Cla97C09G172780 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G172780
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	SLL1 protein
Location	Cla97Chr09 : 9274264 .. 9274449 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGACATGCTCACGGACATGACGAACCGTATTATTTGCATGCAAAGCATATGTACAACTTGGATAGGATGAAACATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTCAGCATTGGCGTGGGTGTTCCAATCTATGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

mRNA sequence

ATGGGAGGACATGCTCACGGACATGACGAACCGTATTATTTGCATGCAAAGCATATGTACAACTTGGATAGGATGAAACATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTCAGCATTGGCGTGGGTGTTCCAATCTATGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Coding sequence (CDS)

ATGGGAGGACATGCTCACGGACATGACGAACCGTATTATTTGCATGCAAAGCATATGTACAACTTGGATAGGATGAAACATCAGAAGTTGACCATGACGCTTGGAGTATTAACTGCATTCAGCATTGGCGTGGGTGTTCCAATCTATGCAGTCATCTTTCAGCAAAAGAAGACGGCCTCTGGATGA

Protein sequence

MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTASG

Homology

[Close]

BLAST of Cla97C09G172780 vs. NCBI nr
Match: XP_023535876.1 (uncharacterized protein LOC111797174 [Cucurbita pepo subsp. pepo] >XP_023535877.1 uncharacterized protein LOC111797174 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPI+AV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIFAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of Cla97C09G172780 vs. NCBI nr
Match: XP_004138643.1 (PREDICTED: uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63114.1 hypothetical protein Csa_2G403690 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of Cla97C09G172780 vs. NCBI nr
Match: XP_022936374.1 (uncharacterized protein LOC111443011 [Cucurbita moschata] >XP_022936375.1 uncharacterized protein LOC111443011 [Cucurbita moschata])

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTL VLTAFSIGVGVPI+AV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLAVLTAFSIGVGVPIFAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of Cla97C09G172780 vs. NCBI nr
Match: XP_008441241.1 (PREDICTED: uncharacterized protein LOC103485430 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-25
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

[Close]

BLAST of Cla97C09G172780 vs. NCBI nr
Match: XP_011659116.1 (PREDICTED: uncharacterized protein LOC101215354 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.9e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTLGVLTAFSIGV VPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKNQKLTMTLGVLTAFSIGVAVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of Cla97C09G172780 vs. TrEMBL
Match: tr|A0A0A0LQ20|A0A0A0LQ20_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

[Close]

BLAST of Cla97C09G172780 vs. TrEMBL
Match: tr|A0A1S3B3R2|A0A1S3B3R2_CUCME (uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGGHAHGHDEPYYLHAKHMYNLDRMK+QKLTMTLGVLTAFSIGVGVPIYAV+FQQKKTAS
Sbjct: 37 MGGHAHGHDEPYYLHAKHMYNLDRMKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTAS 96

[Close]

BLAST of Cla97C09G172780 vs. TrEMBL
Match: tr|A0A061FJK9|A0A061FJK9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_036395 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 2  GGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTASG 61
          GGHAHGHDEPYYLHAKHMYNLDRMKHQKL M+LGV TAFSIGVG+P+YAVIFQQKKTASG
Sbjct: 40 GGHAHGHDEPYYLHAKHMYNLDRMKHQKLKMSLGVFTAFSIGVGLPVYAVIFQQKKTASG 99

[Close]

BLAST of Cla97C09G172780 vs. TrEMBL
Match: tr|A0A2R6R2D8|A0A2R6R2D8_ACTCH (TonB-dependent heme receptor A like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11462 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-23
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          MGG  HGHDEP+YLHAKHMYNLDRMKHQKLTM+LGVLTAFSIGVGVPI+AVIFQQKKTAS
Sbjct: 40 MGG-GHGHDEPFYLHAKHMYNLDRMKHQKLTMSLGVLTAFSIGVGVPIFAVIFQQKKTAS 99

Query: 61 G 62
          G
Sbjct: 100 G 99

[Close]

BLAST of Cla97C09G172780 vs. TrEMBL
Match: tr|A0A1R3G5R9|A0A1R3G5R9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28660 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-23
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 2    GGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 61
            GGHAHGHDEPYYLHAKHMYNLDRMKHQKL M+LGV TAFSIGV VP+YAV+FQQKKTAS
Sbjct: 4293 GGHAHGHDEPYYLHAKHMYNLDRMKHQKLKMSLGVFTAFSIGVVVPVYAVVFQQKKTAS 4351

[Close]

BLAST of Cla97C09G172780 vs. TAIR10
Match: AT1G72020.1 (unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-20
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MGGHAHGHDEPYYLHAKHMYNLDRMKHQKLTMTLGVLTAFSIGVGVPIYAVIFQQKKTAS 60
          M G  HG  + YYLHAKHMYNLDRMK+Q L M+LGV TAFSIGVGVPI+AV+FQQ+KT S
Sbjct: 37 MSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSLGVFTAFSIGVGVPIFAVVFQQRKTQS 96

Query: 61 G 62
          G
Sbjct: 97 G 97

The following BLAST results are available for this feature:

BLAST of Cla97C09G172780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535876.1	3.5e-26	96.72	uncharacterized protein LOC111797174 [Cucurbita pepo subsp. pepo] >XP_023535877....	[more]
XP_004138643.1	6.0e-26	96.72	PREDICTED: uncharacterized protein LOC101217188 [Cucumis sativus] >KGN63114.1 hy...	[more]
XP_022936374.1	1.7e-25	95.08	uncharacterized protein LOC111443011 [Cucurbita moschata] >XP_022936375.1 unchar...	[more]
XP_008441241.1	3.0e-25	96.67	PREDICTED: uncharacterized protein LOC103485430 [Cucumis melo]	[more]
XP_011659116.1	3.9e-25	95.08	PREDICTED: uncharacterized protein LOC101215354 [Cucumis sativus]	[more]

BLAST of Cla97C09G172780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQ20\|A0A0A0LQ20_CUCSA	3.9e-26	96.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403690 PE=4 SV=1	[more]
tr\|A0A1S3B3R2\|A0A1S3B3R2_CUCME	2.0e-25	96.67	uncharacterized protein LOC103485430 OS=Cucumis melo OX=3656 GN=LOC103485430 PE=...	[more]
tr\|A0A061FJK9\|A0A061FJK9_THECC	2.8e-24	91.67	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_036395 PE=4 SV=1	[more]
tr\|A0A2R6R2D8\|A0A2R6R2D8_ACTCH	5.3e-23	91.80	TonB-dependent heme receptor A like OS=Actinidia chinensis var. chinensis OX=159...	[more]
tr\|A0A1R3G5R9\|A0A1R3G5R9_COCAP	9.1e-23	89.83	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28660 PE=4 ...	[more]

BLAST of Cla97C09G172780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G172780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72020.1	3.5e-20	73.77	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0004518	nuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G172780.1	Cla97C09G172780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36003	FAMILY NOT NAMED	coord: 4..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G172780	Cla015047	Watermelon (97103) v1	wmwmbB041
Cla97C09G172780	ClCG09G009960	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G172780	CSPI07G12670	Wild cucumber (PI 183967)	cpiwmbB592
Cla97C09G172780	CmaCh01G009850	Cucurbita maxima (Rimu)	cmawmbB516
Cla97C09G172780	CmaCh09G011060	Cucurbita maxima (Rimu)	cmawmbB049
Cla97C09G172780	CmoCh09G011130	Cucurbita moschata (Rifu)	cmowmbB036
Cla97C09G172780	CmoCh01G010230	Cucurbita moschata (Rifu)	cmowmbB498
Cla97C09G172780	Lsi02G019870	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G172780	Carg23296	Silver-seed gourd	carwmbB0284
Cla97C09G172780	Bhi09G001237	Wax gourd	wgowmbB619

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G172780	Silver-seed gourd	carwmbB0066
Cla97C09G172780	Silver-seed gourd	carwmbB0866
Cla97C09G172780	Cucumber (Gy14) v2	cgybwmbB542
Cla97C09G172780	Cucumber (Gy14) v1	cgywmbB078
Cla97C09G172780	Cucurbita maxima (Rimu)	cmawmbB323
Cla97C09G172780	Cucurbita maxima (Rimu)	cmawmbB795
Cla97C09G172780	Cucurbita moschata (Rifu)	cmowmbB306
Cla97C09G172780	Cucurbita moschata (Rifu)	cmowmbB770
Cla97C09G172780	Wild cucumber (PI 183967)	cpiwmbB597
Cla97C09G172780	Cucumber (Chinese Long) v3	cucwmbB593
Cla97C09G172780	Cucumber (Chinese Long) v2	cuwmbB571
Cla97C09G172780	Melon (DHL92) v3.6.1	medwmbB216
Cla97C09G172780	Melon (DHL92) v3.5.1	mewmbB230
Cla97C09G172780	Wax gourd	wgowmbB608