Cla97C09G171760 (gene) Watermelon (97103) v2

Overview
NameCla97C09G171760
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr09 : 8152773 .. 8153279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGTCGCATAGTCCCCCATTTTCAACTCCATCGAAACCAACCTCGACGTTGGAGACTCAGTGTGACAGAAATTAGGGACAAATAGGGTTTCTCAACGATGCTTCATGGCTGACATTTGCAGGAACGTGCTGTGTTCTTGGGCAATTTTCCTTCCATTTTAATTCAACCAACTTTTTTCCTCGCACAAAACCCTAGGGCAGACCAACCTGAGGGAACCAACTCTCTGGGTTCTCCAATAATAGCCCTCCCAGCTTCCAATTTCTTCACTCTCCTCGAAATTCAGGTGATTATTTCGTTGCTTGCTGGTTTTTGGTTCAATTCTCGGAAACCCTAGAATTTTAAATTTGGGGATTTGCCAGGGGTGCAATGATTTTGGGTTATTCTACGTTAGGGGTTTTAATGGTTATATGATTGTGTTTCGTATGGGTTATGCAATGTGA

mRNA sequence

ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGAACGTGCTGTGTTCTTGGGCAATTTTCCTTCCATTTTAATTCAACCAACTTTTTTCCTCGCACAAAACCCTAGGGCAGACCAACCTGAGGGAACCAACTCTCTGGGTTCTCCAATAATAGCCCTCCCAGCTTCCAATTTCTTCACTCTCCTCGAAATTCAGGGGTGCAATGATTTTGGGTTATTCTACGTTAGGGGTTTTAATGGTTATATGATTGTGTTTCGTATGGGTTATGCAATGTGA

Coding sequence (CDS)

ATGGATACCCATATTTTCAAAGGCCCCTTCTTCATCGTCTTCTTCATGTCCAGCCCACTACTCGCAGAGGAACGTGCTGTGTTCTTGGGCAATTTTCCTTCCATTTTAATTCAACCAACTTTTTTCCTCGCACAAAACCCTAGGGCAGACCAACCTGAGGGAACCAACTCTCTGGGTTCTCCAATAATAGCCCTCCCAGCTTCCAATTTCTTCACTCTCCTCGAAATTCAGGGGTGCAATGATTTTGGGTTATTCTACGTTAGGGGTTTTAATGGTTATATGATTGTGTTTCGTATGGGTTATGCAATGTGA

Protein sequence

MDTHIFKGPFFIVFFMSSPLLAEERAVFLGNFPSILIQPTFFLAQNPRADQPEGTNSLGSPIIALPASNFFTLLEIQGCNDFGLFYVRGFNGYMIVFRMGYAM
Homology
[Close]
BLAST of Cla97C09G171760 vs. NCBI nr
Match: KGN44606.1 (hypothetical protein Csa_7G342000 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 45/78 (57.69%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 1  MDTHIFKGPFFIVFFMSSPLLAEERAVFLGNFPSILIQPTFF-LAQNPRADQPEGTNSLG 60
          M+THIFKGP       + P         LG F        FF LAQNPRA Q EGTNSL 
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNSTNFFSLAQNPRAHQAEGTNSLS 60

Query: 61 SPIIALPASNFFTLLEIQ 78
          SPIIA PASNFFTLLEIQ
Sbjct: 61 SPIIAFPASNFFTLLEIQ 78

[Close]
BLAST of Cla97C09G171760 vs. TrEMBL
Match: tr|A0A0A0K9W9|A0A0A0K9W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-13
Identity = 45/78 (57.69%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 1  MDTHIFKGPFFIVFFMSSPLLAEERAVFLGNFPSILIQPTFF-LAQNPRADQPEGTNSLG 60
          M+THIFKGP       + P         LG F        FF LAQNPRA Q EGTNSL 
Sbjct: 1  MNTHIFKGPLLRRLLHAQPTTRRGTCCVLGQFSFHFNSTNFFSLAQNPRAHQAEGTNSLS 60

Query: 61 SPIIALPASNFFTLLEIQ 78
          SPIIA PASNFFTLLEIQ
Sbjct: 61 SPIIAFPASNFFTLLEIQ 78

The following BLAST results are available for this feature:
BLAST of Cla97C09G171760 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44606.19.8e-1357.69hypothetical protein Csa_7G342000 [Cucumis sativus][more]
BLAST of Cla97C09G171760 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9W9|A0A0A0K9W9_CUCSA6.5e-1357.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G342000 PE=4 SV=1[more]
BLAST of Cla97C09G171760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C09G171760 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G171760.1Cla97C09G171760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G171760CmaCh08G002150Cucurbita maxima (Rimu)cmawmbB940
Cla97C09G171760Carg05038Silver-seed gourdcarwmbB0085
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G171760Wax gourdwgowmbB109
Cla97C09G171760Wax gourdwgowmbB608
Cla97C09G171760Silver-seed gourdcarwmbB0449
Cla97C09G171760Cucumber (Gy14) v2cgybwmbB542
Cla97C09G171760Cucumber (Gy14) v1cgywmbB078
Cla97C09G171760Cucurbita maxima (Rimu)cmawmbB390
Cla97C09G171760Cucurbita moschata (Rifu)cmowmbB373
Cla97C09G171760Cucurbita moschata (Rifu)cmowmbB916
Cla97C09G171760Wild cucumber (PI 183967)cpiwmbB597
Cla97C09G171760Cucumber (Chinese Long) v3cucwmbB593
Cla97C09G171760Cucumber (Chinese Long) v2cuwmbB571
Cla97C09G171760Bottle gourd (USVL1VR-Ls)lsiwmbB212
Cla97C09G171760Melon (DHL92) v3.6.1medwmbB210
Cla97C09G171760Melon (DHL92) v3.5.1mewmbB225
Cla97C09G171760Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G171760Watermelon (97103) v1wmwmbB041