Cla97C08G149540 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149540
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17926309 .. 17926608 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

mRNA sequence

ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

Protein sequence

MGYSTANILILAILVASMALRLPSETTASAVADPSPPPPSHLALAAPIYNSPIKVSLKGKAASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF

Homology

[Close]

BLAST of Cla97C08G149540 vs. NCBI nr
Match: KGN46158.1 (hypothetical protein Csa_6G058720 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 7.4e-18
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MGYSTANILILAILVASMALRLPSETTASAVXXXXXXXXSHLALAAPIYNSPIKVSLKGK 60
           MG STANI+IL I VAS+ALRLP+ETTA A+          L     IYN+ +KV L  +
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLL----IYNTVMKVRLNDE 60

Query: 61  AASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF 100
           A S E + DDES+PPLK+EK  RKPWPK PVSKSPPPPF
Sbjct: 61  AGSGEGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95

[Close]

BLAST of Cla97C08G149540 vs. TrEMBL
Match: tr|A0A0A0K9K2|A0A0A0K9K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-18
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1   MGYSTANILILAILVASMALRLPSETTASAVXXXXXXXXSHLALAAPIYNSPIKVSLKGK 60
           MG STANI+IL I VAS+ALRLP+ETTA A+          L     IYN+ +KV L  +
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLL----IYNTVMKVRLNDE 60

Query: 61  AASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF 100
           A S E + DDES+PPLK+EK  RKPWPK PVSKSPPPPF
Sbjct: 61  AGSGEGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:

BLAST of Cla97C08G149540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46158.1	7.4e-18	59.60	hypothetical protein Csa_6G058720 [Cucumis sativus]	[more]

BLAST of Cla97C08G149540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9K2\|A0A0A0K9K2_CUCSA	4.9e-18	59.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1	[more]

BLAST of Cla97C08G149540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149540 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149540.1	Cla97C08G149540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149540	Cla013833	Watermelon (97103) v1	wmwmbB100
Cla97C08G149540	Csa6G058720	Cucumber (Chinese Long) v2	cuwmbB500
Cla97C08G149540	ClCG08G006840	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149540	CSPI06G05070	Wild cucumber (PI 183967)	cpiwmbB526
Cla97C08G149540	CmoCh15G006140	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149540	Bhi04G001384	Wax gourd	wgowmbB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149540	Silver-seed gourd	carwmbB0063
Cla97C08G149540	Silver-seed gourd	carwmbB0862
Cla97C08G149540	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149540	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149540	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149540	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149540	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149540	Melon (DHL92) v3.5.1	mewmbB308