MELO3C024071 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024071
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S13
Location	chr1 : 8035115 .. 8037660 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATCTGATTGACAATATATAAAATCCTTCTCCACTCACCACTCAAAGATCTCCTCTGGTTCTTTCCTGCAGTTGCGCCGCCGGGAATTCTTCCAACCCCTTGCCTCTATCTTCATTCGCCATGGTAAGTAACTGCACTTTCTTCTTTCTCATTTTCCCTCATTGTTCTTCTACTTTTGTTAGGGTTTTATATTCTTCTTCGAATAATCGTTATTTTTTGTTGATCTGGTCTTTTTATTTTCCATCTAGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTACTTTACGTTTCCTTTTTCTTTATTTCTCCTCTTTTCCGCTTGTCTCATATCTAGTTTGATAGAAAAATTTGACGTTTATGAGTATTAAAAGAGTTTCATCCGTTGTTTTTAATTCTGCCTACTACGGATTTAAGGTATCAGTTCCTAATTATGTGCTAAGAAATTTAGGTTTAAGTCTTACATTAAAAAACTCTAGATGTGAGATATTTGGGAATTGGCATAATGTAGGAGTTTGACTTGGGGGTACTGCTTATGGTTGAATGCTTGAAAGCTTTAGAATATTTGAAGGAGCTCATTGGTGTTACAGTAATAACACTGTAGTAAACTGGTATGGCATTTTTCTGCATGATCAGCTCAATCACTGTAGAACATATTTTATGCAGCATTCTGTAACGTTCTCGTTGGGTTAATATCATTGTGAGATTTAGACTTTTCTACAAGTTGGTTCTTGTCTGCAGCTGGAATATGAAAGTACGTAGGCCATAGTCGGGAAGAACAAGAAAAAAATACTATGAAAGCAGCAGGTGGAGTACAGGACCTTCAATCTTGAGTCTTCACATAGCCAGGACAAGGATGTCAAAATATTTAATGACTTTTTTTTGAAAACTGGGCCTAGTTGATGAAAAAGAGACTACACTCCTGATTTGACTTATAAGAGGAAGAAAACGGAACAGAAATATGAACTGCTCCTAGATTTTCGGCTGCTGGAGTTATCCGCTGCCGATTCTTTCTTTCTTCTTTGATATAATTTCACAACATATATTCCTGGTGCCTACCTGGGTCTGATGAGAGTGATGCATGAGAATAAAGCTAGTTCCTCTAGTTCACTGAAGGAAATGAGGCTAAATCTTAGTTATGACTTGATGGAAATTGCAAATAATCAGGAATTCCTTAGTCCATGACTTAAGCCAAACTCAACTGTTCCCCTTCAACGTCGACTTTTACAGGCATCTGAAACTCCTATTTGTTAAAATCCTGTTTTTATGATGGCCTCTTTCAAATCCTCTAGAAATTTGTTTGAATTTGAACCATGTATTTTTTAAGAATCCTTCACAAAGACTGAAGAAATTAGATTTGTAGCTTACCTTGGGATTTTCTTTAGTACAAGAGACACTGTTGCAATTATATTGTTGGAATTTATAATATACTAATATCTCTAGAGAGACTGGGGTAAGAGCAATTGATTCACATTTGTTGCTTGGTGCTGTAGTTTATTTAGGAAGTTCATGGTTTTGGGGTATGGTTTTTTGCACATCTAGTAGTTTATCTTTCTTTTGTTATATGTTTAATGACCTTGACGAAATTTGGTTTTAATTTATTGACCATTTTATTACCAGCCTAAAGGATGTTACGATTCAGTGTTCAGAGAAAAACTCAACTGGTTTGACTAATATACATCTTTGTTTTCATTTGTTATTTTGCAAACAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGTAATATAATTGAAGTGTTTCTTCCAATGGCTGATATATTTTGTTTCTTGGATATTGAGTCTCACTCCTTGCATTATGTAAATTCATGGTTCACAATGATTAATCTTCGACATGATGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGAGCATTTGCTTGTTTTTATAGTCGAGTATGTGTTTGGGCAAATCAAGTTCTTTGGCCTTTTAGTTGAACATTTGAGCTGTACTTTCTTTTTGGAACTTTTGTTTGGGATGTGGTATTTTTGTTTTAAGTTTAACTCTTTTTTTCTATGTCTTTGATTAGGCTAGAAAAGGAAGTTTGATAGTGGCAAATGGTAAAGATTATGAATCCATATTGATCCTTTTGGTGTGAAAAAGTGTTGAGAGATTTTATTTATAAAGTTGTTATTTGGTGCAATCAGGTTTACTTG

mRNA sequence

AGAATCTGATTGACAATATATAAAATCCTTCTCCACTCACCACTCAAAGATCTCCTCTGGTTCTTTCCTGCAGTTGCGCCGCCGGGAATTCTTCCAACCCCTTGCCTCTATCTTCATTCGCCATGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGAGCATTTGCTTGTTTTTATAGTCGAGTATGTGTTTGGGCAAATCAAGTTCTTTGGCCTTTTAGTTGAACATTTGAGCTGTACTTTCTTTTTGGAACTTTTGTTTGGGATGTGGTATTTTTGTTTTAAGTTTAACTCTTTTTTTCTATGTCTTTGATTAGGCTAGAAAAGGAAGTTTGATAGTGGCAAATGGTAAAGATTATGAATCCATATTGATCCTTTTGGTGTGAAAAAGTGTTGAGAGATTTTATTTATAAAGTTGTTATTTGGTGCAATCAGGTTTACTTG

Coding sequence (CDS)

ATGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*

Homology

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BLAST of MELO3C024071 vs. Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-80
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

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BLAST of MELO3C024071 vs. Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-67
Identity = 118/152 (77.63%), Postives = 139/152 (91.45%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of MELO3C024071 vs. Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.4e-66
Identity = 115/152 (75.66%), Postives = 139/152 (91.45%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

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BLAST of MELO3C024071 vs. Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-64
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of MELO3C024071 vs. Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.3e-64
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of MELO3C024071 vs. TrEMBL
Match: A0A0A0K7Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.6e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TrEMBL
Match: B9SEC1_RICCO (40S ribosomal protein S18, putative OS=Ricinus communis GN=RCOM_0961900 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 9.9e-81
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TrEMBL
Match: A0A067KXH7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08321 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-80
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TrEMBL
Match: A0A059C7Z2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03104 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.4e-80
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNR+KDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TrEMBL
Match: A0A067H7X7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031787mg PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-79
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TAIR10
Match: AT1G22780.1 (AT1G22780.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 299.7 bits (766), Expect = 1.0e-81
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TAIR10
Match: AT1G34030.1 (AT1G34030.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 299.7 bits (766), Expect = 1.0e-81
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. TAIR10
Match: AT4G09800.1 (AT4G09800.1 S18 ribosomal protein)

HSP 1 Score: 299.7 bits (766), Expect = 1.0e-81
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. NCBI nr
Match: gi|449443847|ref|XP_004139687.1| (PREDICTED: 40S ribosomal protein S18 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. NCBI nr
Match: gi|255566712|ref|XP_002524340.1| (PREDICTED: 40S ribosomal protein S18 [Ricinus communis])

HSP 1 Score: 307.4 bits (786), Expect = 1.4e-80
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. NCBI nr
Match: gi|802607700|ref|XP_012073942.1| (PREDICTED: 40S ribosomal protein S18 [Jatropha curcas])

HSP 1 Score: 305.8 bits (782), Expect = 4.1e-80
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. NCBI nr
Match: gi|729294043|ref|XP_010535069.1| (PREDICTED: 40S ribosomal protein S18 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 305.8 bits (782), Expect = 4.1e-80
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of MELO3C024071 vs. NCBI nr
Match: gi|702347555|ref|XP_010057300.1| (PREDICTED: 40S ribosomal protein S18-like [Eucalyptus grandis])

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-79
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNR+KDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:

BLAST of MELO3C024071 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS18_ARATH	1.9e-80	96.05	40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1	[more]
RS18_BRABE	4.0e-67	77.63	40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1	[more]
RS18_ARGIR	4.4e-66	75.66	40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1	[more]
RS18_DANRE	2.4e-64	74.34	40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1	[more]
RS18_ICTPU	9.3e-64	73.68	40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1	[more]

BLAST of MELO3C024071 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Z7_CUCSA	7.6e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055370 PE=3 SV=1	[more]
B9SEC1_RICCO	9.9e-81	99.34	40S ribosomal protein S18, putative OS=Ricinus communis GN=RCOM_0961900 PE=3 SV=...	[more]
A0A067KXH7_JATCU	2.9e-80	98.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08321 PE=3 SV=1	[more]
A0A059C7Z2_EUCGR	8.4e-80	98.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03104 PE=3 SV=1	[more]
A0A067H7X7_CITSI	1.1e-79	98.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031787mg PE=3 SV=1	[more]

BLAST of MELO3C024071 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22780.1	1.0e-81	96.05	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	1.0e-81	96.05	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	1.0e-81	96.05	S18 ribosomal protein	[more]

BLAST of MELO3C024071 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443847\|ref\|XP_004139687.1\|	1.1e-80	100.00	PREDICTED: 40S ribosomal protein S18 [Cucumis sativus]	[more]
gi\|255566712\|ref\|XP_002524340.1\|	1.4e-80	99.34	PREDICTED: 40S ribosomal protein S18 [Ricinus communis]	[more]
gi\|802607700\|ref\|XP_012073942.1\|	4.1e-80	98.68	PREDICTED: 40S ribosomal protein S18 [Jatropha curcas]	[more]
gi\|729294043\|ref\|XP_010535069.1\|	4.1e-80	98.68	PREDICTED: 40S ribosomal protein S18 isoform X1 [Tarenaya hassleriana]	[more]
gi\|702347555\|ref\|XP_010057300.1\|	1.2e-79	98.03	PREDICTED: 40S ribosomal protein S18-like [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44824	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024071T1	MELO3C024071T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44824	MU44824	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024071	Csa7G293750	Cucumber (Chinese Long) v2	cumeB525
MELO3C024071	Cla016393	Watermelon (97103) v1	mewmB204
MELO3C024071	ClCG09G010200	Watermelon (Charleston Gray)	mewcgB181
MELO3C024071	Cla97C09G172940	Watermelon (97103) v2	mewmbB230
MELO3C024071	Bhi09G001292	Wax gourd	mewgoB258
MELO3C024071	CSPI07G12500	Wild cucumber (PI 183967)	cpimeB528
MELO3C024071	Cucsa.079620	Cucumber (Gy14) v1	cgymeB085
MELO3C024071	CmaCh09G011220	Cucurbita maxima (Rimu)	cmameB019
MELO3C024071	CmaCh01G009680	Cucurbita maxima (Rimu)	cmameB396
MELO3C024071	CmoCh09G011320	Cucurbita moschata (Rifu)	cmomeB008
MELO3C024071	CmoCh01G010060	Cucurbita moschata (Rifu)	cmomeB387
MELO3C024071	Lsi02G019660	Bottle gourd (USVL1VR-Ls)	lsimeB189
MELO3C024071	Cp4.1LG06g07440	Cucurbita pepo (Zucchini)	cpemeB714
MELO3C024071	Cp4.1LG02g09160	Cucurbita pepo (Zucchini)	cpemeB505
MELO3C024071	CsGy7G011630	Cucumber (Gy14) v2	cgybmeB460
MELO3C024071	Carg23311	Silver-seed gourd	carmeB0276
MELO3C024071	CsaV3_7G024510	Cucumber (Chinese Long) v3	cucmeB540

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None