CmoCh15G005840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G005840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosomal protein S18 component of cytosolic 80S ribosome and 40S small subunit
Location	Cmo_Chr15 : 2823941 .. 2826498 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGGTGGTCGTCAGCAGTAGGTGGTGACTGGTGGTGGGCAATGCTGGTCGGCGACAACCTCGAATCAACAACTGCCATGGTATGGTGGTCGTCGGCAATAGGTGGTGATTGGTGGCGGGCAATGCTGGTCGACGACAACCTCGAATCAGCAATTGCCATGGTATGGTGGTCGTCGACAGTAGTGGTGAATGGTGGTGGGCAATGTTGGTCGGTAACAACCTCTAATCATTGTTGACAATCTCTAATCATTGTCCAATGTTACAATTAAACGCTTAATAAGTAGTGGTAAACATATAATTGGTGTAAATTAGAATATCCAAAATGTAGAAACTATATTATAACTATGCAAAAGTAAGAAAAATTACCAATAAATTCAATTTTCAATTGAGTTAAAAAAAAAAAAAAAAAATCAATACAATTAGTTATGAAAAATAAAAATTTAAATAGCTAAAAAAAAATATAGTTATATGACAAATTTCAATTAAATTAAAAATAAATGGGCCAGATCTCAAACGAAAACCAGGCCTATAAATGGGCCGAGTTCAAAATGTCCTGAACAGGCATTTATGAAATTCATTTAAAAGGGTAAAGTAGGCTTTTCACAGAAACAATCAACCCTAGAAGAAAAATATGCCTAATATAAAACCCTAATTTTCGGCCTCTTTCACCAGGTAAGTCGTTCGTTTTGTTGCAGCCTCTGGGAGAAGAAGCATCAGGACGAAGCCGCTCGCCGTCTGCCGTCAAAATGGTGAACCTCGATGCCTTATTTTCTTCACCATTGTTGTACTATTTCTTCTCCTTAATCGGATGAACCTCTATCTCTTTACGAACGTCTTAATGTTTTCTTTTTATCGTCGATACAGTCGTTGGTTGCGAACGAAGATTTCCAGCACATTTTGCGTGTGCTCAACACTAATGTCGATGGGAAGCAGAAGATTATGTTCGCTCTTACTTCCATCAAAGGTATTGGAAGGCGTCTCGCCAACATGGTTTGCAAAAAAGCCGATGTTGACATGAACAAAAGGTATTCCTTTTCTCGTTCATGTTAGTGATCCATGAGATCGTAAGGAGATCTCTTTTTTGTAGTCTAAGTTAATCAGATATGTTTTCATTAGGTTTATGTTCGTTAACAGATTGTTTTTAGAACAGTTCCACAAGCTCATACTTGTTTAAAATGCTGTATTTGCTCGATATTCTGTATTTGTGATGTCAAGATCCAAATTAAAGATTAATGTAGTTGGTATTTTGCTAGGATTTAAGGTACCTAATGTAGTTTAGGAGTATCATGAGAGAAAAACTAAACGACTGAATTCATGTTCTTCTGCCTATGCAGATGCAATAATGTTTTTCAATGGATTCGTATTCAATCTAAACGTTGATTGTTTAGGATATAATCTTGGTAGTTTATCGTTGAGGATTTGTTGATTATATTTGTGTAATCGCCCTTAATACATTTTTTTAAAATGTGTTCTTCTGACTTTAGGGCTGGTGAATTAACTGCGGCCGAGCTGGACAATCTCATGGTGGTTGTTGCGAACCCCCGACAGTTCAAAATTCCTGACTGGTTTTTGAATAGACAGAAGGACTACAAGGATGGTAAGTACTCACAGGTGGTATCGAATGCTCTCGACATGAAGCTGAGAGACGACTTGGAGCGATTGAAGAAGATCAGGTGATTCTTATTAGCAACATATATGTTTTTGGTTTCATTGAGCACACAATATTAGATTATAAGGCTCTTGAAACTGTTAACTTTATTGCCATTTGACATTGTTAGTTGTCTATCCGTCCGATCAAGATATAATGTATTAGTAATTTTCTGTTTAGATACCGGAAAGGATAATCTTTGCCGAAATAGAAAGTTTCCTAATGGATCAACCAAGTCTTGAAGTTGTCGATTTTTTACTATGGTGTATCTATGTAATTTCAAAGTATTTATGGTTATTGGAAGAAGACTTAGATAGATTGTCCCTGATATATTCGAGCGAACAATTTGAGTAATACGCGACGCCGGGGCAGAGCTTTGTATCCACTTACCATTTCAAAACCTCTGTGCTTACGACTGTTGATCATCTTCTCTACTTTTGATAAATGTTTGAGTACGATGTCGGGGCAGTGCATTGTTTATCTTTTACTCTCTGGCCTGATTCTGATGATGCAAACTCGACCTAAGCTCTGTATTTTGATGTCTAATGGCCTTAATACTAAGTTCGGTGATAAAATCATGTGCAGGAACCACCGTGGGCTGCGACACTACTGGGGTCTTCGTGTCCGTGGTCAGCACACTAAGACTACTGGACGCCGAGGGAAGACTGTTGGTGTCTCGAAGAAGCGTTAATAATTTCGATCCCTTTCTTATTTTGCAAGCGATTTTTCTTGATTAATATGATTAGTGTTTGAGATTTTTTGGGTTTGGATCTCTTTGGATTTTGGCTGGGGTTTTTGAAACCTTTGGCCATTTATATTTGCATTTCGCTCATTCATTTTTGGTCGTTATAATAGAGATTGAAATCCCAGTCGAATTTATTATTTATCTTCTCCATTATCCATCTG

mRNA sequence

ATGGTATGGTGGTCGTCAGCAGTAGGTGGTGACTGGTGGTGGGCAATGCTGGTCGGCGACAACCTCGAATCAACAACTGCCATGGTATGGTGGTCGTCGGCAATAGGTGGTGATTGGTGGCGGGCAATGCTGGTCGACGACAACCTCGAATCAGCAATTGCCATGGTATGGTGGTCGTCGACAGTAGTGGTGAATGGTGGTGGGCAATGTAAGTCGTTCGTTTTGTTGCAGCCTCTGGGAGAAGAAGCATCAGGACGAAGCCGCTCGCCGTCTGCCGTCAAAATGTCGTTGGTTGCGAACGAAGATTTCCAGCACATTTTGCGTGTGCTCAACACTAATGTCGATGGGAAGCAGAAGATTATGTTCGCTCTTACTTCCATCAAAGGTATTGGAAGGCGTCTCGCCAACATGGTTTGCAAAAAAGCCGATGTTGACATGAACAAAAGGGCTGGTGAATTAACTGCGGCCGAGCTGGACAATCTCATGGTGGTTGTTGCGAACCCCCGACAGTTCAAAATTCCTGACTGGTTTTTGAATAGACAGAAGGACTACAAGGATGGTAAGTACTCACAGGTGGTATCGAATGCTCTCGACATGAAGCTGAGAGACGACTTGGAGCGATTGAAGAAGATCAGGAACCACCGTGGGCTGCGACACTACTGGGGTCTTCGTGTCCGTGGTCAGCACACTAAGACTACTGGACGCCGAGGGAAGACTGTTGGTGTCTCGAAGAAGCGTTAATAATTTCGATCCCTTTCTTATTTTGCAAGCGATTTTTCTTGATTAATATGATTAGTGTTTGAGATTTTTTGGGTTTGGATCTCTTTGGATTTTGGCTGGGGTTTTTGAAACCTTTGGCCATTTATATTTGCATTTCGCTCATTCATTTTTGGTCGTTATAATAGAGATTGAAATCCCAGTCGAATTTATTATTTATCTTCTCCATTATCCATCTG

Coding sequence (CDS)

ATGGTATGGTGGTCGTCAGCAGTAGGTGGTGACTGGTGGTGGGCAATGCTGGTCGGCGACAACCTCGAATCAACAACTGCCATGGTATGGTGGTCGTCGGCAATAGGTGGTGATTGGTGGCGGGCAATGCTGGTCGACGACAACCTCGAATCAGCAATTGCCATGGTATGGTGGTCGTCGACAGTAGTGGTGAATGGTGGTGGGCAATGTAAGTCGTTCGTTTTGTTGCAGCCTCTGGGAGAAGAAGCATCAGGACGAAGCCGCTCGCCGTCTGCCGTCAAAATGTCGTTGGTTGCGAACGAAGATTTCCAGCACATTTTGCGTGTGCTCAACACTAATGTCGATGGGAAGCAGAAGATTATGTTCGCTCTTACTTCCATCAAAGGTATTGGAAGGCGTCTCGCCAACATGGTTTGCAAAAAAGCCGATGTTGACATGAACAAAAGGGCTGGTGAATTAACTGCGGCCGAGCTGGACAATCTCATGGTGGTTGTTGCGAACCCCCGACAGTTCAAAATTCCTGACTGGTTTTTGAATAGACAGAAGGACTACAAGGATGGTAAGTACTCACAGGTGGTATCGAATGCTCTCGACATGAAGCTGAGAGACGACTTGGAGCGATTGAAGAAGATCAGGAACCACCGTGGGCTGCGACACTACTGGGGTCTTCGTGTCCGTGGTCAGCACACTAAGACTACTGGACGCCGAGGGAAGACTGTTGGTGTCTCGAAGAAGCGTTAA

Homology

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BLAST of CmoCh15G005840 vs. Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.3e-79
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.9e-65
Identity = 117/152 (76.97%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +N+VCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of CmoCh15G005840 vs. Swiss-Prot
Match: RS18_ARGIR (40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-64
Identity = 115/152 (75.66%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]

BLAST of CmoCh15G005840 vs. Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-62
Identity = 113/152 (74.34%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

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BLAST of CmoCh15G005840 vs. Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-61
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of CmoCh15G005840 vs. TrEMBL
Match: M0SQU9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 8.8e-79
Identity = 157/191 (82.20%), Postives = 168/191 (87.96%), Query Frame = 1


Query: 61  TVVVNGGGQCKSFVLLQ--PLGEEASGRSRSPS---AVKMSLVANEDFQHILRVLNTNVD 120
           TVV+     C SF LLQ  P  E +  R R+ S   A  MSLVANEDFQHILRVLNTNVD
Sbjct: 11  TVVIYRSPTCGSFFLLQSPPHRERSEIRRRADSETLAAAMSLVANEDFQHILRVLNTNVD 70

Query: 121 GKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPD 180
           GKQKIMFALTSIKGIGRR AN+VCKKADVDMNKRAGE++AAEL+NLM +VANPRQFKIPD
Sbjct: 71  GKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGEISAAELENLMTIVANPRQFKIPD 130

Query: 181 WFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGR 240
           WFLNR+KDYKDG+YSQVVSNALDMKLRDDLERLKKIRNHRGLRH+WGLRVRGQHTKTTGR
Sbjct: 131 WFLNRKKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHFWGLRVRGQHTKTTGR 190

Query: 241 RGKTVGVSKKR 247
           RGKTVGVSKKR
Sbjct: 191 RGKTVGVSKKR 201

[Close]

BLAST of CmoCh15G005840 vs. TrEMBL
Match: A0A0S3TAB7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G142700 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.0e-78
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 1


Query: 88  RSPSAVKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMN 147
           +SPS  KMSLVANEDFQHILRVLNTNVDGKQ IMFALTSIKGIGRR AN+VCKKADVDMN
Sbjct: 17  KSPSPKKMSLVANEDFQHILRVLNTNVDGKQNIMFALTSIKGIGRRFANIVCKKADVDMN 76

Query: 148 KRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLER 207
           KRAGEL+AAELDNLM VVANPRQFK+PDWFLNR+KDYKDGKYSQVVSNALDMKLRDDLER
Sbjct: 77  KRAGELSAAELDNLMTVVANPRQFKVPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLER 136

Query: 208 LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 137 LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 175

[Close]

BLAST of CmoCh15G005840 vs. TrEMBL
Match: A0A0A0K7Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR AN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. TrEMBL
Match: V4T8G2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002764mg PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. TrEMBL
Match: A0A067H7X7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031787mg PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. TAIR10
Match: AT1G22780.1 (AT1G22780.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 295.8 bits (756), Expect = 2.4e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. TAIR10
Match: AT1G34030.1 (AT1G34030.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 295.8 bits (756), Expect = 2.4e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. TAIR10
Match: AT4G09800.1 (AT4G09800.1 S18 ribosomal protein)

HSP 1 Score: 295.8 bits (756), Expect = 2.4e-80
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. NCBI nr
Match: gi|965616873|dbj|BAU02023.1| (hypothetical protein VIGAN_11142700 [Vigna angularis var. angularis])

HSP 1 Score: 300.4 bits (768), Expect = 2.8e-78
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 1


Query: 88  RSPSAVKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMN 147
           +SPS  KMSLVANEDFQHILRVLNTNVDGKQ IMFALTSIKGIGRR AN+VCKKADVDMN
Sbjct: 17  KSPSPKKMSLVANEDFQHILRVLNTNVDGKQNIMFALTSIKGIGRRFANIVCKKADVDMN 76

Query: 148 KRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLER 207
           KRAGEL+AAELDNLM VVANPRQFK+PDWFLNR+KDYKDGKYSQVVSNALDMKLRDDLER
Sbjct: 77  KRAGELSAAELDNLMTVVANPRQFKVPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLER 136

Query: 208 LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 137 LKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 175

[Close]

BLAST of CmoCh15G005840 vs. NCBI nr
Match: gi|449443847|ref|XP_004139687.1| (PREDICTED: 40S ribosomal protein S18 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 3.7e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR AN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. NCBI nr
Match: gi|567883923|ref|XP_006434520.1| (hypothetical protein CICLE_v10002764mg [Citrus clementina])

HSP 1 Score: 300.1 bits (767), Expect = 3.7e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of CmoCh15G005840 vs. NCBI nr
Match: gi|565461496|ref|XP_006288747.1| (hypothetical protein CARUB_v10002063mg, partial [Capsella rubella])

HSP 1 Score: 300.1 bits (767), Expect = 3.7e-78
Identity = 149/172 (86.63%), Postives = 158/172 (91.86%), Query Frame = 1


Query: 75  LLQPLGEEASGRSRSPSAVKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRL 134
           ++  L   +S     P  +KMSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRL
Sbjct: 12  IVYSLNTASSSHLPHPLLIKMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRL 71

Query: 135 ANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 194
           AN+ CKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Sbjct: 72  ANIACKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 131

Query: 195 NALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           NALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 132 NALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 183

[Close]

BLAST of CmoCh15G005840 vs. NCBI nr
Match: gi|255566712|ref|XP_002524340.1| (PREDICTED: 40S ribosomal protein S18 [Ricinus communis])

HSP 1 Score: 299.7 bits (766), Expect = 4.8e-78
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 95  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELT 154
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR AN+VCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 155 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 214
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 215 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 247
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:

BLAST of CmoCh15G005840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS18_ARATH	4.3e-79	96.05	40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1	[more]
RS18_BRABE	7.9e-65	76.97	40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1	[more]
RS18_ARGIR	6.7e-64	75.66	40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1	[more]
RS18_DANRE	3.7e-62	74.34	40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1	[more]
RS18_ICTPU	1.4e-61	73.68	40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1	[more]

BLAST of CmoCh15G005840 vs. TrEMBL


Match Name	E-value	Identity	Description
M0SQU9_MUSAM	8.8e-79	82.20	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
A0A0S3TAB7_PHAAN	2.0e-78	93.71	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G142700 PE=...	[more]
A0A0A0K7Z7_CUCSA	2.5e-78	98.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055370 PE=3 SV=1	[more]
V4T8G2_9ROSI	2.5e-78	98.68	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002764mg PE=3 SV=1	[more]
A0A067H7X7_CITSI	2.5e-78	98.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031787mg PE=3 SV=1	[more]

BLAST of CmoCh15G005840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22780.1	2.4e-80	96.05	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	2.4e-80	96.05	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	2.4e-80	96.05	S18 ribosomal protein	[more]

BLAST of CmoCh15G005840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965616873\|dbj\|BAU02023.1\|	2.8e-78	93.71	hypothetical protein VIGAN_11142700 [Vigna angularis var. angularis]	[more]
gi\|449443847\|ref\|XP_004139687.1\|	3.7e-78	98.68	PREDICTED: 40S ribosomal protein S18 [Cucumis sativus]	[more]
gi\|567883923\|ref\|XP_006434520.1\|	3.7e-78	98.68	hypothetical protein CICLE_v10002764mg [Citrus clementina]	[more]
gi\|565461496\|ref\|XP_006288747.1\|	3.7e-78	86.63	hypothetical protein CARUB_v10002063mg, partial [Capsella rubella]	[more]
gi\|255566712\|ref\|XP_002524340.1\|	4.8e-78	98.03	PREDICTED: 40S ribosomal protein S18 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001892	Ribosomal_S13
IPR010979	Ribosomal_S13-like_H2TH
IPR018269	Ribosomal_S13_CS
IPR027437	30s_Rbsml_prot_S13_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006413	translational initiation
biological_process	GO:0006412	translation
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G005840.1	CmoCh15G005840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 106..245 score: 23
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 108..236 score: 2.5
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 109..239 score: 34
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 107..246 score: 3.3
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 215..228 scor
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	G3DSA:4.10.910.10		coord: 200..243 score: 4.6
None	No IPR available	GENE3D	G3DSA:1.10.8.50		coord: 106..177 score: 6.1
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..246 score: 4.6E
None	No IPR available	PANTHER	PTHR10871:SF6	40S RIBOSOMAL PROTEIN S18	coord: 1..246 score: 4.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G005840	Cucsa.079620	Cucumber (Gy14) v1	cgycmoB0132
CmoCh15G005840	Cucsa.363910	Cucumber (Gy14) v1	cgycmoB0996
CmoCh15G005840	CmaCh15G005780	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G005840	CmaCh04G024610	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G005840	Cla013782	Watermelon (97103) v1	cmowmB249
CmoCh15G005840	Cla016393	Watermelon (97103) v1	cmowmB244
CmoCh15G005840	Csa7G293750	Cucumber (Chinese Long) v2	cmocuB305
CmoCh15G005840	Csa6G055370	Cucumber (Chinese Long) v2	cmocuB297
CmoCh15G005840	MELO3C019979	Melon (DHL92) v3.5.1	cmomeB262
CmoCh15G005840	ClCG09G010200	Watermelon (Charleston Gray)	cmowcgB234
CmoCh15G005840	ClCG08G007380	Watermelon (Charleston Gray)	cmowcgB264
CmoCh15G005840	CSPI06G04700	Wild cucumber (PI 183967)	cmocpiB306
CmoCh15G005840	Lsi02G019660	Bottle gourd (USVL1VR-Ls)	cmolsiB262
CmoCh15G005840	Cp4.1LG13g03830	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G005840	Cp4.1LG01g21270	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G005840	Cp4.1LG06g07440	Cucurbita pepo (Zucchini)	cmocpeB299
CmoCh15G005840	MELO3C019979.2	Melon (DHL92) v3.6.1	cmomedB297
CmoCh15G005840	CsaV3_7G024510	Cucumber (Chinese Long) v3	cmocucB0367
CmoCh15G005840	Cla97C09G172940	Watermelon (97103) v2	cmowmbB306
CmoCh15G005840	Cla97C08G150070	Watermelon (97103) v2	cmowmbB301
CmoCh15G005840	Bhi04G001345	Wax gourd	cmowgoB0386
CmoCh15G005840	CsGy7G011630	Cucumber (Gy14) v2	cgybcmoB900
CmoCh15G005840	CsGy6G004640	Cucumber (Gy14) v2	cgybcmoB721
CmoCh15G005840	Carg01619	Silver-seed gourd	carcmoB1118
CmoCh15G005840	Carg15803	Silver-seed gourd	carcmoB0092

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G005840	CmoCh09G011320	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh15G005840	CmoCh04G025750	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G005840	Watermelon (Charleston Gray)	cmowcgB263
CmoCh15G005840	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G005840	Watermelon (97103) v1	cmowmB248
CmoCh15G005840	Watermelon (97103) v1	cmowmB250
CmoCh15G005840	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G005840	Cucumber (Chinese Long) v3	cmocucB0359
CmoCh15G005840	Watermelon (97103) v2	cmowmbB300
CmoCh15G005840	Watermelon (97103) v2	cmowmbB302