTACGGTGTCATTCCTTGCATTATGTAAATTTGTAGTTCAACGATTAATCTTCGGCATGTTGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGGAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

mRNA sequence

ATGTTTGCTCTCACTTCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGGAAATATTCTCAAGTAGTTTCGAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGGAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

Coding sequence (CDS)

ATGTTTGCTCTCACTTCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCTGAGTTGGACAATCTCATGGTGGTGGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGGAAATATTCTCAAGTAGTTTCGAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCCGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGCCGAGGGAAAACTGTTGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Homology
[Close]
BLAST of Cla97C09G172940 vs. NCBI nr
Match: XP_004139687.1 (PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_004140957.2 PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >KGN44457.1 hypothetical protein Csa_7G293750 [Cucumis sativus] >KGN46116.1 hypothetical protein Csa_6G055370 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 3.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. NCBI nr
Match: XP_022133825.1 (40S ribosomal protein S18 [Momordica charantia] >XP_022143681.1 40S ribosomal protein S18 [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 3.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. NCBI nr
Match: XP_012073942.1 (40S ribosomal protein S18 [Jatropha curcas] >KDP36554.1 hypothetical protein JCGZ_08321 [Jatropha curcas] >GAV72947.1 Ribosomal_S13 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 253.4 bits (646), Expect = 3.9e-64
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300 [Manihot esculenta])

HSP 1 Score: 253.4 bits (646), Expect = 3.9e-64
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. NCBI nr
Match: XP_021902783.1 (40S ribosomal protein S18 isoform X1 [Carica papaya])

HSP 1 Score: 253.1 bits (645), Expect = 5.1e-64
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKG+GRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGVGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TrEMBL
Match: tr|A0A0A0K7Z7|A0A0A0K7Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TrEMBL
Match: tr|A0A1S3CH47|A0A1S3CH47_CUCME (40S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.0e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TrEMBL
Match: tr|B9SEC1|B9SEC1_RICCO (40S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TrEMBL
Match: tr|A0A067KXH7|A0A067KXH7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08321 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TrEMBL
Match: tr|A0A1Q3BYA9|A0A1Q3BYA9_CEPFO (Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16435 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match: sp|P34788|RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 9.2e-65
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match: sp|Q8ISP0|RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 99/126 (78.57%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+  E++ L+ ++ NPRQ+KIPDWFLNR
Sbjct: 27  MFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TV
Sbjct: 87  QKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTV 146

Query: 121 GVSKKR 127
           GVSKK+
Sbjct: 147 GVSKKK 152

[Close]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match: sp|Q8IT98|RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.6e-53
Identity = 97/126 (76.98%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+  E++ ++ +++NPRQ+KIP+WFLNR
Sbjct: 27  MFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TV
Sbjct: 87  QKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTV 146

Query: 121 GVSKKR 127
           GV+KK+
Sbjct: 147 GVAKKK 152

[Close]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match: sp|Q8JGS9|RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-51
Identity = 93/125 (74.40%), Postives = 115/125 (92.00%), Query Frame = 0 

Query: 2   FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQ 61
           FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQ
Sbjct: 28  FAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQ 87

Query: 62  KDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVG 121
           KD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVG
Sbjct: 88  KDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVG 147

Query: 122 VSKKR 127
           VSKK+
Sbjct: 148 VSKKK 152

[Close]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match: sp|Q90YQ5|RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.8e-51
Identity = 92/125 (73.60%), Postives = 115/125 (92.00%), Query Frame = 0 

Query: 2   FALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQ 61
           FA+T+IKG+GRR+A++V +KAD+D++KRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQ
Sbjct: 28  FAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQ 87

Query: 62  KDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVG 121
           KD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVG
Sbjct: 88  KDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVG 147

Query: 122 VSKKR 127
           VSKK+
Sbjct: 148 VSKKK 152

[Close]
BLAST of Cla97C09G172940 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 247.3 bits (630), Expect = 5.1e-66
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 247.3 bits (630), Expect = 5.1e-66
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

[Close]
BLAST of Cla97C09G172940 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 247.3 bits (630), Expect = 5.1e-66
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0 

Query: 1   MFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNR 60
           MFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNR
Sbjct: 27  MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNR 86

Query: 61  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 120
           QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV
Sbjct: 87  QKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTV 146

Query: 121 GVSKKR 127
           GVSKKR
Sbjct: 147 GVSKKR 152

The following BLAST results are available for this feature:
BLAST of Cla97C09G172940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139687.13.0e-64100.00PREDICTED: 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED... [more]
XP_022133825.13.0e-64100.0040S ribosomal protein S18 [Momordica charantia] >XP_022143681.1 40S ribosomal pr... [more]
XP_012073942.13.9e-6499.2140S ribosomal protein S18 [Jatropha curcas] >KDP36554.1 hypothetical protein JCG... [more]
XP_002524340.13.9e-6499.2140S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote... [more]
XP_021902783.15.1e-6498.4140S ribosomal protein S18 isoform X1 [Carica papaya][more]
BLAST of Cla97C09G172940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7Z7|A0A0A0K7Z7_CUCSA2.0e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1[more]
tr|A0A1S3CH47|A0A1S3CH47_CUCME2.0e-64100.0040S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1[more]
tr|B9SEC1|B9SEC1_RICCO2.6e-6499.2140S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 ... [more]
tr|A0A067KXH7|A0A067KXH7_JATCU2.6e-6499.21Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08321 PE=3 SV=1[more]
tr|A0A1Q3BYA9|A0A1Q3BYA9_CEPFO2.6e-6499.21Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
BLAST of Cla97C09G172940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P34788|RS18_ARATH9.2e-6596.0340S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1[more]
sp|Q8ISP0|RS18_BRABE1.9e-5478.5740S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1[more]
sp|Q8IT98|RS18_ARGIR1.6e-5376.9840S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1[more]
sp|Q8JGS9|RS18_DANRE1.5e-5174.4040S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1[more]
sp|Q90YQ5|RS18_ICTPU5.8e-5173.6040S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1[more]
BLAST of Cla97C09G172940 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22780.15.1e-6696.03Ribosomal protein S13/S18 family[more]
AT1G34030.15.1e-6696.03Ribosomal protein S13/S18 family[more]
AT4G09800.15.1e-6696.03S18 ribosomal protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006413 translational initiation
biological_process GO:0001510 RNA methylation
biological_process GO:2000028 regulation of photoperiodism, flowering
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005618 cell wall
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G172940.1Cla97C09G172940.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02743730s ribosomal protein S13, C-terminalGENE3DG3DSA:4.10.910.10coord: 66..116
e-value: 7.0E-29
score: 101.4
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 1..126
e-value: 3.7E-34
score: 115.4
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 2..116
e-value: 1.3E-51
score: 174.2
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 1..119
score: 31.017
NoneNo IPR availableGENE3DG3DSA:1.10.8.50coord: 1..54
e-value: 9.2E-23
score: 82.1
NoneNo IPR availablePANTHERPTHR10871:SF19SUBFAMILY NOT NAMEDcoord: 1..126
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..126
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 95..108
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILYSSF46946S13-like H2TH domaincoord: 2..126

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G172940Cla016393Watermelon (97103) v1wmwmbB041
Cla97C09G172940Csa7G293750Cucumber (Chinese Long) v2cuwmbB571
Cla97C09G172940MELO3C024071Melon (DHL92) v3.5.1mewmbB230
Cla97C09G172940CSPI07G12500Wild cucumber (PI 183967)cpiwmbB597
Cla97C09G172940Cucsa.079620Cucumber (Gy14) v1cgywmbB078
Cla97C09G172940CmaCh04G024610Cucurbita maxima (Rimu)cmawmbB795
Cla97C09G172940CmaCh09G011220Cucurbita maxima (Rimu)cmawmbB049
Cla97C09G172940CmaCh15G005780Cucurbita maxima (Rimu)cmawmbB323
Cla97C09G172940CmaCh01G009680Cucurbita maxima (Rimu)cmawmbB516
Cla97C09G172940CmoCh09G011320Cucurbita moschata (Rifu)cmowmbB036
Cla97C09G172940CmoCh15G005840Cucurbita moschata (Rifu)cmowmbB306
Cla97C09G172940CmoCh01G010060Cucurbita moschata (Rifu)cmowmbB498
Cla97C09G172940CmoCh04G025750Cucurbita moschata (Rifu)cmowmbB770
Cla97C09G172940Lsi02G019660Bottle gourd (USVL1VR-Ls)lsiwmbB212
Cla97C09G172940CsGy7G011630Cucumber (Gy14) v2cgybwmbB542
Cla97C09G172940MELO3C024071.2Melon (DHL92) v3.6.1medwmbB216
Cla97C09G172940Carg15803Silver-seed gourdcarwmbB0066
Cla97C09G172940Carg23311Silver-seed gourdcarwmbB0284
Cla97C09G172940Carg01619Silver-seed gourdcarwmbB0866
Cla97C09G172940CsaV3_7G024510Cucumber (Chinese Long) v3cucwmbB593
Cla97C09G172940Bhi09G001292Wax gourdwgowmbB608
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G172940Watermelon (Charleston Gray)wcgwmbB035