CmoCh15G006140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 2987046 .. 2987363 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAAATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGTATGAATCTGAACCACCACCACCATCATCCAAGGTTAGACGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

mRNA sequence

ATGATCAAAATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGTATGAATCTGAACCACCACCACCATCATCCAAGGTTAGACGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG

Coding sequence (CDS)

ATGATCAAAATGGGGTATTCCACGGCTAACCTATTCATTGTTATTTTGGTAGCATCCATTGCTCTAAGGCCACCGTCGGCAACCACCGCAAGCGCCGTCGTTGGCCCTTCTCCTCTGCCGCCGCCGATATACCATTCAGCTTCTGGGACACTATCATTTGGCCGTTATATCAAAATTAGCCTTGAAGGGAAGGCAGGCCCTGTAGTGGAAAATGGAGAGTATGAATCTGAACCACCACCACCATCATCCAAGGTTAGACGCCCCAGACGACCATGGCCTAAGAAACCTGTCGCCAAATCGCCACCGCCTCCATTTTAG
Homology
[Close]
BLAST of CmoCh15G006140 vs. TrEMBL
Match: A0A0A0K9K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 

Query: 4   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLE 63
           MG STAN+ I+ I VASIALR P+ TTA A+  P PL  P        L +   +K+ L 
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWP------RLLIYNTVMKVRLN 60

Query: 64  GKAGPVVENGEYESEPPPPSSKVRRPRRPWPKKPVAKSPPPPF 106
            +AG    +G+ ES+PP    K    R+PWPK PV+KSPPPPF
Sbjct: 61  DEAGSGEGSGDDESDPPLKEEK--GSRKPWPKNPVSKSPPPPF 95

[Close]
BLAST of CmoCh15G006140 vs. NCBI nr
Match: gi|700190954|gb|KGN46158.1| (hypothetical protein Csa_6G058720 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 

Query: 4   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLE 63
           MG STAN+ I+ I VASIALR P+ TTA A+  P PL  P        L +   +K+ L 
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWP------RLLIYNTVMKVRLN 60

Query: 64  GKAGPVVENGEYESEPPPPSSKVRRPRRPWPKKPVAKSPPPPF 106
            +AG    +G+ ES+PP    K    R+PWPK PV+KSPPPPF
Sbjct: 61  DEAGSGEGSGDDESDPPLKEEK--GSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:
BLAST of CmoCh15G006140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9K2_CUCSA1.5e-0847.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1[more]
BLAST of CmoCh15G006140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190954|gb|KGN46158.1|2.2e-0847.57hypothetical protein Csa_6G058720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006140.1CmoCh15G006140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G006140Cp4.1LG13g04180Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G006140Cla97C08G149540Watermelon (97103) v2cmowmbB302
CmoCh15G006140Bhi04G001384Wax gourdcmowgoB0386
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G006140Cucumber (Gy14) v2cgybcmoB900
CmoCh15G006140Silver-seed gourdcarcmoB0092
CmoCh15G006140Silver-seed gourdcarcmoB1118
CmoCh15G006140Cucumber (Chinese Long) v3cmocucB0367
CmoCh15G006140Watermelon (97103) v2cmowmbB306
CmoCh15G006140Cucurbita moschata (Rifu)cmocmoB009
CmoCh15G006140Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G006140Cucumber (Gy14) v1cgycmoB0132
CmoCh15G006140Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G006140Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G006140Cucumber (Chinese Long) v2cmocuB305
CmoCh15G006140Melon (DHL92) v3.5.1cmomeB259
CmoCh15G006140Watermelon (Charleston Gray)cmowcgB234
CmoCh15G006140Watermelon (Charleston Gray)cmowcgB265
CmoCh15G006140Watermelon (97103) v1cmowmB244
CmoCh15G006140Watermelon (97103) v1cmowmB250
CmoCh15G006140Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G006140Cucurbita pepo (Zucchini)cmocpeB299
CmoCh15G006140Bottle gourd (USVL1VR-Ls)cmolsiB262
CmoCh15G006140Bottle gourd (USVL1VR-Ls)cmolsiB282